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Genome entropy and network centrality contrast exploration and exploitation in evolution of foodborne pathogens
Modelling evolution of foodborne pathogens is crucial for mitigation and prevention of outbreaks. We apply ne...
Module representatives for refining gene co-expression modules
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Towards a free energy-based elastic network model and its application to the SARS-COV2 binding to ACE2
Classical normal mode analysis (cNMA) is a standard method for studying the equilibrium vibrations of macromo...
Collective response to local perturbations: how to evade threats without losing coherence
Collective behavior in living aggregations often has a strong anti-predatory function. An efficient group response is cruc...
Computer simulation reveals the effect of severing enzymes on dynamic and stabilized microtubules
Microtubule (MT) severing enzymes Katanin and Spastin cut the MT into smaller fragments and are being studied...
Transfer function approach to understanding periodic forcing of signal transduction networks
Signal transduction networks are systems of biomolecules that deliver signals from one point in space to another, such as ...
Optimal metabolic strategies for microbial growth in stationary random environments
The standard theoretical view of bacterial growth posits that, in any growth medium, cells are capable of adjusting their ...
Diffusive exit rates through pores in membrane-enclosed structures
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Swarm formation as backward diffusion
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Stochasticity may generate coherent motion in bird flocks
Murmurations along with other forms of flocking have come to epitomize collective animal movements. Most stud...
Dynamical adaptation in photoreceptors with gain control
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How to build an epithelial tree
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On kinetics and extreme values in systems with random interactions
Biological environments such as the cytoplasm are comprised of many different molecules, which makes explicit...