Spatial analysis by current multiplexed imaging technologies for the molecular characterisation of cancer tissues

Lim B, Lin Y, Navin N. Advancing cancer research and medicine with single-cell genomics. Cancer Cell. 2020;37:456–70.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bu L, Baba H, Yoshida N, Miyake K, Yasuda T, Uchihara T, et al. Biological heterogeneity and versatility of cancer-associated fibroblasts in the tumor microenvironment. Oncogene. 2019;38:4887–901.

Article  CAS  PubMed  Google Scholar 

Elyada E, Bolisetty M, Laise P, Flynn WF, Courtois ET, Burkhart RA, et al. Cross-species single-cell analysis of pancreatic ductal adenocarcinoma reveals antigen-presenting cancer-associated fibroblasts. Cancer Discov. 2019;9:1102–23.

Article  CAS  PubMed Central  Google Scholar 

Kieffer Y, Hocine HR, Gentric G, Pelon F, Bernard C, Bourachot B, et al. Single-cell analysis reveals fibroblast clusters linked to immunotherapy resistance in cancer. Cancer Discov. 2020;10:1330–51.

Article  CAS  PubMed  Google Scholar 

Kumar V, Ramnarayanan K, Sundar R, Padmanabhan N, Srivastava S, Koiwa M, et al. Single-cell atlas of lineage states, tumor microenvironment, and subtype-specific expression programs in gastric cancer. Cancer Discov. 2022;12:670–91.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gruosso T, Gigoux M, Manem VSK, Bertos N, Zuo D, Perlitch I, et al. Spatially distinct tumor immune microenvironments stratify triple-negative breast cancers. J Clin Invest. 2019;129:1785–800.

Article  PubMed  PubMed Central  Google Scholar 

Miheecheva N, Postovalova E, Lyu Y, Ramachandran A, Bagaev A, Svekolkin V, et al. Multiregional single-cell proteogenomic analysis of ccRCC reveals cytokine drivers of intratumor spatial heterogeneity. Cell Rep. 2022;40:111180.

Article  CAS  PubMed  Google Scholar 

Grout JA, Sirven P, Leader AM, Maskey S, Hector E, Puisieux I, et al. Spatial positioning and matrix programs of cancer-associated fibroblasts promote T-cell exclusion in human lung tumors. Cancer Discov. 2022;12:2606–25.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gaglia G, Burger ML, Ritch CC, Rammos D, Dai Y, Crossland GE, et al. Lymphocyte networks are dynamic cellular communities in the immunoregulatory landscape of lung adenocarcinoma. Cancer Cell. 2023;41:871–86.e10.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lee JH, Daugharthy ER, Scheiman J, Kalhor R, Yang JL, Ferrante TC, et al. Highly multiplexed subcellular RNA sequencing in situ. Science. 2014;343:1360–3.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen KH, Boettiger AN, Moffitt JR, Wang S, Zhuang X RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells. Science. 2015;348:aaa6090.

Article  PubMed  PubMed Central  Google Scholar 

Shah S, Lubeck E, Zhou W, Cai L. seqFISH accurately detects transcripts in single cells and reveals robust spatial organization in the hippocampus. Neuron. 2017;94:752–8.e1.

Article  CAS  PubMed  Google Scholar 

Janesick A, Shelansky R, Gottscho AD, Wagner F, Williams SR, Rouault M, et al. High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis. Nat Commun. 2023;14:8353.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Johnson DB, Bordeaux J, Kim JY, Vaupel C, Rimm DL, Ho TH, et al. Quantitative spatial profiling of PD-1/PD-L1 interaction and HLA-DR/IDO-1 predicts improved outcomes of anti–PD-1 therapies in metastatic melanoma. Clin Cancer Res. 2018;24:5250–60.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gettinger SN, Choi J, Mani N, Sanmamed MF, Datar I, Sowell R, et al. A dormant TIL phenotype defines non-small cell lung carcinomas sensitive to immune checkpoint blockers. Nat Commun. 2018;9:3196.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Angelo M, Bendall SC, Finck R, Hale MB, Hitzman C, Borowsky AD, et al. Multiplexed ion beam imaging of human breast tumors. Nat Med. 2014;20:436–42.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Keren L, Bosse M, Thompson S, Risom T, Vijayaragavan K, McCaffrey E, et al. MIBI-TOF: a multiplexed imaging platform relates cellular phenotypes and tissue structure. Sci Adv. 2019;5:eaax5851.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Giesen C, Wang HA, Schapiro D, Zivanovic N, Jacobs A, Hattendorf B, et al. Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry. Nat Methods. 2014;11:417–22.

Article  CAS  PubMed  Google Scholar 

Baharlou H, Canete NP, Cunningham AL, Harman AN, Patrick E. Mass cytometry imaging for the study of human diseases—applications and data analysis strategies. Front Immunol. 2019;10:2657.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Glasson Y, Chepeaux LA, Dume AS, Lafont V, Faget J, Bonnefoy N, et al. Single-cell high-dimensional imaging mass cytometry: one step beyond in oncology. Semin Immunopathol. 2023;45:17–28.

PubMed  PubMed Central  Google Scholar 

Taube JM, Roman K, Engle EL, Wang C, Ballesteros-Merino C, Jensen SM, et al. Multi-institutional TSA-amplified Multiplexed Immunofluorescence Reproducibility Evaluation (MITRE) Study. J Immunother Cancer. 2021;9:e002197.

Article  PubMed  PubMed Central  Google Scholar 

Lin JR, Chen YA, Campton D, Cooper J, Coy S, Yapp C, et al. High-plex immunofluorescence imaging and traditional histology of the same tissue section for discovering image-based biomarkers. Nat Cancer. 2023;4:1036–52.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Tramu G, Pillez A, Leonardelli J. An efficient method of antibody elution for the successive or simultaneous localization of two antigens by immunocytochemistry. J Histochem Cytochem. 1978;26:322–4.

Article  CAS  PubMed  Google Scholar 

Lan HY, Mu W, Nikolic-Paterson DJ, Atkins RC. A novel, simple, reliable, and sensitive method for multiple immunoenzyme staining: use of microwave oven heating to block antibody crossreactivity and retrieve antigens. J Histochem Cytochem. 1995;43:97–102.

Article  CAS  PubMed  Google Scholar 

Pirici D, Mogoanta L, Kumar-Singh S, Pirici I, Margaritescu C, Simionescu C, et al. Antibody elution method for multiple immunohistochemistry on primary antibodies raised in the same species and of the same subtype. J Histochem Cytochem. 2009;57:567–75.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gendusa R, Scalia CR, Buscone S, Cattoretti G. Elution of high-affinity (>10-9 KD) antibodies from tissue sections: clues to the molecular mechanism and use in sequential immunostaining. J Histochem Cytochem. 2014;62:519–31.

Article  PubMed  PubMed Central  Google Scholar 

Goltsev Y, Samusik N, Kennedy-Darling J, Bhate S, Hale M, Vazquez G, et al. Deep profiling of mouse splenic architecture with CODEX multiplexed imaging. Cell. 2018;174:968–81.e15.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Schürch CM, Bhate SS, Barlow GL, Phillips DJ, Noti L, Zlobec I, et al. Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front. Cell. 2020;182:1341–59.e19.

Article  PubMed  PubMed Central  Google Scholar 

Papalegis D, Tkachev S, V

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