Castagnola M, Scarano E, Passali GCC, Messana I, et al. Salivary biomarkers and proteomics: future diagnostic and clinical utilities. Acta Otorhinolaryngol Ital. 2017;37:94–101.
Article CAS PubMed PubMed Central Google Scholar
Lau WW, Hardt M, Zhang YH, Freire M, Ruhl S. The human salivary proteome wiki: a community-driven research platform. J Dent Res. 2021;100:1510–9.
Article CAS PubMed PubMed Central Google Scholar
Keijser BJF, Zaura E, Huse SM, van der Vossen JMBM, Schuren FHJ, Montijn RC, ten Cate JM, Crielaard W, et al. Pyrosequencing analysis of the Oral Microflora of healthy adults. J Dental Res. 2008;87:1016–20.
Nasidze I, Li J, Quinque D, Tang K, Stoneking M. Global diversity in the human salivary microbiome. Genome Res. 2009;19:636–43.
Article CAS PubMed PubMed Central Google Scholar
Bik EM, Long CD, Armitage GC, Loomer P, et al. Bacterial diversity in the oral cavity of 10 healthy individuals. ISME J. 2010;4:962–74.
Zaura E, Keijser BJF, Huse SM, Crielaard W. Defining the healthy “core microbiome” of oral microbial communities. BMC Microbiol. 2009;9:259.
Article PubMed PubMed Central Google Scholar
Moussa DG, Ahmad P, Mansour TA, Siqueira WL. Current state and challenges of the global outcomes of dental caries research in the meta-omics era. Front Cell Infect Microbiol. 2022;12:887907.
Article CAS PubMed PubMed Central Google Scholar
Rudney JDD, Xie H, Rhodus NLL, Ondrey FGG, Griffin TJJ. A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry. Mol Oral Microbiol. 2010;25:38–49.
Article CAS PubMed PubMed Central Google Scholar
Attaway AH, Scheraga RG, Bhimraj A, Biehl M, Hatipoğlu U. Severe covid-19 pneumonia: pathogenesis and clinical management. BMJ. 2021. https://doi.org/10.1136/bmj.n436.
Shakaib B, Zohra T, Ikram A, Shakaib MB, et al. A comprehensive review on clinical and mechanistic pathophysiological aspects of COVID-19 Malady: how far have we come? Virol J. 2021;18:120.
Article CAS PubMed PubMed Central Google Scholar
Mun D-G, Vanderboom PM, Madugundu AK, Garapati K, et al. DIA-based proteome profiling of nasopharyngeal swabs from COVID-19 patients. J Proteome Res. 2021;20:4165–75.
Article CAS PubMed Google Scholar
Zhou Y, Zhou B, Pache L, Chang M, et al. Metascape provides a biologist-oriented resource for the analysis of systems-level datasets. Nat Commun. 2019. https://doi.org/10.1038/s41467-019-09234-6.
Article PubMed PubMed Central Google Scholar
Hotter D, Bosso M, Jønsson KL, Krapp C, et al. IFI16 targets the transcription factor Sp1 to suppress HIV-1 transcription and latency reactivation. Cell Host Microbe. 2019;25:858-872.e13.
Article CAS PubMed PubMed Central Google Scholar
Ren F, Ren J-H, Song C-L, Tan M, et al. LncRNA HOTAIR modulates hepatitis B virus transcription and replication by enhancing SP1 transcription factor. Clin Sci. 2020;134:3007–22.
Khalil MI, Hay J, Ruyechan WT. Cellular transcription factors Sp1 and Sp3 suppress varicella-zoster virus origin-dependent DNA replication. J Virol. 2008;82:11723–33.
Article CAS PubMed PubMed Central Google Scholar
Xu J, Mao J, Han X, Shi F, et al. Porcine epidemic diarrhea virus inhibits HDAC1 expression to facilitate its replication via binding of its nucleocapsid protein to host transcription factor Sp1. J Virol. 2021;95: e0085321.
Nam C-H, Rabbitts TH. The role of LMO2 in development and in T cell leukemia after chromosomal translocation or retroviral insertion. Mol Ther. 2006;13:15–25.
Article CAS PubMed Google Scholar
Pike-Overzet K, de Ridder D, Weerkamp F, Baert MRM, et al. Ectopic retroviral expression of LMO2, but not IL2Rγ, blocks human T-cell development from CD34+ cells: implications for leukemogenesis in gene therapy. Leukemia. 2007;21:754–63.
Article CAS PubMed Google Scholar
Hesari A, Ghasemi F, Salarinia R, Biglari H, Tabar Molla Hassan A, Abdoli V, Mirzaei H. Effects of curcumin on NF-κB, AP- 2018, 119: 7898
Cheng C-Y, Tseng H-H, Chiu H-C, Chang C-D, et al. Bovine ephemeral fever virus triggers autophagy enhancing virus replication via upregulation of the Src/JNK/AP1 and PI3K/Akt/NF-κB pathways and suppression of the PI3K/Akt/mTOR pathway. Vet Res. 2019;50:79.
Article PubMed PubMed Central Google Scholar
Miller EH, Annavajhala MK, Chong AM, Park H, et al. Oral microbiome alterations and SARS-CoV-2 saliva viral load in patients with COVID-19. Microbiol Spectr. 2021;9:e00055-e121.
Article CAS PubMed PubMed Central Google Scholar
Yeoh YK, Zuo T, Lui GC-Y, Zhang F, et al. Gut microbiota composition reflects disease severity and dysfunctional immune responses in patients with COVID-19. Gut. 2021;70:698–706.
Article CAS PubMed Google Scholar
Armstrong AJS, Parmar V, Blaser MJ. Assessing saliva microbiome collection and processing methods. npj Biofilms Microb. 2021;7:81.
Zuo T, Zhang F, Lui GCY, Yeoh YK, et al. Alterations in gut microbiota of patients with COVID-19 during time of hospitalization. Gastroenterology. 2020;159:944-955.e8.
Article CAS PubMed Google Scholar
He F, Zhang T, Xue K, Fang Z, et al. Fecal multi-omics analysis reveals diverse molecular alterations of gut ecosystem in COVID-19 patients. Anal Chim Acta. 2021;1180:338881.
Article CAS PubMed PubMed Central Google Scholar
Zhong W, Altay O, Arif M, Edfors F, et al. Next generation plasma proteome profiling of COVID-19 patients with mild to moderate symptoms. EBioMedicine. 2021;74:103723.
Article CAS PubMed PubMed Central Google Scholar
Ayass MA, Cao W, Zhang J, Dai J, et al. Noninvasive nasopharyngeal proteomics of COVID-19 patient identify abnormalities related to complement and coagulation cascade and mucosal immune system. PLoS ONE. 2022;17: e0274228.
Article CAS PubMed PubMed Central Google Scholar
Banerjee A, Pai MGJ, Singh A, Nissa MU, Srivastava S. Mass spectrometry and proteome analysis to identify SARS-CoV-2 protein from COVID-19 patient swab samples. STAR Protoc. 2022;3:101177.
Article CAS PubMed PubMed Central Google Scholar
Gouveia D, Miotello G, Gallais F, Gaillard J-C, et al. Proteotyping SARS-CoV-2 virus from nasopharyngeal swabs: a proof-of-concept focused on a 3 min mass spectrometry window. J Proteome Res. 2020;19:4407–16.
Article CAS PubMed Google Scholar
Ghosh S, Parikh S, Nissa MU, Acharjee A, et al. Semen proteomics of COVID-19 convalescent men reveals disruption of key biological pathways relevant to male reproductive function. ACS Omega. 2022;7:8601–12.
Article CAS PubMed PubMed Central Google Scholar
Fanelli V, Vlachou A, Ghannadian S, Simonetti U, et al. Acute respiratory distress syndrome: new definition, current and future therapeutic options. J Thorac Dis. 2013;5:326–34.
PubMed PubMed Central Google Scholar
Pagani L, Chinello C, Mahajneh A, Clerici F, et al. Untargeted mass spectrometry approach to study SARS-CoV-2 proteins in human plasma and saliva proteome. BioChem. 2022;2:64–83.
Pappa E, Vastardis H, Mermelekas G, Gerasimidi-Vazeou A, et al. Saliva Proteomics analysis offers insights on type 1 diabetes pathology in a pediatric population. Front Physiol. 2018;9:444.
Article PubMed PubMed Central Google Scholar
Rao PV, Reddy AP, Lu X, Dasari S, et al. Proteomic identification of salivary biomarkers of type-2 diabetes. J Proteome Res. 2009;8:239–45.
Article CAS PubMed Google Scholar
Mata AD, Marques D, Rocha S, Francisco H, et al. Effects of diabetes mellitus on salivary secretion and its composition in the human. Mol Cell Biochem. 2004;261:137–42.
Article CAS PubMed Google Scholar
Chambon C, Neyraud E, Sayd T, Bros P, et al. The salivary proteome reflects some traits of dietary habits in diabetic and non-diabetic older adults. Eur J Nutr. 2021;60:4331–44.
留言 (0)