Genome wide identification and evolutionary analysis of vat like NBS-LRR genes potentially associated with resistance to aphids in cotton

Azhar MT, Amin I, Bashir A, Mansoor S (2011) Characterization of resistance gene analogs from Gossypium arboreum and their evolutionary relationships with homologs from tetraploid cottons. Euphytica 178(3):351–362. https://doi.org/10.1007/s10681-010-0310-0

Article  Google Scholar 

Bai J, Pennill LA, Ning J, Lee SW, Ramalingam J, Webb CA, Zhao B, Sun Q, Nelson JC, Leach JE (2002) Diversity in nucleotide binding site–leucine-rich repeat genes in cereals. Genome Res 12(12):1871–1884. https://doi.org/10.1101/gr.454902

Article  CAS  Google Scholar 

Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37(suppl2):W202–W208. https://doi.org/10.1093/nar/gkp335

Article  CAS  Google Scholar 

Bailey TL, Johnson J, Grant CE, Noble WS (2015) The MEME suite. Nucleic Acids Res 43(W1). https://doi.org/10.1093/nar/gkv416. W39-W49

Belkhadir Y, Subramaniam R, Dangl JL (2004) Plant disease resistance protein signaling: NBS–LRR proteins and their partners. Curr Opin Plant Biol 7(4):391–399. https://doi.org/10.1016/j.pbi.2004.05.009

Article  CAS  Google Scholar 

Boissot N, Schoeny A, Vanlerberghe-Masutti F (2016) Vat, an amazing gene conferring resistance to aphids and viruses they carry: from molecular structure to field effects. Front Plant Sci 7:1420. https://doi.org/10.3389/fpls.2016.01420

Article  Google Scholar 

Boissot N, Thomas S, Chovelon V, Lecoq H (2016) NBS-LRR-mediated resistance triggered by aphids: viruses do not adapt; aphids adapt via different mechanisms. BMC Plant Biol 16(1):1–12. https://doi.org/10.1186/s12870-016-0708-5

Article  CAS  Google Scholar 

Boissot N, Thomas S, Sauvion N, Marchal C, Pavis C, Dogimont C (2010) Mapping and validation of QTLs for resistance to aphids and whiteflies in melon. Theor Appl Genet 121(1):9–20. https://doi.org/10.1007/s00122-010-1287-8

Article  Google Scholar 

Carletto J, Martin T, Vanlerberghe-Masutti F, Brévault T (2010) Insecticide resistance traits differ among and within host races in Aphis gossypii. Pest Manag Sci 66(3):301–307. https://doi.org/10.1002/ps.1874

Article  CAS  Google Scholar 

Cevik V, King G (2002) High-resolution genetic analysis of the Sd-1 aphid resistance locus in Malus spp. Theor Appl Genet 105(2):346–354. https://doi.org/10.1007/s00122-002-0904-6

Article  CAS  Google Scholar 

Chao J, Li Z, Sun Y, Aluko OO, Wu X, Wang Q, Liu G (2021) MG2C: a user-friendly online tool for drawing genetic maps. Mol Hortic 1(1):1–4. https://doi.org/10.1186/s43897-021-00020-x

Article  CAS  Google Scholar 

Chen J-Y, Huang J-Q, Li N-Y, Ma X-F, Wang J-L, Liu C, Liu Y-F, Liang Y, Bao Y-M, Dai X-F (2015) Genome-wide analysis of the gene families of resistance gene analogues in cotton and their response to Verticillium wilt. BMC Plant Biol 15(1):1–15. https://doi.org/10.1186/s12870-015-0508-3

Article  CAS  Google Scholar 

Chovelon V, Feriche-Linares R, Barreau G, Chadoeuf J, Callot C, Gautier V, Le Paslier M-C, Berad A, Faivre-Rampant P, Lagnel J (2021) Building a cluster of NLR genes conferring resistance to pests and pathogens: the story of the vat gene cluster in cucurbits. Hort Res. https://doi.org/10.1038/s41438-021-00507-0

Article  Google Scholar 

Coll NS, Epple P, Dangl JL (2011) Programmed cell death in the plant immune system. Cell Death Differ 18(8):1247–1256. https://doi.org/10.1038/cdd.2011.37

Article  CAS  Google Scholar 

DeYoung BJ, Innes RW (2006) Plant NBS-LRR proteins in pathogen sensing and host defense. Nat Immunol 7(12):1243–1249. https://doi.org/10.1038/ni1410

Article  CAS  Google Scholar 

Dodds PN, Rathjen JP (2010) Plant immunity: towards an integrated view of plant–pathogen interactions. Nat Rev Genet 11(8):539–548. https://doi.org/10.1038/nrg2812

Article  CAS  Google Scholar 

Dogimont C, Chovelon V, Pauquet J, Boualem A, Bendahmane A (2014) The V at locus encodes for a CC-NBS‐LRR protein that confers resistance to Aphis gossypii infestation and A. gossypii‐mediated virus resistance. Plant J 80(6):993–1004. https://doi.org/10.1111/tpj.12690

Article  CAS  Google Scholar 

Dogimont C, Chovelon V, Tual S, Boissot N, Rittener-Ruff V, Giovinazzo N, Bendahmane A (2008) Molecular diversity at the Vat/Pm-W resistance locus in melon. in 9. Congrès international Eucarpia Meeting on Genentics and Breeding of Cucurbitaceae. (Pitrat Michel)

Douny C, Zoumenou Y, Aïna M, Toko II, Igout A, Guedegba L, Chabi SK, Kestemont P, Scippo M-L (2021) Contamination of water, sediment and fish with residues of pesticides used in cotton production in Northern Benin. Arch Environ Contam Toxicol 81(3):367–385. https://doi.org/10.1007/s00244-021-00888-2

Article  CAS  Google Scholar 

Dubey N, Singh K (2018) In: molecular aspects of plant-pathogen interaction. Springer, pp 115–138

Githiri S, Ampong-Nyarko K, Osir E, Kimani P (1996) Genetics of resistance to Aphis craccivora in cowpea. Euphytica 89(3):371–376. https://doi.org/10.1007/BF00022295

Article  Google Scholar 

Guan X, Song Q, Chen ZJ (2014) Polyploidy and small RNA regulation of cotton fiber development. Trends Plant Sci 19(8):516–528. https://doi.org/10.1016/j.tplants.2014.04.007

Article  CAS  Google Scholar 

Hall T, Biosciences I, Carlsbad C (2011) BioEdit: an important software for molecular biology. GERF Bull Biosci 2(1):60–61

Google Scholar 

Hall, T.A., 1999 Nucleic acids symposium series. Information Retrieval Ltd, pp.95-98.

Hegde M, Oliveira JN, Da Costa JG, Bleicher E, Santana AE, Bruce TJ, Caulfield J, Dewhirst SY, Woodcock CM, Pickett JA (2011) Identification of semiochemicals released by cotton, Gossypium hirsutum, upon infestation by the cotton aphid, Aphis gossypii. J Chem Ecol 37(7):741–750. https://doi.org/10.1007/s10886-011-9980-x

Article  CAS  Google Scholar 

Hill C, Chirumamilla A, Hartman G (2012) Resistance and virulence in the soybean-Aphis glycines interaction. Euphytica 186(3):635–646. https://doi.org/10.1007/s10681-012-0695-z

Article  CAS  Google Scholar 

Innes RW, Ameline-Torregrosa C, Ashfield T, Cannon E, Cannon SB, Chacko B, Chen NW, Couloux A, Dalwani A, Denny R (2008) Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiol 148(4):1740–1759. https://doi.org/10.1104/pp.108.127902

Article  CAS  Google Scholar 

Jaouannet M, Rodriguez PA, Thorpe P, Lenoir CJ, MacLeod R, Escudero-Martinez C, Bos JI (2014) Plant immunity in plant–aphid interactions. Front Plant Sci 5:663. https://doi.org/10.3389/fpls.2014.00663

Article  Google Scholar 

Jones JD, Dangl JL (2006) The plant immune system. Nature 444(7117):323–329. https://doi.org/10.1038/nature05286

Article  CAS  Google Scholar 

Jones P, Binns D, Chang H-Y, Fraser M, Li W, McAnulla C, McWilliam H, Maslen J, Mitchell A, Nuka G (2014) InterProScan 5: genome-scale protein function classification. Bioinformatics 30(9):1236–1240. https://doi.org/10.1093/bioinformatics/btu031

Article  CAS  Google Scholar 

Kerns D, Gaylor M (1992) Insecticide resistance in field populations of the cotton aphid (Homoptera: Aphididae). J Econ Entomol 85(1):1–8. https://doi.org/10.1093/jee/85.1.1

Article  CAS  Google Scholar 

Khan MA, Wahid A, Ahmad M, Tahir MT, Ahmed M, Ahmad S, Hasanuzzaman M (2020) World cotton production and consumption: an overview. Cotton product Uses. https://doi.org/10.1007/978-981-15-1472-2_1

Article  Google Scholar 

Kim J, Lim CJ, Lee B-W, Choi J-P, Oh S-K, Ahmad R, Kwon S-Y, Ahn J, Hur C-G (2012) A genome-wide comparison of NB-LRR type of resistance gene analogs (RGA) in the plant kingdom. Mol Cells 33(4):385–392. https://doi.org/10.1007/s10059-012-0003-8

Article  CAS  Google Scholar 

Klingler J, Creasy R, Gao L, Nair RM, Calix AS, Jacob HS, Edwards OR, Singh KB (2005) Aphid resistance in Medicago truncatula involves antixenosis and phloem-specific, inducible antibiosis, and maps to a single locus flanked by NBS-LRR resistance gene analogs. Plant Physiol 137(4):1445–1455. https://doi.org/10.1104/pp.104.051243

Article  CAS  Google Scholar 

Klingler JP, Edwards OR, Singh KB (2007) Independent action and contrasting phenotypes of resistance genes against spotted alfalfa aphid and bluegreen aphid in Medicago truncatula. New Phytol 173(3):630–640. https://doi.org/10.1111/j.1469-8137.2006.01939.x

Article  CAS  Google Scholar 

Klingler JP, Nair RM, Edwards OR, Singh KB (2009) A single gene, AIN, in Medicago truncatula mediates a hypersensitive response to both bluegreen aphid and pea aphid, but confers resistance only to bluegreen aphid. J Exp Bot 60(14):4115–4127. https://doi.org/10.1093/jxb/erp244

Article  CAS  Google Scholar 

Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35(6):1547. https://doi.org/10.1093/molbev/msy096

Article  CAS  Google Scholar 

Lambert P, Pascal T (2011) Mapping Rm2 gene conferring resistance to the green peach aphid (Myzus persicae Sulzer) in the peach cultivar “Rubira®”. Tree Genet Genomes 7(5):1057–1068

Article  Google Scholar 

Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30(1):325–327. https://doi.org/10.1093/nar/30.1.325

Article  CAS  Google Scholar 

Li F, Fan G, Lu C, Xiao G, Zou C, Kohel RJ, Ma Z, Shang H, Ma X, Wu J (2015) Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution. Nat Biotechnol 33(5):524–530. https://doi.org/10.1038/nbt.3208

Article  CAS  Google Scholar 

Li T, Ma X, Li N, Zhou L, Liu Z, Han H, Gui Y, Bao Y, Chen J, Dai X (2017) Genome-wide association study discovered candidate genes of Verticillium wilt resistance in upland cotton (Gossypium hirsutum L.). Plant Biotechnol J 15(12):1520–1532. https://doi.org/10.1111/pbi.12734

Article  CAS  Google Scholar 

Li X, Cheng Y, Ma W, Zhao Y, Jiang H, Zhang M (2010) Identification and characterization of NBS-encoding disease resistance genes in Lotus japonicus. Plant Syst Evol 289(1):101–110. https://doi.org/10.1007/s00606-010-0331-0

Article  Google Scholar 

Liang D, Chen M, Qi X, Xu Q, Zhou F, Chen X (2016) QTL mapping by SLAF-seq and expression analysis of candidate genes for aphid resistance in cucumber. Front Plant Sci 7:1000. https://doi.org/10.3389/fpls.2016.01000

Article  Google Scholar 

Lozano R, Hamblin MT, Prochnik S, Jannink J-L (2015) Identification and distribution of the NBS-LRR gene family in the cassava genome. BMC Genom 16(1):1–14. https://doi.org/10.1186/s12864-015-1554-9

Article  CAS  Google Scholar 

Mancini F, Van Bruggen AH, Jiggins JL, Ambatipudi AC, Murphy H (2005) Acute pesticide poisoning among female and male cotton growers in India. Int J Occup Environ Health 11(3):221–232. https://doi.org/10.1179/107735205800246064

Article  CAS 

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