Angiosperm Phylogeny Group, Chase MW , Christenhusz MJM, Fay MF, Byng JW, Judd WS, Soltis DE, Mabberley DJ, Sennikov AN, Soltis PS, Stevens PF (2016) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV. Bot J Linn Soc 181(1): 1–20. https://doi.org/10.1111/boj.12385

An Y, Song L, Liu Y, Shu Y, Guo C (2016) De novo transcriptional analysis of alfalfa in response to saline-alkaline stress. Front Plant Sci 7:931. https://doi.org/10.3389/fpls.2016.00931

Article  PubMed  PubMed Central  Google Scholar 

Barghetti A, Sjogren L, Floris M, Paredes EB, Wenkel S, Brodersen P (2017) Heat-shock protein 40 is the key farnesylation target in meristem size control, abscisic acid signaling, and drought resistance. Genes Dev 31:2282–2295. https://doi.org/10.1101/gad.301242.117

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen T, Xu T, Zhang T, Liu T, Shen L, Chen Z, Wu Y, Yang J (2021) Genome-wide identification and characterization of DnaJ gene family in grape (Vitis vinifera L.). Horticulturae 7(12):589. https://doi.org/10.3390/horticulturae7120589

Article  Google Scholar 

Chen C, Wu Y, Li J, Wang X, Zeng Z, Xu J, Liu Y, Feng J, Chen H, He Y, Xia R (2023) TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining. Mol Plant 16:1733–1742. https://doi.org/10.1016/j.molp.2023.09.010

Article  CAS  PubMed  Google Scholar 

Chou K, Shen H (2008) Cell-PLoc: a package of web servers for predicting subcellular localization of proteins in various organisms. Nat Protoc 3:153–162. https://doi.org/10.1038/nprot.2007.494

Article  CAS  PubMed  Google Scholar 

Fan F, Yang X, Cheng Y, Kang Y, Chai X (2017) The DnaJ gene family in pepper (Capsicum annuum L.): comprehensive identification, characterization and expression profiles. Front Plant Sci 8:689. https://doi.org/10.3389/fpls.2017.00689

Article  PubMed  PubMed Central  Google Scholar 

Fan FF, Liu F, Yang X, Wan H, Kang Y (2020) Global analysis of expression profile of members of DnaJ gene families involved in capsaicinoids synthesis in pepper (Capsicum annuum L.). BMC Plant Biol 20:326. https://doi.org/10.1186/s12870-020-02476-3

Article  CAS  PubMed  PubMed Central  Google Scholar 

Faust O, Abayev-Avraham M, Wentink AS, Maurer M, Nillegoda NB, London N, Bukau B, Rosenzweig R (2020) HSP40 proteins use class-specific regulation to drive HSP70 functional diversity. Nature 587:489–494. https://doi.org/10.1038/s41586-020-2906-4

Article  CAS  PubMed  Google Scholar 

Feng C, Feng C, Lin X, Liu S, Li Y, Kang M (2021) A chromosome-level genome assembly provides insights into ascorbic acid accumulation and fruit softening in guava (Psidium guajava). Plant Biotechnol J 19:717–730. https://doi.org/10.1111/pbi.13498

Article  CAS  PubMed  Google Scholar 

Georgopoulos CP, Lundquist-Heil A, Yochem J, Feiss M (1980) Identification of the E. coli dnaJ gene product. MGG 178:583–588. https://doi.org/10.1007/BF00337864

Article  CAS  PubMed  Google Scholar 

Harrison C (2003) GrpE, a nucleotide exchange factor for DnaK. Cell Stress Chaperones 8:218–224. https://doi.org/10.1126/science.aar7854

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kampinga HH, Andreasson C, Barducci A, Cheetham ME, Cyr D, Emanuelsson C, Genevaux P, Gestwicki JE, Goloubinoff P, Huerta-Cepas J et al (2019) Function, evolution, and structure of J-domain proteins. Cell Stress Chaperones 24:7–15. https://doi.org/10.1007/s12192-018-0948-4

Article  PubMed  Google Scholar 

Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19:1639–1645. https://doi.org/10.1101/gr.092759.109

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33(7):1870–4. https://doi.org/10.1093/molbev/msw054

Article  CAS  PubMed  PubMed Central  Google Scholar 

Leng YJ, Yao YS, Yang KZ, Wu PX, Xia YX, Zuo CR, Luo JH, Wang P, Liu YY, Zhang XQ et al (2022) Arabidopsis ERdj3B coordinates with ERECTA-family receptor kinases to regulate ovule development and the heat stress response. Plant Cell 34:3665–3684. https://doi.org/10.1093/plcell/koac226

Article  PubMed  PubMed Central  Google Scholar 

Li KP, Wong CH, Cheng CC, Cheng SS, Li MW, Mansveld S, Bergsma A, Huang T, van Eijk MJT, Lam HM (2021) GmDNJ1, a type-I heat shock protein 40 (HSP40), is responsible for both Growth and heat tolerance in soybean. Plant Direct 5:e00298. https://doi.org/10.1002/pld3.298

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu Q, Liang C, Zhou L (2020) Structural and functional analysis of the Hsp70/Hsp40 chaperone system. Protein Sci 29:378–390. https://doi.org/10.1002/pro.3725

Article  CAS  PubMed  Google Scholar 

Liu T, Xu M, Gao S, Zhang Y, Hu Y, Jin P, Cai L, Cheng Y, Chen J, Yang J, Zhong K (2022) Genome-wide identification and analysis of the regulation wheat DnaJ family genes following wheat yellow mosaic virus infection. J Integr Agric 21:153–169. https://doi.org/10.1016/s2095-3119(21)63619-5

Article  CAS  Google Scholar 

Luo Y, Fang B, Wang W, Yang Y, Rao L, Zhang C (2019) Genome-wide analysis of the rice J-protein family: identification, genomic organization, and expression profiles under multiple stresses. Biotech 9:358. https://doi.org/10.1007/s13205-019-1880-8

Article  Google Scholar 

Luo X, Li H, Wu Z, Yao W, Zhao P, Cao D, Yu H, Li K, Poudel K, Zhao D, Zhang F, Xia X, Chen L, Wang Q, Jing D, Cao S (2020) The pomegranate (Punica granatum L.) draft genome dissects genetic divergence between soft- and hard-seeded cultivars. Plant Biotechnol J 18(4):955–968. https://doi.org/10.1111/pbi.13260

Article  CAS  PubMed  Google Scholar 

Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290:1151–1155. https://doi.org/10.1126/science.290.5494.1151

Article  CAS  PubMed  Google Scholar 

Mistry J, Chuguransky S, Williams L, Qureshi M, Salazar GA, Sonnhammer ELL, Tosatto SCE, Paladin L, Raj S, Richardson LJ et al (2021) Pfam: the protein families database in 2021. Nucleic Acids Res 49:D412–D419. https://doi.org/10.1093/nar/gkaa913

Article  CAS  PubMed  Google Scholar 

Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D et al (2014) The genome of Eucalyptus grandis. Nature 510:356–362. https://doi.org/10.1038/nature13308

Article  CAS  PubMed  Google Scholar 

Ohta M, Wakasa Y, Takahashi H, Hayashi S, Kudo K, Takaiwa F (2013) Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J Exp Bot 64:5429–5441. https://doi.org/10.1093/jxb/ert312

Article  CAS  PubMed  PubMed Central  Google Scholar 

Pulido P, Leister D (2018) Novel DNAJ-related proteins in Arabidopsis thaliana. New Phytol 217:480–490. https://doi.org/10.1111/nph.14827

Article  CAS  PubMed  Google Scholar 

Qin G, Xu C, Ming R, Tang H, Guyot R, Kramer EM, Hu Y, Yi X, Qi Y, Xu X, Gao Z, Pan H, Jian J, Tian Y, Yue Z, Xu Y (2017) The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis. Plant J 91(6):1108–1128. https://doi.org/10.1111/tpj.13625

Article  CAS  PubMed  Google Scholar 

Qiu XB, Shao YM, Miao S, Wang L (2006) The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperones. Cell Mol Life Sci 63:2560–2570. https://doi.org/10.1007/s00018-006-6192-6

Article  CAS  PubMed  Google Scholar 

Rajan VB, D’Silva P (2009) Arabidopsis thaliana J-class heat shock proteins: cellular stress sensors. Funct Integr Genomics 9:433–446. https://doi.org/10.1007/s10142-009-0132-0

Article  CAS  PubMed  Google Scholar 

Shen L, Kang YG, Liu L, Yu H (2011) The J-domain protein J3 mediates the integration of flowering signals in Arabidopsis. Plant Cell 23:499–514. https://doi.org/10.1105/tpc.111.083048

Article  CAS  PubMed  PubMed Central  Google Scholar 

Sjogren L, Floris M, Barghetti A, Vollmy F, Linding R, Brodersen P (2018) Farnesylated heat shock protein 40 is a component of membrane-bound RISC in Arabidopsis. J Biol Chem 293:16608–16622. https://doi.org/10.1074/jbc.RA118.003887

Article  CAS  PubMed  PubMed Central  Google Scholar 

So H-A, Chung E, Lee J-H (2014) Arabidopsis atDjC53 encoding a type III J-protein plays a negative role in heat shock tolerance. Genes Genomics 36:733–744. https://doi.org/10.1007/s13258-014-0207-8

Article  CAS  Google Scholar 

Tamadaddi C, Verma AK, Zambare V, Vairagkar A, Diwan D, Sahi C (2022) J-like protein family of Arabidopsis thaliana: the enigmatic cousins of J-domain proteins. Plant Cell Rep 41:1343–1355. https://doi.org/10.1007/s00299-022-02857-y

Article  CAS  PubMed