van Ingen J, Turenne CY, Tortoli E, Wallace RJ Jr, Brown-Elliott BA. A definition of the Mycobacterium avium complex for taxonomical and clinical purposes, a review. Int J Syst Evol Microbiol. 2018;68(11):3666–77. https://doi.org/10.1099/ijsem.0.003026.
Article CAS PubMed Google Scholar
Hoefsloot W, van Ingen J, Andrejak C, Angeby K, Bauriaud R, Bemer P, Beylis N, Boeree MJ, Cacho J, Chihota V, Chimara E, Churchyard G, Cias R, Daza R, Daley CL, Dekhuijzen PNR, Domingo D, Drobniewski F, Esteban J, Fauville-Dufaux M, Folkvardsen DB, Gibbons N, Gómez-Mampaso E, Gonzalez R, Hoffmann H, Hsueh P-R, Indra A, Jagielski T, Jamieson F, Jankovic M, Jong E, Keane J, Koh W-J, Lange B, Leao S, Macedo R, Mannsåker T, Marras TK, Maugein J, Milburn HJ, Mlinkó T, Morcillo N, Morimoto K, Papaventsis D, Palenque E, Paez-Peña M, Piersimoni C, Polanová M, Rastogi N, Richter E, Ruiz-Serrano MJ, Silva A, da Silva MP, Simsek H, van Soolingen D, Szabó N, Thomson R, Tórtola Fernandez T, Tortoli E, Totten SE, Tyrrell G, Vasankari T, Villar M, Walkiewicz R, Winthrop KL, Wagner D, Group NMNET. The geographic diversity of nontuberculous mycobacteria isolated from pulmonary samples: an NTM-NET collaborative study. Eur Respir J. 2013;42:1604–13.
Griffith DE, Aksamit T, Brown-Elliott BA, Catanzaro A, Daley C, Gordin F, Holland SM, Horsburgh R, Huitt G, Iademarco MF, Iseman M, Olivier K, Ruoss S, von Reyn CF, Wallace RJ, Winthrop K. An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases. Am J Respir Crit Care Med. 2007;175:367–416.
Article CAS PubMed Google Scholar
Weygaerde Y Vande, Cardinaels N, Bomans P, Chin T, Boelens J, André E, Braeckel E Van, v N. Clinical relevance of pulmonary non-tuberculous mycobacterial isolates in three reference centres in Belgium: a multicentre retrospective analysis. BMC Infect Dis. 2019;19(1):1061.
Wetzstein N, Hügel C, Wichelhaus TA, Hogardt M, Eickmeier O, Küpper-Tetzel C-P, Kann G, Just-Nübling G, Stephan C, Wolf T. Species distribution and clinical features of infection and colonisation with non-tuberculous mycobacteria in a tertiary care centre, central Germany, 2006–2016. Infection. 2019;47(5):817–25.
van Ingen J, Kohl TA, Kranzer K, Hasse B, Keller PM, Katarzyna Szafrańska A, Hillemann D, Chand M, Schreiber PW, Sommerstein R, Berger C, Genoni M, Rüegg C, Troillet N, Widmer AF, Becker SL, Herrmann M, Eckmanns T, Haller S, Höller C, Debast SB, Wolfhagen MJ, Hopman J, Kluytmans J, Langelaar M, Notermans DW, ten Oever J, van den Barselaar P, Vonk ABA, Vos MC, Ahmed N, Brown T, Crook D, Lamagni T, Phin N, Smith EG, Zambon M, Serr A, Götting T, Ebner W, Thürmer A, Utpatel C, Spröer C, Bunk B, Nübel U, Bloemberg GV, Böttger EC, Niemann S, Wagner D, Sax H. Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study. Lancet Infect Dis. 2017;17:1033–41.
Schreiber PW, Kohl TA, Kuster SP, Niemann S, Sax H. The global outbreak of Mycobacterium chimaera infections in cardiac surgery—a systematic review of whole-genome sequencing studies and joint analysis. Clin Microbiol Infect. Elsevier B.V. 2021;27(11):1613–20. https://doi.org/10.1016/j.cmi.2021.07.017.
Article CAS PubMed Google Scholar
Wetzstein N, Kohl TA, Diricks M, Mas-Peiro S, Holubec T, Kessel J, Graf C, Koch B, Herrmann E, Vehreschild MJGT, Hogardt M, Niemann S, Stephan C, Wichelhaus TA. Clinical characteristics and outcome of Mycobacterium chimaera infections after cardiac surgery: systematic review and meta-analysis of 180 heater-cooler unit associated cases. Clin Microbiol Infect. 2023;29(8):1008–14. https://doi.org/10.1016/j.cmi.2023.03.005.
Article CAS PubMed Google Scholar
Hasan NA, Davidson RM, Epperson LE, Kammlade SM, Beagle S, Levin AR, de Moura VC, Hunkins JJ, Weakly N, Sagel SD, Martiniano SL, Salfinger M, Daley CL, Nick JA, Strong M. Population genomics and inference of Mycobacterium avium complex clusters in cystic fibrosis care centers, United States. Emerg Infect Dis. 2021;27:2836–46.
Article CAS PubMed PubMed Central Google Scholar
van Tonder AJ, Ellis HC, Churchward C, p, Kumar K, Ramadan N, Benson S, Parkhill J, Moffatt MF, Loebinger MR, Cookson WO. Mycobacterium avium complex (MAC) genomics and transmission in a London hospital. Eur Respir J. 2022;61:2201237.
Bryant JM, Grogono DM, Greaves D, Foweraker J, Roddick I, Inns T, Reacher M, Haworth CS, Curran MD, Harris SR, Peacock SJ, Parkhill J, Floto RA. Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study. Lancet (London, England). 2013;381:1551–60.
Article CAS PubMed Google Scholar
Bryant JM, Grogono DM, Rodriguez-Rincon D, Everall I, Brown KP, Moreno P, Verma D, Hill E, Drijkoningen J, Gilligan P, Esther CR, Noone PG, Giddings O, Bell SC, Thomson R, Wainwright CE, Coulter C, Pandey S, Wood ME, Stockwell RE, Ramsay KA, Sherrard LJ, Kidd TJ, Jabbour N, Johnson GR, Knibbs LD, Morawska L, Sly PD, Jones A, Bilton D, Laurenson I, Ruddy M, Bourke S, Bowler IC, Chapman SJ, Clayton A, Cullen M, Daniels T, Dempsey O, Denton M, Desai M, Drew RJ, Edenborough F, Evans J, Folb J, Humphrey H, Isalska B, Jensen-Fangel S, Jönsson B, Jones AM, Katzenstein TL, Lillebaek T, MacGregor G, Mayell S, Millar M, Modha D, Nash EF, O’Brien C, O’Brien D, Ohri C, Pao CS, Peckham D, Perrin F, Perry A, Pressler T, Prtak L, Qvist T, Robb A, Rodgers H, Schaffer K, Shafi N, van Ingen J, Walshaw M, Watson D, West N, Whitehouse J, Haworth CS, Harris SR, Ordway D, Parkhill J, Floto RA. Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium. Science. 2016;354:751–7.
Article CAS PubMed PubMed Central Google Scholar
Ruis C, Bryant JM, Bell SC, Thomson R, Davidson RM, Hasan NA, Van Ingen J, Strong M, Floto RA, Parkhill J. Dissemination of Mycobacterium abscessus via global transmission networks https://doi.org/10.1038/s41564-021-00963-3.
Wetzstein N, Diricks M, Kohl TA, Wichelhaus TA, Andres S, Paulowski L, Schwarz C, Lewin A, Kehrmann J, Kahl BC, Dichtl K, Hügel C, Eickmeier O, Smaczny C, Schmidt A, Zimmermann S, Nährlich L, Hafkemeyer S, Niemann S, Maurer FP, Hogardt M. Molecular epidemiology of Mycobacterium abscessus isolates recovered from German Cystic fibrosis patients. Microbiol Spectr. 2022;10(4):e0171422.
Lewin A, Kamal E, Semmler T, Winter K, Kaiser S, Schäfer H, Mao L, Eschenhagen P, Grehn C, Bender J, Schwarz C. Genetic diversification of persistent Mycobacterium abscessus within cystic fibrosis patients. Virulence. 2021;12:2415–29.
Article CAS PubMed PubMed Central Google Scholar
Commins N, Sullivan MR, McGowen K, Koch EM, Rubin EJ, Farhat M. Mutation rates and adaptive variation among the clinically dominant clusters of Mycobacterium abscessus. Proc Natl Acad Sci. 2023;120:e2302033120.
Article CAS PubMed PubMed Central Google Scholar
Uchiya K, Takahashi H, Nakagawa T, Yagi T, Moriyama M, Inagaki T, et al. Characterization of a novel plasmid, pMAH135, from Mycobacterium avium subsp. hominissuis. PLoS One. 2015;10:e0117797.
Article CAS PubMed PubMed Central Google Scholar
Matsumoto CK, Bispo PJM, Santin K, Nogueira CL, Leão SC. Demonstration of plasmid-mediated drug resistance in Mycobacterium abscessus. J Clin Microbiol. 2014;52:1727–9. https://doi.org/10.1128/JCM.00032-14.
Article CAS PubMed PubMed Central Google Scholar
Brown-Elliott BA, Wallace RJ, Wengenack NL, Workman SD, Cameron ADS, Bush G, et al. Emergence of inducible macrolide resistance in Mycobacterium chelonae due to broad-host-range plasmid and chromosomal variants of the novel 23S rRNA methylase gene, erm(55). J Clin Microbiol. 2023;61(7):e0042823. https://doi.org/10.1128/jcm.00428-23
Article CAS PubMed Google Scholar
Moriyama M, Ogawa K, Nakagawa T, Nikai T, Uchiya K. Association between a pMAH135 plasmid and the progression of pulmonary disease caused by Mycobacterium avium. Kekkaku. 2016;91:9–15. Available: http://www.ncbi.nlm.nih.gov/pubmed/27192775.
Diel R, Ringshausen FC, Richter E, Welker L, Schmitz J, Nienhaus A. Microbiological and clinical outcomes of treating non-Mycobacterium avium complex nontuberculous mycobacterial pulmonary disease: a systematic review and meta-analysis. Chest. 2017;152:120–42.
Kwak N, Park J, Kim E, Lee C-H, Han SK, Yim J-J. Treatment outcomes of Mycobacterium avium complex lung disease: a systematic review and meta-analysis. Clin Infect Dis An Off Publ Infect Dis Soc Am. 2017. https://doi.org/10.1093/cid/cix517.
Park Y, Lee EH, Jung I, Park G, Kang YA. Clinical characteristics and treatment outcomes of patients with macrolide-resistant Mycobacterium avium complex pulmonary disease: a systematic review and meta-analysis. Resp Res. 2019;20(1):286. https://doi.org/10.1186/s12931-019-1258-9.
de Almeida IN, da Carvalho W, S, Rossetti ML, Costa ERD, Miranda SS de. Evaluation of six different DNA extraction methods for detection of Mycobacterium tuberculosis by means of PCR-IS6110: preliminary study. BMC Res Notes. 2013;6:561.
Article PubMed PubMed Central Google Scholar
Baym M, Kryazhimskiy S, Lieberman TD, Chung H, Desai MM, Kishony R. Inexpensive multiplexed library preparation for megabase-sized genomes. PLoS ONE. 2015;10:e0128036.
Article PubMed PubMed Central Google Scholar
GitHub - nh13/DWGSIM: whole genome simulator for next-generation sequencing. https://github.com/nh13/DWGSIM. Retrieved 11 August 2023.
NTMtools/scripts/NTMseq at main · ngs-fzb/NTMtools. [cited 28 May 2024]. Available: https://github.com/ngs-fzb/NTMtools/tree/main/scripts/NTMseq
GitHub - s-andrews/FastQC: a quality control analysis tool for high throughput sequencing data. https://github.com/s-andrews/FastQC. Retrieved 11 August 2023.
Ewels P, Magnusson M, Lundin S, Käller M. MultiQC: summarize analysis results for multiple tools and samples in a single report. Bioinformatics. 2016;32:3047–8.
留言 (0)