Algammal AM, Mabrok M, Ezzat M, Alfifi KJ, Esawy AM, Elmasry N, El-Tarabili RM (2022) Prevalence, antimicrobial resistance (AMR) pattern, virulence determinant and AMR genes of emerging multidrug resistant Edwardsiella tarda in Nile tilapia and African catfish. Aquaculture 548, 737643. https://www.sciencedirect.com/science/article/abs/pii/S0044848621013065

Auguet O, Pijuan M, Borrego CM, Rodriguez-Mozaz S, Triadó-Margarit X, Della Giustina SV, Gutierrez O (2017) Sewers as potential reservoirs of antibiotic resistance. Sci Total Environ 605, 1047–1054. https://www.sciencedirect.com/science/article/abs/pii/S0048969717315711

Bandyopadhyay S, Samanta I (2020) Antimicrobial resistance in agri-food chain and companion animals as a re-emerging menace in post-COVID epoch: low-and middle-income countries perspective and mitigation strategies. Front Vet Sci 7 620. https://doi.org/10.3389/fvets.2020.00620/full

Baniga Z, Hounmanou YMG, Kudirkiene E, Kusiluka LJ, Mdegela RH, Dalsgaard A (2020) Genome-based analysis of extended-spectrum β-lactamase-producing Escherichia coli in the aquatic environment and Nile perch (Lates niloticus) of Lake Victoria, Tanzania. Front Microbiol 11, 108. https://doi.org/10.3389/fmicb.2020.00108

Baniga Z, Mdegela RH, Lisa B, Kusiluka LJ, Dalsgaard A (2019) Prevalence and characterization of Salmonella Waycross and Salmonella enterica subsp. salamae in Nile perch (Lates niloticus) of Lake Victoria, Tanzania. Food Control 100:28–34. https://doi.org/10.1016/j.foodcont.2019.01.006

Article  CAS  Google Scholar 

Barrangou R, Van Der Oost J (2013) CRISPR‒Cas systems. RNA-Mediated Adaptative Immunity in Bacteria and Archaea, 6th ed. Heidelberg SVB, editor. https://doi.org/10.1007/978-3-642-34657-6_1

Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, Horvath P (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315(5819):1709–1712. https://doi.org/10.1126/science.1138140

Article  CAS  PubMed  Google Scholar 

Bikard D, Euler CW, Jiang W, Nussenzweig PM, Goldberg GW, Duportet X, Fischetti VA, Marraffini LA (2014Nov) Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials. Nat Biotechnol 32(11):1146–50. https://doi.org/10.1038/nbt.3043

Article  CAS  PubMed  PubMed Central  Google Scholar 

Biswas S, Brunel JM, Dubus JC, Reynaud-Gaubert M, Rolain JM (2012) Colistin: an update on the antibiotic of the 21st century. Expert Rev Anti Infect Ther 10(8):917–934. https://doi.org/10.1586/eri.12.78

Article  CAS  PubMed  Google Scholar 

Buschmann AH, Tomova A, López A, Maldonado MA, Henríquez LA, Ivanova L ... Cabello FC (2012) Salmon aquaculture and antimicrobial resistance in the marine environment. https://doi.org/10.1371/journal.pone.0042724

Chen BY, Pyla R, Kim TJ, Silva JL, Jung YS (2010) Antibiotic resistance in Listeria species isolated from catfish fillets and processing environment. Lett Appl Microbiol 50(6):626–32. https://doi.org/10.1111/j.1472-765X.2010.02843.x

Article  CAS  PubMed  Google Scholar 

Declercq AM, Tilleman L, Gansemans Y, De Witte C, Haesebrouck F, Van Nieuwerburgh F ... Decostere A (2021) Comparative genomics of Flavobacterium columnare unveils novel insights in virulence and antimicrobial resistance mechanisms. Vet Res 52, 1–13. https://doi.org/10.1186/s13567-021-00899-w

Dong H, Xiang H, Mu D, Wang D, Wang T (2019) Exploiting a conjugative CRISPR/Cas9 system to eliminate plasmid harboring the mcr-1 gene from Escherichia coli. Int J Antimicrob Agents 53(1):1–8. https://doi.org/10.1016/j.ijantimicag.2018.09.017

Article  CAS  PubMed  Google Scholar 

Economic Diplomacy Division India (2019)  https://indbiz.gov.in/indias-marine-fish-landings-rise-15-6-rise-in-2019-report/

Fage C, Lemire N, Moineau S (2021) Delivery of CRISPR-Cas systems using phage-based vectors. Curr Opin Biotechnol 68:174–180. https://doi.org/10.1016/j.copbio.2020.11.012

Article  CAS  PubMed  Google Scholar 

Fagerström A, Mölling P, Khan FA, Sundqvist M, Jass J, Söderquist B (2019) Comparative distribution of extended-spectrum beta-lactamase–producing Escherichia coli from urine infections and environmental waters. PLoS ONE 14(11):e0224861. https://doi.org/10.1371/journal.pone.0224861

Article  CAS  PubMed  PubMed Central  Google Scholar 

FAO report: Small scale fisheries (2021). http://www.fao.org/fishery/fishcode-stf/activities/ssf/en

Finegold C (2009) The importance of fisheries and aquaculture to development. The Royal Swedish Academy of Agriculture and Forestry. https://digitalarchive.worldfishcenter.org/handle/20.500.12348/1445

Gazal LEDS, Brito KCTD, Kobayashi RKT, Nakazato G, Cavalli LS, Otutumi LK, Brito BGD (2020) Antimicrobials and resistant bacteria in global fish farming and the possible risk for public health. Arq Inst Biol 87. https://www.scielo.br/j/aib/a/yDRmj8dDGSg4VNc7xRgx8Xy/?lang=en

Grave K, Markestad A, Bangen M (1996) Comparison in prescribing patterns of antibacterial drugs in salmonid farming in Norway during the periods 1980–1988 and 1989–1994. J Vet Pharmacol Ther 19(3):184–191. https://doi.org/10.1111/j.1365-2885.1996.tb00037.x

Article  CAS  PubMed  Google Scholar 

Grema HA, Geidam YA, Gadzama GB, Ameh JA, Suleiman A, Gulani I (2015) Methicillin Resistant Staphylococcus aureus (MRSA) and Methicillin Resistant Coagulase Negative Staphylococci (MRCoNS) Isolated from fish and fish handlers in Maiduguri, Nigeria. Adv J Food Sci Technol 494–502. https://maxwellsci.com/jp/mspabstract.php?jid=AJFST&doi=ajfst.9.1954

Grenni P (2022) Antimicrobial resistance in rivers: a review of the genes detected and new challenges. Environ Toxicol Chem 41(3):687–714. https://doi.org/10.1002/etc.5289

Article  CAS  PubMed  Google Scholar 

Grevskott DH, Svanevik CS, Sunde M, Wester AL, Lunestad BT (2017) Marine bivalve mollusks as possible indicators of multidrug-resistant Escherichia coli and other species of the Enterobacteriaceae family. Front Microbiol 8:24. https://doi.org/10.3389/fmicb.2017.00024

Article  PubMed  PubMed Central  Google Scholar 

Guan J, Wang W, Sun B (2017) Chromosomal targeting by the type III-A CRISPR-Cas system can reshape genomes in Staphylococcus aureus. Msphere 2(6):e00403-e417. https://doi.org/10.1128/mSphere.00403-17

Article  PubMed  PubMed Central  Google Scholar 

Hamilton TA, Pellegrino GM, Therrien JA, Ham DT, Bartlett PC, Karas BJ ... Edgell DR (2019) Efficient interspecies conjugative transfer of a CRISPR nuclease for targeted bacterial killing. Nat Comm 10(1), 4544. https://www.nature.com/articles/s41467-019-12448-3

Hammad AM, Shimamoto T, Shimamoto T (2014) Genetic characterization of antibiotic resistance and virulence factors in Enterococcus spp. from Japanese retail ready-to-eat raw fish. Food Microbiol 38:62–66. https://doi.org/10.1016/j.fm.2013.08.010

Article  CAS  PubMed  Google Scholar 

Hao M, He Y, Zhang H, Liao XP, Liu YH, Sun J ... Chen L (2020) CRISPR-Cas9-mediated carbapenemase gene and plasmid curing in carbapenem-resistant Enterobacteriaceae. Antimicrob Agents Chemother 64(9), e00843–20. https://doi.org/10.1128/AAC.00843-20

He YZ, Kuang X, Long TF, Li G, Ren H, He B ... Sun J (2022) Re-engineering a mobile-CRISPR/Cas9 system for antimicrobial resistance gene curing and immunization in Escherichia coli. J Antimicrob Chemother 77(1), 74–82. https://doi.org/10.1093/jac/dkab368

Helsens N, Calvez S, Prevost H, Bouju-Albert A, Maillet A, Rossero A ... Magras C (2020) Antibiotic resistance genes and bacterial communities of farmed rainbow trout fillets (Oncorhynchus mykiss). Front Microbiol 11, 590902. https://doi.org/10.3389/fmicb.2020.590902

Heuer OE, Kruse H, Grave K, Collignon P, Karunasagar I, Angulo FJ (2009) Human health consequences of use of antimicrobial agents in aquaculture. Clin Infect Dis 49(8):1248–1253. https://doi.org/10.1086/605667

Article  PubMed  Google Scholar 

Hinchliffe S, Butcher A, Rahman MM (2018) The AMR problem: demanding economies, biological margins, and coproducing alternative strategies. Palgrave Comm 4(1). https://www.nature.com/articles/s41599-018-0195-4

Hoa TTT, Nakayama T, Huyen HM, Harada K, Hinenoya A, Phuong NT, Yamamoto Y (2020) Extended-spectrum beta-lactamase-producing Escherichia coli harboring sul and mcr-1 genes isolates from fish gut contents in the Mekong Delta, Vietnam. Lett Appl Microbiol 71(1):78–85. https://doi.org/10.1111/lam.13222

Article  CAS  PubMed  Google Scholar 

Huang Y, Zhang L, Tiu L, Wang HH (2015) Characterization of antibiotic resistance in commensal bacteria from an aquaculture ecosystem. Front Microbiol 6, 914. https://doi.org/10.3389/fmicb.2015.00914

Huang L, Xu YB, Xu JX, Ling JY, Chen JL, Zhou JL ... Du QP (2017) Antibiotic resistance genes (ARGs) in duck and fish production ponds with integrated or nonintegrated mode. Chemosphere 168, 1107–1114. https://doi.org/10.1016/j.chemosphere.2016.10.096

Ishino Y, Shinagawa H, Makino K, Amemura M, Nakata A (1987) Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product. J Bacteriol 169(12):5429–5433. https://doi.org/10.1128/jb.169.12.5429-5433.1987

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jacobs L, Chenia HY (2007) Characterization of integrons and tetracycline resistance determinants in Aeromonas spp. isolated from South African aquaculture systems. Int J Food Microbiol 114(3):295–306. https://doi.org/10.1016/j.ijfoodmicro.2006.09.030

Article  CAS  PubMed  Google Scholar 

Jena JK, Gopalakrishnan A, Ravishankar CN, Lal KK, Das BK, Das PC ... Madhu VR (2022) Achievements in fisheries and aquaculture in Independent India. http://eprints.cmfri.org.in/id/eprint/16084

Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E (2012) A programmable dual-RNA–guided DNA endonuclease in adaptive bacterial immunity. science 337(6096):816–821. https://doi.org/10.1126/science.1225829

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kang YK, Kwon K, Ryu JS, Lee HN, Park C, Chung HJ (2017) Nonviral genome editing based on a polymer-derivatized CRISPR nanocomplex for targeting bacterial pathogens and antibiotic resistance. Bioconjugate Chem 28(4):957–967. https://doi.org/10.1021/acs.bioconjchem.6b00676

Article  CAS  Google Scholar 

Kiga K, Tan XE, Ibarra-Chávez R, Watanabe S, Aiba Y, Sato’o Y ... Cui L (2020) Development of CRISPR-Cas13a-based antimicrobials capable of sequence-specific killing of target bacteria. Nat Comm 11(1), 2934. https://www.nature.com/articles/s41467-020-16731-6

Kim JS, Cho DH, Park M, Chung WJ, Shin D, Ko KS, Kweon DH (2016) CRISPR/Cas9-mediated resensitization of antibiotic-resistant Escherichia coli harboring extended-spectrum β-lactamases. J Microbiol Biotechn 26(2), 394–401. https://www.koreascience.or.kr/article/JAKO201614735099077.page

Kulkarni AP, Nagvekar VC, Veeraraghavan B, Warrier AR, Ts D, Ahdal J, Jain R (2019) Current perspectives on treatment of gram-positive infections in India: what is the way forward?. Interdiscip Perspect Infect Dis 2019. https://doi.org/10.1155/2019/7601847

Labella A, Gennari M, Ghidini V, Trento I, Manfrin A, Borrego JJ, Lleo MM (2013) High incidence of antibiotic multiresistant bacteria in coastal areas dedicated to fish farming. Mar Pollut Bull 70(1–2):197–203. https://doi.org/10.1016/j.marpolbul.2013.02.037

Article  CAS  PubMed  Google Scholar 

Lakhundi S, Zhang K (2018) Methicillin-resistant Staphylococcus aureus: molecular characterization, evolution, and epidemiology. Clin Microbiol Rev 31(4):e00020-e118. https://doi.org/10.1155/2019/7601847

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lauritsen I, Porse A, Sommer MO, Nørholm MH (2017) A versatile one-step CRISPR-Cas9 based approach to plasmid-curing. Microb Cell Fact 16:1–10. https://doi.org/10.1186/s12934-017-0748-z

Article  CAS  Google Scholar 

Laxminarayan R, Chaudhury RR (2016) Antibiotic resistance in India: drivers and opportunities for action. PLoS Med 13(3):e1001974. https://doi.org/10.1371/journal.pmed.1001974

Article  PubMed  PubMed Central  Google Scholar 

Ledford H, Callaway E (2020) Pioneers of CRISPR gene editing win chemistry Nobel. Nature, 586(7829), 346–347. https://ppgclinicamedica.fmrp.usp.br/wp-content/uploads/sites/154/2021/04/Artigo-para-Prova-PPGCM-ABRIL-2021.pdf

Lim YH, Wong FT, Yeo WL, Ching KC, Lim YW, Heng E, Chen S, Tsai D-J, Lauderdale T-L, Shia K-S, Ho YS, Hoon S, Ang EL, Zhang MM, Zhao H (2018) Auroramycin: A po tent antibiotic from Streptomyces roseosporus by CRISPR-Cas9 acti- vation. Chem Bio Chem 19(16):1716–1719. https://doi.org/10.1002/cbic.201800266

Article  CAS  Google Scholar 

Liu Q, Jiang Y, Shao L, Yang P, Sun B, Yang S, Chen D (2017) CRISPR/Cas9-based efficient genome editing in Staphylococcus aureus. Acta Biochim Biophys Sin 49(9):764–770. https://doi.org/10.1093/abbs/gmx074

Article  CAS  PubMed