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Constructing a knowledge graph for open government data: the case of Nova Scotia disease datasets
Constructing a knowledge graph for open government data: the case of Nova Scotia disease datasets
The majority of available datasets in open government data are statistical. They are widely published by various governmen...
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond
Evaluating the impact of environmental exposures on organism health is a key goal of modern biomedicine and is critically ...
MedLexSp – a medical lexicon for Spanish medical natural language processing
MedLexSp – a medical lexicon for Spanish medical natural language processing
Medical lexicons enable the natural language processing (NLP) of health texts. Lexicons gather terms and concepts from the...
Classifying literature mentions of biological pathogens as experimentally studied using natural language processing
Classifying literature mentions of biological pathogens as experimentally studied using natural language processing
Information pertaining to mechanisms, management and treatment of disease-causing pathogens including viruses and bacteria...
We are not ready yet: limitations of state-of-the-art disease named entity recognizers
We are not ready yet: limitations of state-of-the-art disease named entity recognizers
Intense research has been done in the area of biomedical natural language processing. Since the breakthrough of transfer l...
Alignment of vaccine codes using an ontology of vaccine descriptions
Alignment of vaccine codes using an ontology of vaccine descriptions
Vaccine information in European electronic health record (EHR) databases is represented using various clinical and databas...
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology
The current COVID-19 pandemic and the previous SARS/MERS outbreaks of 2003 and 2012 have resulted in a series of major glo...
Pathling: analytics on FHIR
Pathling: analytics on FHIR
Health data analytics is an area that is facing rapid change due to the acceleration of digitization of the health sector,...
Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs
Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs
The Vaccine Ontology (VO) is a biomedical ontology that standardizes vaccine annotation. Errors in VO will affect a multit...
DCSO: towards an ontology for machine-actionable data management plans
DCSO: towards an ontology for machine-actionable data management plans
The concept of Data Management Plan (DMP) has emerged as a fundamental tool to help researchers through the systematical m...
Correction: PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature
Correction: PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, whic...
Performance assessment of ontology matching systems for FAIR data
Performance assessment of ontology matching systems for FAIR data
Ontology matching should contribute to the interoperability aspect of FAIR data (Findable, Accessible, Interoperable, and ...
Anatomy and the type concept in biology show that ontologies must be adapted to the diagnostic needs of research
Anatomy and the type concept in biology show that ontologies must be adapted to the diagnostic needs of research
In times of exponential data growth in the life sciences, machine-supported approaches are becoming increasingly important...
Exploiting document graphs for inter sentence relation extraction
Exploiting document graphs for inter sentence relation extraction
Most previous relation extraction (RE) studies have focused on intra sentence relations and have ignored relations that sp...
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature
Adverse events induced by drug-drug interactions are a major concern in the United States. Current research is moving towa...
Synthesizing evidence from clinical trials with dynamic interactive argument trees
Synthesizing evidence from clinical trials with dynamic interactive argument trees
Evidence-based medicine propagates that medical/clinical decisions are made by taking into account high-quality evidence, ...
An annotated corpus of clinical trial publications supporting schema-based relational information extraction
An annotated corpus of clinical trial publications supporting schema-based relational information extraction
The evidence-based medicine paradigm requires the ability to aggregate and compare outcomes of interventions across differ...
SemClinBr - a multi-institutional and multi-specialty semantically annotated corpus for Portuguese clinical NLP tasks
SemClinBr - a multi-institutional and multi-specialty semantically annotated corpus for Portuguese clinical NLP tasks
The high volume of research focusing on extracting patient information from electronic health records (EHRs) has led to an...
Improving reusability along the data life cycle: a regulatory circuits case study
Improving reusability along the data life cycle: a regulatory circuits case study
In life sciences, there has been a long-standing effort of standardization and integration of reference datasets and datab...
Defining health data elements under the HL7 development framework for metadata management
Defining health data elements under the HL7 development framework for metadata management
Health data from different specialties or domains generallly have diverse formats and meanings, which can cause semantic c...
Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma
Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma
Transfer learning is a common practice in image classification with deep learning where the available data is often limite...
A multipurpose TNM stage ontology for cancer registries
A multipurpose TNM stage ontology for cancer registries
Population-based cancer registries are a critical reference source for the surveillance and control of cancer. Cancer regi...
Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction
Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction
Artificial intelligence methods applied to electronic medical records (EMRs) hold the potential to help physicians save ti...
Text mining-based measurement of precision of polysomnographic reports as basis for intervention
Text mining-based measurement of precision of polysomnographic reports as basis for intervention
Text mining can be applied to automate knowledge extraction from unstructured data included in medical reports and generat...
Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation
Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation
Electronic Laboratory Notebooks (ELNs) are used to document experiments and investigations in the wet-lab. Protocols in EL...
Ontology-based identification and prioritization of candidate drugs for epilepsy from literature
Ontology-based identification and prioritization of candidate drugs for epilepsy from literature
Drug repurposing can improve the return of investment as it finds new uses for existing drugs. Literature-based analyses e...
An annotated dataset for extracting gene-melanoma relations from scientific literature
An annotated dataset for extracting gene-melanoma relations from scientific literature
Melanoma is one of the least common but the deadliest of skin cancers. This cancer begins when the genes of a cell suffer ...
End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach
End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach
The advancement of science and technologies play an immense role in the way scientific experiments are being conducted. Un...
Residual refinement for interactive skin lesion segmentation
Residual refinement for interactive skin lesion segmentation
Image segmentation is a difficult and classic problem. It has a wide range of applications, one of which is skin lesion se...
Prefrontal fNIRS-based clinical data analysis of brain functions in individuals abusing different types of drugs
Prefrontal fNIRS-based clinical data analysis of brain functions in individuals abusing different types of drugs
The activation degree of the orbitofrontal cortex (OFC) functional area in drug abusers is directly related to the craving...
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