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Bacterial and host fucosylation maintain IgA homeostasis to limit intestinal inflammation in mice
Bacterial and host fucosylation maintain IgA homeostasis to limit intestinal inflammation in mice
Inflammatory bowel disease is associated with several genetic risk loci. Loss-of-function mutation in the α1,2-fucosy...
Metabolic rearrangement enables adaptation of microbial growth rate to temperature shifts
Metabolic rearrangement enables adaptation of microbial growth rate to temperature shifts
Temperature is a key determinant of microbial behaviour and survival in the environment and within hosts. At intermediate ...
Author Correction: Multikingdom and functional gut microbiota markers for autism spectrum disorder
These authors contributed equally: Qi Su, Oscar W. H. Wong.Microbiota I-Center (MagIC), Hong Kong SAR, ChinaQi Su, Wenqi L...
Author Correction: Environmentally dependent interactions shape patterns in gene content across natural microbiomes
Department of Ecology and Evolution, The University of Chicago, Chicago, IL, USAKyle Crocker, Kiseok Keith Lee, Zeqian Li ...
Influenza A(H5N1) shedding in air corresponds to transmissibility in mammals
Influenza A(H5N1) shedding in air corresponds to transmissibility in mammals
An increase in spillover events of highly pathogenic avian influenza A(H5N1) viruses to mammals suggests selection of viru...
Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical genetics
Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical genetics
By acquiring or evolving resistance to one antibiotic, bacteria can become cross-resistant to a second antibiotic, which f...
Deep mutation, insertion and deletion scanning across the Enterovirus A proteome reveals constraints shaping viral evolution
Deep mutation, insertion and deletion scanning across the Enterovirus A proteome reveals constraints shaping viral evolution
Insertions and deletions (InDels) are essential to protein evolution. In RNA viruses, InDels contribute to the emergence o...
A year of microbiology
We look back at this year’s Nature Microbiology content covering the spectrum of microbiology, from fundamental adva...
Gut physiology and environment explain variations in human gut microbiome composition and metabolism
Gut physiology and environment explain variations in human gut microbiome composition and metabolism
The human gut microbiome is highly personal. However, the contribution of gut physiology and environment to variations in ...
A framework for understanding collective microbiome metabolism
A framework for understanding collective microbiome metabolism
Microbiome metabolism underlies numerous vital ecosystem functions. Individual microbiome members often perform partial ca...
Searching for high pathogenicity avian influenza virus in Antarctica
Searching for high pathogenicity avian influenza virus in Antarctica
We gratefully acknowledge funding of the Australis Expedition by the International Association of Antarctica Tour Operator...
Engineering history with Asgard archaea of the kingdom Promethearchaeati
Engineering history with Asgard archaea of the kingdom Promethearchaeati
Multiple histories converge in Masaru Nobu’s story of culturing an archaeon closely related to us eukaryotes.
Coffee habits help shape gut communities
Coffee habits help shape gut communities
Routine coffee consumption is associated with a gut microbiome signature characterized by elevated levels of Lawsonibacter...
The Parkinson’s disease drug entacapone disrupts gut microbiome homoeostasis via iron sequestration
The Parkinson’s disease drug entacapone disrupts gut microbiome homoeostasis via iron sequestration
Many human-targeted drugs alter the gut microbiome, leading to implications for host health. However, the mechanisms under...
Parkinson’s drug starves gut microbes of iron
Parkinson’s drug starves gut microbes of iron
Entacapone, a drug used in the treatment of Parkinson’s disease, disrupts gut microbial communities by sequestering ...
Retraction Note: Culture of previously uncultured members of the human gut microbiota by culturomics
Aix Marseille Université URMITE, UM63, CNRS 7278, IRD 198, INSERM 1095, 27 Boulevard Jean Moulin, Marseille, Cedex 5, Fran...
Differential stress responsiveness determines intraspecies virulence heterogeneity and host adaptation in Listeria monocytogenes
Differential stress responsiveness determines intraspecies virulence heterogeneity and host adaptation in Listeria monocytogenes
Microbial pathogenesis is mediated by the expression of virulence genes. However, as microbes with identical virulence gen...
The neonatal Fc receptor is a cellular receptor for human astrovirus
The neonatal Fc receptor is a cellular receptor for human astrovirus
Human astroviruses (HAstV) are major causes of gastroenteritis, especially in children, and there are no vaccines or antiv...
Bacterial chemotaxis toward virus-infected cyanobacteria
Bacterial chemotaxis toward virus-infected cyanobacteria
During the pre-lysis phases of phage infection, the cyanobacterium Synechococcus releases metabolites that attract heterot...
Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts
Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts
Although diet is a substantial determinant of the human gut microbiome, the interplay between specific foods and microbial...
Metabolites from intact phage-infected Synechococcus chemotactically attract heterotrophic marine bacteria
Metabolites from intact phage-infected Synechococcus chemotactically attract heterotrophic marine bacteria
Chemical cues mediate interactions between marine phytoplankton and bacteria, underpinning ecosystem-scale processes inclu...
Single-cell imaging of the Mycobacterium tuberculosis cell cycle reveals linear and heterogenous growth
Single-cell imaging of the Mycobacterium tuberculosis cell cycle reveals linear and heterogenous growth
Difficulties in antibiotic treatment of Mycobacterium tuberculosis (Mtb) are partly thought to be due to heterogeneity in ...
Estimates of microbiome heritability across hosts
Estimates of microbiome heritability across hosts
Microbiomes contribute to variation in many plant and animal traits, suggesting that microbiome-mediated traits could evol...
Dietary zinc deficiency promotes Acinetobacter baumannii lung infection via IL-13 in mice
Dietary zinc deficiency promotes Acinetobacter baumannii lung infection via IL-13 in mice
Dietary zinc deficiency is a major risk factor for pneumonia. Acinetobacter baumannii is a leading cause of ventilator-ass...
A method to detect origin of transfer sequences for plasmid conjugation
A method to detect origin of transfer sequences for plasmid conjugation
Plasmid conjugation has been extensively studied over the past decades. Yet, in most plasmids, the minimal region required...
Microbial solutions must be deployed against climate catastrophe
Microbial solutions must be deployed against climate catastrophe
This paper is a call to action. By publishing concurrently across journals like an emergency bulletin, we are not merely m...
A widespread phage-encoded kinase enables evasion of multiple host antiphage defence systems
A widespread phage-encoded kinase enables evasion of multiple host antiphage defence systems
DNA degradation (Dnd) is a widespread bacterial antiphage defence system that relies on DNA phosphorothioate (PT) modifica...
Expanding the diversity of origin of transfer-containing sequences in mobilizable plasmids
Expanding the diversity of origin of transfer-containing sequences in mobilizable plasmids
Conjugative plasmids are important drivers of bacterial evolution. Most plasmids lack genes for conjugation and characteri...
Submicrometre spatiotemporal characterization of the Toxoplasma adhesion strategy for gliding motility
Submicrometre spatiotemporal characterization of the Toxoplasma adhesion strategy for gliding motility
Toxoplasma gondii is a protozoan apicomplexan parasite that uses an adhesion-dependent mode of motility termed gliding to ...
Guiding phage therapy with genomic surveillance
Guiding phage therapy with genomic surveillance
Integrating global and local genomic surveillance into phage therapy cocktail design offers a middle ground between person...
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