Machine learning integrative approaches to advance computational immunology

Kotas ME, Medzhitov R. Homeostasis, inflammation, and disease susceptibility. Cell. 2015;160:816–27.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bettcher BM, Tansey MG, Dorothée G, Heneka MT. Peripheral and central immune system crosstalk in Alzheimer disease - a research prospectus. Nat Rev Neurol. 2021;17:689–701.

Article  PubMed  PubMed Central  Google Scholar 

Meltzer A, Van de Water J. The role of the immune system in autism spectrum disorder. Neuropsychopharmacology. 2017;42:284–98.

Article  CAS  PubMed  Google Scholar 

Donath MY, Dinarello CA, Mandrup-Poulsen T. Targeting innate immune mediators in type 1 and type 2 diabetes. Nat Rev Immunol. 2019;19:734–46.

Article  CAS  PubMed  Google Scholar 

Hiam-Galvez KJ, Allen BM, Spitzer MH. Systemic immunity in cancer. Nat Rev Cancer. 2021;21:345–59.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Quah HS, Cao EY, Suteja L, Li CH, Leong HS, Chong FT, et al. Single cell analysis in head and neck cancer reveals potential immune evasion mechanisms during early metastasis. Nat Commun. 2023;14:1680.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kwok AJ, Allcock A, Ferreira RC, Cano-Gamez E, Smee M, Burnham KL, et al. Neutrophils and emergency granulopoiesis drive immune suppression and an extreme response endotype during sepsis. Nat Immunol. 2023;24:767–79.

Article  CAS  PubMed  Google Scholar 

Lutgens E, Atzler D, Döring Y, Duchene J, Steffens S, Weber C. Immunotherapy for cardiovascular disease. Eur Heart J. 2019;40:3937–46.

Article  CAS  PubMed  Google Scholar 

Esfahani K, Roudaia L, Buhlaiga N, Del Rincon SV, Papneja N, Miller WH Jr. A review of cancer immunotherapy: from the past, to the present, to the future. Curr Oncol. 2020;27:S87-97.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Abdelfattah N, Kumar P, Wang C, Leu J-S, Flynn WF, Gao R, et al. Single-cell analysis of human glioma and immune cells identifies S100A4 as an immunotherapy target. Nat Commun. 2022;13:767.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kaufmann SHE. Immunology’s coming of age. Front Immunol. 2019;10:684.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Picot J, Guerin CL, Le Van KC, Boulanger CM. Flow cytometry: retrospective, fundamentals and recent instrumentation. Cytotechnology. 2012;64:109–30.

Article  PubMed  PubMed Central  Google Scholar 

Bandura DR, Baranov VI, Ornatsky OI, Antonov A, Kinach R, Lou X, et al. Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry. Anal Chem. 2009;81:6813–22.

Article  CAS  PubMed  Google Scholar 

Pittet MJ, Michielin O, Migliorini D. Clinical relevance of tumour-associated macrophages. Nat Rev Clin Oncol. 2022;19:402–21.

Article  PubMed  Google Scholar 

Gomes T, Teichmann SA, Talavera-López C. Immunology driven by large-scale single-cell sequencing. Trends Immunol. 2019;40:1011–21.

Article  CAS  PubMed  Google Scholar 

Ginhoux F, Yalin A, Dutertre CA, Amit I. Single-cell immunology: Past, present, and future. Immunity. 2022;55:393–404.

Article  CAS  PubMed  Google Scholar 

Papalexi E, Satija R. Single-cell RNA sequencing to explore immune cell heterogeneity. Nat Rev Immunol. 2018;18:35–45.

Article  CAS  PubMed  Google Scholar 

Efremova M, Vento-Tormo R, Park J-E, Teichmann SA, James KR. Immunology in the era of single-cell technologies. Annu Rev Immunol. 2020;38:727–57.

Article  CAS  PubMed  Google Scholar 

Rood JE, Maartens A, Hupalowska A, Teichmann SA, Regev A. Impact of the human cell Atlas on medicine. Nat Med. 2022;28:2486–96.

Article  CAS  PubMed  Google Scholar 

Haque A, Engel J, Teichmann SA, Lönnberg T. A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications. Genome Med. 2017;9:75.

Article  PubMed  PubMed Central  Google Scholar 

Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, et al. The human cell atlas. Elife. 2017;6:e27041. https://doi.org/10.7554/eLife.27041.

Article  PubMed  PubMed Central  Google Scholar 

Domínguez Conde C, Xu C, Jarvis LB, Rainbow DB, Wells SB, Gomes T, et al. Cross-tissue immune cell analysis reveals tissue-specific features in humans. Science. 2022;376:eabl5197.

Article  PubMed  PubMed Central  Google Scholar 

Eraslan G, Drokhlyansky E, Anand S, Fiskin E, Subramanian A, Slyper M, et al. Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function. Science. 2022;376:eabl4290.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Suo C, Dann E, Goh I, Jardine L, Kleshchevnikov V, Park J-E, et al. Mapping the developing human immune system across organs. Science. 2022;376:eabo0510.

Article  CAS  PubMed  Google Scholar 

Sikkema L, Ramírez-Suástegui C, Strobl DC, Gillett TE, Zappia L, Madissoon E, et al. An integrated cell atlas of the lung in health and disease. Nat Med. 2023;29:1563–77.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Delorey TM, Ziegler CGK, Heimberg G, Normand R, Yang Y, Segerstolpe Å, et al. COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets. Nature. 2021;595:107–13.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Luo G, Gao Q, Zhang S, Yan B. Probing infectious disease by single-cell RNA sequencing: progresses and perspectives. Comput Struct Biotechnol J. 2020;18:2962–71.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yang W, Liu L-B, Liu F-L, Wu Y-H, Zhen Z-D, Fan D-Y, et al. Single-cell RNA sequencing reveals the fragility of male spermatogenic cells to Zika virus-induced complement activation. Nat Commun. 2023;14:2476.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Melms JC, Biermann J, Huang H, Wang Y, Nair A, Tagore S, et al. A molecular single-cell lung atlas of lethal COVID-19. Nature. 2021;595:114–9.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Sungnak W, Huang N, Bécavin C, Be

留言 (0)

沒有登入
gif