A growth selection system for sucrose synthases (SuSy): design and test

Ali MY, Chang Q, Yan Q, Qian Z, Guo X, Thow K, Wu J, Zhang Y, Feng Y (2021) Highly efficient biosynthesis of Glycyrrhetinic Acid glucosides by Coupling of Microbial glycosyltransferase to plant sucrose synthase. Front Bioeng Biotechnol.;9

Bidart GN, Teze D, Jansen CU, Pasutto E, Putkaradze N, Sesay A-M, Fredslund F, Lo Leggio L, Ögmundarson O, Sukumara S, Qvortrup K, Welner DH (2024) Chemoenzymatic indican for light-driven denim dyeing. Nat Commun 15(1):1489

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bowles D, Lim E-K, Poppenberger B, Vaistij FE (2006) GLYCOSYLTRANSFERASES OF LIPOPHILIC SMALL MOLECULES. Annu Rev Plant Biol 57(1):567–597

Article  CAS  PubMed  Google Scholar 

Cavaleiro AM, Kim SH, Seppälä S, Nielsen MT, Nørholm MHH (2015) Accurate DNA Assembly and Genome Engineering with Optimized Uracil Excision Cloning. ACS Synth Biol 4(9):1042–1046

Article  CAS  PubMed  Google Scholar 

Chen L, Sun P, Zhou F, Li Y, Chen K, Jia H, Yan M, Gong D, Ouyang P (2018) Synthesis of rebaudioside D, using glycosyltransferase UGTSL2 and in situ UDP-glucose regeneration. Food Chem 259:286–291

Article  CAS  PubMed  Google Scholar 

Chen T, Chen Z, Wang N, Chu J, Fan B, Cheng C, Qin S, He B (2021) Highly regioselective and efficient biosynthesis of polydatin by an Engineered UGT BL 1- at SuSy Cascade reaction. J Agric Food Chem 69(31):8695–8702

Article  CAS  PubMed  Google Scholar 

Chen K, Lin L, Ma R, Ding J, Pan H, Tao Y, Li Y, Jia H (2023) Identification of sucrose synthase from Micractinium conductrix to favor biocatalytic glycosylation. Front Microbiol.;14

Cho KW, Kim T-S, Le TT, Nguyen HT, Oh YS, Pandey RP, Sohng JK (2019) Altering UDP-glucose Donor substrate specificity of Bacillus licheniformis glycosyltransferase towards TDP-glucose. J Microbiol Biotechnol 29(2):268–273

Article  CAS  PubMed  Google Scholar 

Dalgaard Mikkelsen M, De Andrade Pereira Tavares S, Halkjaer Hansen E, Hansen J, Hicks PM, Houghton-Larsen J, Naesby M, Ostergaard Tange T, Simon E (2012) Recombinant production of steviol glycosides

de Roode BM, Franssen MCR, van der Padt A, Boom RM (2003) Perspectives for the Industrial Enzymatic production of glycosides. Biotechnol Prog 19(5):1391–1402

Article  PubMed  Google Scholar 

Diricks M (2017) Unlocking nature’s glycosylation potential: characterization and engineering of novel sucrose/trehalose synthases. Ghent University, [Ghent]

Google Scholar 

Diricks M, Gutmann A, Debacker S, Dewitte G, Nidetzky B, Desmet T (2016) Sequence determinants of nucleotide binding in sucrose synthase: improving the affinity of a bacterial sucrose synthase for UDP by introducing plant residues. Protein Eng Des Selection

Ebrahim A, Lerman JA, Palsson BO, Hyduke DR (2013) COBRApy: COnstraints-Based Reconstruction and Analysis for Python. BMC Syst Biol 7(1):74

Article  PubMed  PubMed Central  Google Scholar 

Fu J, Wu Z, Zhang L (2019) Clinical applications of the naturally occurring or synthetic glycosylated low molecular weight drugs. p. 487–522

Gu N, Liu S, Qiu C, Zhao L, Pei J (2021) Biosynthesis of 3’-O-methylisoorientin from luteolin by selecting O-methylation/C-glycosylation motif. Enzyme Microb Technol 150:109862

Article  CAS  PubMed  Google Scholar 

Gurobi Optimization L (2023) Gurobi Optimizer Reference Manual

Hofmann R (2000) Responses of nine Trifolium repens L. populations to Ultraviolet-B Radiation: Differential Flavonol Glycoside Accumulation and Biomass Production. Ann Bot 86(3):527–537

Article  CAS  Google Scholar 

Hsu TM, Welner DH, Russ ZN, Cervantes B, Prathuri RL, Adams PD, Dueber JE (2018) Employing a biochemical protecting group for a sustainable indigo dyeing strategy. Nat Chem Biol 14(3):256–261

Article  CAS  PubMed  PubMed Central  Google Scholar 

Johansson KE, Lindorff-Larsen K, Winther JR (2023) Global Analysis of Multi-mutants to improve protein function. J Mol Biol 435(8):168034

Article  CAS  PubMed  Google Scholar 

Kim S, Lindner SN, Aslan S, Yishai O, Wenk S, Schann K, Bar-Even A (2020) Growth of E. Coli on formate and methanol via the reductive glycine pathway. Nat Chem Biol 16(5):538–545

Article  CAS  PubMed  Google Scholar 

Lairson LL, Henrissat B, Davies GJ, Withers SG, Glycosyltransferases (2008) Structures, Functions, and Mechanisms. Annu Rev Biochem [Internet].;77(1):521–55. http://www.annualreviews.org/doi/https://doi.org/10.1146/annurev.biochem.76.061005.092322

Lin Q, Zhu Z, Liu G, Sun C, Lin D, Xue C, Li S, Zhang D, Gao C, Wang Y, Qiu JL (2021) Genome editing in plants with MAD7 nuclease. J Genet Genomics 48(6):444–451

Article  CAS  PubMed  Google Scholar 

Lis H, Sharon N (1993) Protein glycosylation. Structural and functional aspects. Eur J Biochem 218(1):1–27

Article  CAS  PubMed  Google Scholar 

Liu H, Štiglic AD, Mohan T, Kargl R, Kleinschek KS, Nidetzky B (2022) Nano-fibrillated cellulose-based scaffolds for enzyme (co)-immobilization: application to natural product glycosylation by Leloir glycosyltransferases. Int J Biol Macromol 222:217–227

Article  CAS  PubMed  Google Scholar 

Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, Henrissat B (2014) The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res 42(D1):490–495

Article  Google Scholar 

Luo H, Hansen ASL, Yang L, Schneider K, Kristensen M, Christensen U, Christensen HB, Du B, Özdemir E, Feist AM, Keasling JD, Jensen MK, Herrgård MJ, Palsson BO (2019) Coupling S-adenosylmethionine–dependent methylation to growth: design and uses. PLoS Biol 17(3):e2007050

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mohamed ET, Mundhada H, Landberg J, Cann I, Mackie RI, Nielsen AT, Herrgård MJ, Feist AM (2019) Generation of an E. coli platform strain for improved sucrose utilization using adaptive laboratory evolution. Microb Cell Fact 18(1):116

Article  CAS  PubMed  PubMed Central  Google Scholar 

Monk JM, Lloyd CJ, Brunk E, Mih N, Sastry A, King Z, Takeuchi R, Nomura W, Zhang Z, Mori H, Feist AM, Palsson BO (2017) iML1515, a knowledgebase that computes Escherichia coli traits. Nat Biotechnol 35(10):904–908

Article  CAS  PubMed  PubMed Central  Google Scholar 

Nearmnala P, Thanaburakorn M, Panbangred W, Chaiyen P, Hongdilokkul N (2021) An in vivo selection system with tightly regulated gene expression enables directed evolution of highly efficient enzymes. Sci Rep 11(1):11669

Article  CAS  PubMed  PubMed Central  Google Scholar 

Neuenschwander M, Butz M, Heintz C, Kast P, Hilvert D (2007) A simple selection strategy for evolving highly efficient enzymes. Nat Biotechnol 25(10):1145–1147

Article  CAS  PubMed  Google Scholar 

Norrild RK, Johansson KE, O’Shea C, Morth JP, Lindorff-Larsen K, Winther JR (2022) Increasing protein stability by inferring substitution effects from high-throughput experiments. Cell Rep Methods 2(11):100333

Article  CAS  PubMed  PubMed Central  Google Scholar 

Orrego AH, Trobo-Maseda L, Rocha-Martin J, Guisan JM (2017) Immobilization-stabilization of a complex multimeric sucrose synthase from Nitrosomonas europaea. Synthesis of UDP-glucose. Enzyme Microb Technol 105:51–58

Article  CAS  PubMed  Google Scholar 

Pei J, Chen A, Zhao L, Cao F, Li X, Xiao W (2019) Synergistic catalysis of Glycosyltransferase and sucrose synthase to produce isoquercitrin through glycosylation of Quercetin. Chem Nat Compd 55(3):453–457

Article  CAS  Google Scholar 

Phaneuf PV, Zielinski DC, Yurkovich JT, Johnsen J, Szubin R, Yang L, Kim SH, Schulz S, Wu M, Dalldorf C, Ozdemir E, Lennen RM, Palsson BO, Feist AM (2021) Escherichia coli Data-Driven strain design using aggregated adaptive Laboratory Evolution Mutational Data. ACS Synth Biol 10(12):3379–3395

Article  CAS  PubMed  PubMed Central  Google Scholar 

Putkaradze N, Teze D, Fredslund F, Welner DH (2021) Natural product C -glycosyltransferases – a scarcely characterised enzymatic activity with biotechnological potential. Nat Prod Rep 38(3):432–443

Article  CAS  PubMed  Google Scholar 

Putkaradze N, Gala V, Della, Vaitkus D, Teze D, Welner DH (2023) Sequence mining yields 18 phloretin C-glycosyltransferases from plants for the efficient biocatalytic synthesis of nothofagin and phloretin‐di‐C‐glycoside. Biotechnol J.;18(6)

Sahari MA, Asgari S (2013) Effects of plants bioactive compounds on Foods Microbial spoilage and lipid oxidation. Food Sci Technol 1(3):52–61

留言 (0)

沒有登入
gif