Standardized workflow for multiplexed charge detection mass spectrometry on orbitrap analyzers

Yates, J. R. III. A century of mass spectrometry: from atoms to proteomes. Nat. Methods 8, 633–637 (2011).

Article  CAS  Google Scholar 

Eliuk, S. & Makarov, A. Evolution of Orbitrap mass spectrometry instrumentation. Annu. Rev. Anal. Chem. 8, 61–80 (2015).

Article  Google Scholar 

Bogdanov, B. & Smith, R. D. Proteomics by FTICR mass spectrometry: top down and bottom up. Mass Spectrom. Rev. 24, 168–200 (2005).

Article  CAS  PubMed  Google Scholar 

Boesl, U. Time-of-flight mass spectrometry: introduction to the basics. Mass Spectrom. Rev. 36, 86–109 (2017).

Article  CAS  PubMed  Google Scholar 

Cooks, R. G., Glish, G. L., McLuckey, S. A. & Kaiser, R. E. Ion trap mass spectrometry. Chem. Eng. N. Arch. 69, 26–41 (1991).

Article  CAS  Google Scholar 

Jarrold, M. F. Applications of charge detection mass spectrometry in molecular biology and biotechnology. Chem. Rev. 122, 7415–7441 (2022).

Article  CAS  PubMed  Google Scholar 

Todd, A. R., Barnes, L. F., Young, K., Zlotnick, A. & Jarrold, M. F. Higher resolution charge detection mass spectrometry. Anal. Chem. 92, 11357–11364 (2020).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Miller, L. M. et al. Heterogeneity of glycan processing on trimeric SARS-CoV-2 spike protein revealed by charge detection mass spectrometry. J. Am. Chem. Soc. 143, 3959–3966 (2021).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kafader, J. O. et al. Multiplexed mass spectrometry of individual ions improves measurement of proteoforms and their complexes. Nat. Methods 17, 391–394 (2020).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Elliott, A. G., Merenbloom, S. I., Chakrabarty, S. & Williams, E. R. Single particle analyzer of mass: a charge detection mass spectrometer with a multi-detector electrostatic ion trap. Int. J. Mass Spectrom. 414, 45–55 (2017).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hogan, J. A. & Jarrold, M. F. Optimized electrostatic linear ion trap for charge detection mass spectrometry. J. Am. Soc. Mass Spectrom. 29, 2086–2095 (2018).

Article  CAS  PubMed  Google Scholar 

Aksenov, A. A. & Bier, M. E. The analysis of polystyrene and polystyrene aggregates into the mega dalton mass range by cryodetection MALDI TOF MS. J. Am. Soc. Mass Spectrom. 19, 219–230 (2008).

Article  CAS  PubMed  Google Scholar 

Frank, M., Labov, S. E., Westmacott, G. & Benner, W. H. Energy-sensitive cryogenic detectors for high-mass biomolecule mass spectrometry. Mass Spectrom. Rev. 18, 155–186 (1999).

Article  CAS  PubMed  Google Scholar 

Wenzel, R. J., Matter, U., Schultheis, L. & Zenobi, R. Analysis of megadalton ions using cryodetection MALDI time-of-flight mass spectrometry. Anal. Chem. 77, 4329–4337 (2005).

Article  CAS  PubMed  Google Scholar 

Kafader, J. O. et al. Individual ion mass spectrometry enhances the sensitivity and sequence coverage of top-down mass spectrometry. J. Proteome Res. 19, 1346–1350 (2020).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Melani, R. D. et al. Next-generation serology by mass spectrometry: readout of the SARS-CoV-2 antibody repertoire. J. Proteome Res. 21, 274–288 (2022).

Article  CAS  PubMed  Google Scholar 

Stiving, A. Q. et al. Dissecting the heterogeneous glycan profiles of recombinant coronavirus spike proteins with individual ion mass spectrometry. J. Am. Soc. Mass Spectrom. 35, 62–73 (2024).

Article  CAS  PubMed  Google Scholar 

Forte, E. et al. Divergent antibody repertoires found for Omicron versus Wuhan SARS-CoV-2 strains using Ig-MS. J. Proteome Res. 21, 2987–2997 (2022).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Drown, B. S. et al. Precise readout of MEK1 proteoforms upon MAPK pathway modulation by individual ion mass spectrometry. Anal. Chem. 96, 4455–4462 (2024).

Article  CAS  PubMed  Google Scholar 

Su, P. et al. Top-down proteomics of 10,000 single brain cells. Preprint at https://www.biorxiv.org/content/10.1101/2023.05.31.543176v1 (2023).

Su, P. et al. Single cell analysis of proteoforms. J. Proteome Res. 23, 1883–1893 (2024).

Article  CAS  PubMed  Google Scholar 

Su, P. et al. Highly multiplexed, label-free proteoform imaging of tissues by individual ion mass spectrometry. Sci. Adv. 8, eabp9929 (2022).

Article  CAS  PubMed  PubMed Central  Google Scholar 

McGee, J. P. et al. Automated imaging and identification of proteoforms directly from ovarian cancer tissue. Nat. Commun. 14, 6478 (2023).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kafader, J. O. et al. Measurement of individual ions sharply increases the resolution of Orbitrap mass spectra of proteins. Anal. Chem. 91, 2776–2783 (2019).

Article  CAS  PubMed  Google Scholar 

Perry, R. H., Cooks, R. G. & Noll, R. J. Orbitrap mass spectrometry: instrumentation, ion motion and applications. Mass Spectrom. Rev. 27, 661–699 (2008).

Article  CAS  PubMed  Google Scholar 

Zubarev, R. A. & Makarov, A. Orbitrap mass spectrometry. Anal. Chem. 85, 5288–5296 (2013).

Article  CAS  PubMed  Google Scholar 

Hu, Q. et al. The Orbitrap: a new mass spectrometer. J. Mass Spectrom. 40, 430–443 (2005).

Article  CAS  PubMed  Google Scholar 

Kafader, J. O. et al. STORI plots enable accurate tracking of individual ion signals. J. Am. Soc. Mass Spectrom. 30, 2200–2203 (2019).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bruins, A. P. Mechanistic aspects of electrospray ionization. J. Chromatogr. A 794, 345–357 (1998).

Article  CAS  Google Scholar 

Schachner, L. F. et al. Standard proteoforms and their complexes for native mass spectrometry. J. Am. Soc. Mass Spectrom. 30, 1190–1198 (2019).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jooß, K., McGee, J. P., Melani, R. D. & Kelleher, N. L. Standard procedures for native CZE-MS of proteins and protein complexes up to 800 kDa. Electrophoresis 42, 1050–1059 (2021).

Article  PubMed  PubMed Central  Google Scholar 

McGee, J. P. et al. Isotopic resolution of protein complexes up to 466 kDa using individual ion mass spectrometry. Anal. Chem. 93, 2723–2727 (2021).

Article  CAS  PubMed 

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