ADPDB: A Comprehensive Knowledgebase of Manually Curated Peptides Against Dengue Virus

Andrä J, Jakovkin I, Grötzinger J, Hecht O, Krasnosdembskaya AD, Goldmann T, Gutsmann T, Leippe M (2008) Structure and mode of action of the antimicrobial peptide arenicin. Biochem J 410(1):113–122

Article  PubMed  Google Scholar 

Chew MF, Poh KS, Poh CL (2017) Peptides as therapeutic agents for dengue virus. International journal of medical sciences, 14(13), p.1342

Chew MiawFang CM, PohKeatSeong PK, PohChitLaa PC (2017) Peptides as therapeutic agents for dengue virus. Int J Med Sci 14(13):1342–1359.

De La Guardia C, Lleonart R (2014) Progress in the identification of dengue virus entry/fusion inhibitors. BioMed research international, 2014

Diao L, Meibohm B (2013) Pharmacokinetics and pharmacokinetic–pharmacodynamic correlations of therapeutic peptides. Clin Pharmacokinet 52:855–868

Article  CAS  PubMed  Google Scholar 

dos Santos Nascimento IJ, da Silva Rodrigues ÉE, da Silva MF, de Araújo-Júnior JX, de Moura RO (2022) Advances in computational methods to Discover New NS2B-NS3 inhibitors useful against Dengue and Zika Viruses. Curr Top Med Chem 22(29):2435–2462

Article  PubMed  Google Scholar 

Gawde U, Chakraborty S, Waghu FH, Barai RS, Khanderkar A, Indraguru R, Shirsat T, Idicula-Thomas S (2023) CAMPR4: a database of natural and synthetic antimicrobial peptides. Nucleic Acids Res 51(D1):D377–D383

Article  CAS  PubMed  Google Scholar 

Gómez EA, Giraldo P, Orduz S (2017) InverPep: a database of invertebrate antimicrobial peptides. J Global Antimicrob Resist 8:13–17

Article  Google Scholar 

Hammami R, Ben Hamida J, Vergoten G, Fliss I (2009) PhytAMP: a database dedicated to antimicrobial plant peptides. Nucleic Acids Res 37(suppl1):D963–D968

Article  CAS  PubMed  Google Scholar 

Jhong JH, Yao L, Pang Y, Li Z, Chung CR, Wang R, Li S, Li W, Luo M, Ma R, Huang Y (2022) dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data. Nucleic Acids Res 50(D1):D460–D470

Article  CAS  PubMed  Google Scholar 

Khan A, Khan S, Ahmad S, Anwar Z, Hussain Z, Safdar M, Rizwan M, Waseem M, Hussain A, Akhlaq M, Khan T (2021a) HantavirusesDB: Vaccinomics and RNA-based therapeutics database for the potentially emerging human respiratory pandemic agents. Microb Pathog 160:105161

Article  CAS  PubMed  Google Scholar 

Khan A, Zia T, Suleman M, Khan T, Ali SS, Abbasi AA, Mohammad A, Wei DQ (2021b) Higher infectivity of the SARS-CoV‐2 new variants is associated with K417N/T, E484K, and N501Y mutants: an insight from structural data. J Cell Physiol 236(10):7045–7057

Article  CAS  PubMed  PubMed Central  Google Scholar 

Khan T, Khan A, Wei DQ (2021c) MMV-db: vaccinomics and RNA-based therapeutics database for infectious hemorrhagic fever-causing mammarenaviruses. Database 2021:pbaab063

Article  Google Scholar 

Khan T, Khan A, Nasir SN, Ahmad S, Ali SS, Wei DQ (2021d) CytomegaloVirusDb: multi-omics knowledge database for cytomegaloviruses. Comput Biol Med 135:104563

Article  CAS  PubMed  Google Scholar 

Khan T, Abdullah M, Toor TF, Almajhdi FN, Suleman M, Iqbal A, Ali L, Khan A, Waheed Y, Wei DQ (2022a) Evaluation of the whole proteome of achromobacterxylosoxidans to identify vaccine targets for mRNA and peptides-based vaccine designing against the emerging respiratory and lung cancer-causing bacteria. Front Med 8:p825876

Article  Google Scholar 

Khan T, Khan A, Ansari JK, Najmi MH, Wei DQ, Muhammad K, Waheed Y (2022b) Potential immunogenic activity of computationally designed mRNA-and peptide-based prophylactic vaccines against MERS, SARS-CoV, and SARS-CoV-2: a reverse vaccinology approach. Molecules 27(7):2375

Article  CAS  PubMed  PubMed Central  Google Scholar 

Khan T, Muzaffar A, Shoaib RM, Khan A, Waheed Y, Wei DQ (2022c) Towards specie-specific ensemble vaccine candidates against mammarenaviruses using optimized structural vaccinology pipeline and molecular modelling approaches. Microbial Pathogenesis, 172, p.105793

Khan T, Suleman M, Ali SS, Sarwar MF, Ali I, Ali L, Khan A, Rokhan B, Wang Y, Zhao R, Wei DQ (2022d) Subtractive proteomics assisted therapeutic targets mining and designing ensemble vaccine against Candida auris for immune response induction. Computers in Biology and Medicine, 145, p.105462

Kuhn RJ, Zhang W, Rossmann MG, Pletnev SV, Corver J, Lenches E, Jones CT, Mukhopadhyay S, Chipman PR, Strauss EG, Baker TS (2002) Structure of dengue virus: implications for flavivirus organization, maturation, and fusion. Cell 108(5):717–725

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lee MF, Anasir MI, Poh CL (2023) Development of novel antiviral peptides against dengue serotypes 1–4. Virology 580:10–27

Article  CAS  PubMed  Google Scholar 

Li Y, Chen Z (2008) RAPD: a database of recombinantly-produced antimicrobial peptides. FEMS Microbiol Lett 289(2):126–129

Article  CAS  PubMed  Google Scholar 

Lim SP, Wang QY, Noble CG, Chen YL, Dong H, Zou B, Yokokawa F, Nilar S, Smith P, Beer D, Lescar J (2013) Ten years of dengue drug discovery: progress and prospects. Antiviral Res 100(2):500–519

Article  CAS  PubMed  Google Scholar 

Liu Y, Zhu Y, Sun X, Ma T, Lao X, Zheng H (2023) DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins. Viruses, 15(4), p.820

Mathur D, Kaur H, Dhall A, Sharma N, Raghava GP (2021) SAPdb: a database of short peptides and the corresponding nanostructures formed by self-assembly. Comput Biol Med 133:104391

Article  CAS  PubMed  Google Scholar 

Mondal RK, Sen D, Arya A, Samanta SK (2023) Developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated AMPs. Scientific Reports, 13(1), p.17843

Obi JO, Gutiérrez-Barbosa H, Chua JV, Deredge DJ (2021) Current trends and limitations in dengue antiviral research. Tropical Medicine and Infectious Disease, 6(4), p.180

Palanichamy Kala M, John S, A.L. and, Rathore AP (2023) Dengue: Update on Clinically Relevant Therapeutic Strategies and Vaccines. Current Treatment Options in Infectious Diseases, pp.1–26

Qureshi A, Thakur N, Kumar M (2013) HIPdb: a database of experimentally validated HIV inhibiting peptides. PLoS ONE 8(1):e54908

Article  CAS  PubMed  PubMed Central  Google Scholar 

Qureshi A, Thakur N, Tandon H, Kumar M (2014) AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses. Nucleic Acids Res 42(D1):D1147–D1153

Article  CAS  PubMed  Google Scholar 

Reginald K, Chan Y, Plebanski M, Poh CL (2018) Development of peptide vaccines in dengue. Curr Pharm Design 24(11):1157–1173

Article  CAS  Google Scholar 

Seebah S, Suresh A, Zhuo S, Choong YH, Chua H, Chuon D, Beuerman R, Verma C (2007) Defensins knowledgebase: a manually curated database and information source focused on the defensins family of antimicrobial peptides. Nucleic Acids Res 35(suppl1):D265–D268

Article  CAS  PubMed  Google Scholar 

Shi G, Kang X, Dong F, Liu Y, Zhu N, Hu Y, Xu H, Lao X, Zheng H (2022) DRAMP 3.0: an enhanced comprehensive data repository of antimicrobial peptides. Nucleic Acids Res 50(D1):D488–D496

Article  CAS  PubMed  Google Scholar 

Shukla R, Ahuja R, Beesetti H, Garg A, Aggarwal C, Chaturvedi S, Nayyar K, Arora U, Lal AA, Khanna N (2023) Sinococuline, a bioactive compound of Cocculus hirsutus has potent anti-dengue activity. Scientific Reports, 13(1), p.1026

Théolier J, Fliss I, Jean J, Hammami R (2014) MilkAMP: a comprehensive database of antimicrobial peptides of dairy origin. Dairy Sci Technol 94:181–193

Article  Google Scholar 

Wang G, Li X, Wang Z (2016) APD3: the antimicrobial peptide database as a tool for research and education. Nucleic Acids Res 44(D1):D1087–D1093

Article  CAS  PubMed  Google Scholar 

Whitmore L, Wallace B (2004) The Peptaibol database: a database for sequences and structures of naturally occurring peptaibols. Nucleic Acids Res 32(suppl1):D593–D594

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zhang Q, Chen X, Li B, Lu C, Yang S, Long J, Chen H, Huang J, He B (2022) A database of anti-coronavirus peptides. Scientific Data, 9(1), p.294

Zhao X, Wu H, Lu H, Li G, Huang Q (2013) LAMP: a database linking antimicrobial peptides. PLoS ONE 8(6):e66557

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zouhir A, Taieb M, Lamine MA, Cherif A, Jridi T, Mahjoubi B, Mbarek S, Fliss I, Nefzi A, Sebei K, Hamida B, J (2017) ANTISTAPHYBASE: database of antimicrobial peptides (AMPs) and essential oils (EOs) against methicillin-resistant Staphylococcus aureus (MRSA) and Staphylococcus aureus. Arch Microbiol 199:215–222

Article  CAS  PubMed  Google Scholar 

Zouhir A, Souiai O, Harigua E, Cherif A, Chaalia AB, Sebei K (2023) ANTIPSEUDOBASE: Database of Antimicrobial Peptides and Essential Oils Against Pseudomonas. International Journal of Peptide Research and Therapeutics, 29(3), p.37

留言 (0)

沒有登入
gif