Comparative transcriptomic analysis provides insights into the genetic networks regulating oil differential production in oil crops

Zafar S, Li YL, Li NN, Zhu KM, Tan XL. Recent advances in enhancement of oil content in oilseed crops. J Biotechnol. 2019;301:35–44.

Article  CAS  PubMed  Google Scholar 

Chmielewska A, Kozlowska M, Rachwal D, Wnukowski P, Amarowicz R, Nebesny E, Rosicka-Kaczmarek J. Canola/rapeseed protein - nutritional value, functionality and food application: a review. Crit Rev Food Sci Nutr. 2021;61(22):3836–56.

Article  CAS  PubMed  Google Scholar 

Haun W, Coffman A, Clasen BM, Demorest ZL, Lowy A, Ray E, Retterath A, Stoddard T, Juillerat A, Cedrone F, et al. Improved soybean oil quality by targeted mutagenesis of the fatty acid desaturase 2 gene family. Plant Biotechnol J. 2014;12(7):934–40.

Article  CAS  PubMed  Google Scholar 

Riaz T, Iqbal MW, Mahmood S, Yasmin I, Leghari AA, Rehman A, Mushtaq A, Ali K, Azam M, Bilal M. Cottonseed oil: a review of extraction techniques, physicochemical, functional, and nutritional properties. Crit Rev Food Sci Nutr. 2023;63(9):1219–37.

Iggman D, Gustafsson IB, Berglund L, Vessby B, Marckmann P, Riserus U. Replacing dairy fat with rapeseed oil causes rapid improvement of hyperlipidaemia: a randomized controlled study. J Intern Med. 2011;270(4):356–64.

Article  CAS  PubMed  Google Scholar 

Russo M, Yan F, Stier A, Klasen L, Honermeier B. Erucic acid concentration of rapeseed (Brassica napus L.) oils on the German food retail market. Food Sci Nutr. 2021;9(7):3664–72.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Melo D, Alvarez-Orti M, Nunes MA, Costa ASG, Machado S, Alves RC, Pardo JE, Oliveira M. Whole or defatted sesame seeds (Sesamum indicum L.)? The effect of cold pressing on oil and cake quality. Foods. 2021;10(9):2108.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li-Beisson Y, Shorrosh B, Beisson F, Andersson MX, Arondel V, Bates PD, Baud S, Bird D, Debono A, Durrett TP, et al. Acyl-lipid metabolism. Arabidopsis Book. 2013;11:e0161.

Article  PubMed  PubMed Central  Google Scholar 

Jako C, Kumar A, Wei Y, Zou J, Barton DL, Giblin EM, Covello PS, Taylor DC. Seed-specific over-expression of an Arabidopsis cDNA encoding a diacylglycerol acyltransferase enhances seed oil content and seed weight. Plant Physiol. 2001;126(2):861–74.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zhang M, Fan J, Taylor DC, Ohlrogge JB. DGAT1 and PDAT1 acyltransferases have overlapping functions in Arabidopsis triacylglycerol biosynthesis and are essential for normal pollen and seed development. Plant Cell. 2009;21(12):3885–901.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Reverdatto S, Beilinson V, Nielsen NC. A multisubunit acetyl coenzyme a carboxylase from soybean. Plant Physiol. 1999;119(3):961–78.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wang M, Garneau MG, Poudel AN, Lamm D, Koo AJ, Bates PD, Thelen JJ. Overexpression of pea alpha-carboxyltransferase in Arabidopsis and camelina increases fatty acid synthesis leading to improved seed oil content. Plant J. 2022;110(4):1035–46.

Article  CAS  PubMed  Google Scholar 

Schnurr JA, Shockey JM, de Boer GJ, Browse JA. Fatty acid export from the chloroplast. Molecular characterization of a major plastidial acyl-coenzyme a synthetase from Arabidopsis. Plant Physiol. 2002;129(4):1700–9.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zhao L, Katavic V, Li F, Haughn GW, Kunst L. Insertional mutant analysis reveals that long-chain acyl-CoA synthetase 1 (LACS1), but not LACS8, functionally overlaps with LACS9 in Arabidopsis seed oil biosynthesis. Plant J. 2010;64(6):1048–58.

Article  CAS  PubMed  Google Scholar 

Baud S, Lepiniec L. Physiological and developmental regulation of seed oil production. Prog Lipid Res. 2010;49(3):235–49.

Article  CAS  PubMed  Google Scholar 

Schwender J, Hay JO. Predictive modeling of biomass component tradeoffs in Brassica napus developing oilseeds based on in silico manipulation of storage metabolism. Plant Physiol. 2012;160(3):1218–36.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen W, Chen L, Zhang X, Yang N, Guo J, Wang M, Ji S, Zhao X, Yin P, Cai L, et al. Convergent selection of a WD40 protein that enhances grain yield in maize and rice. Science. 2022;375(6587):eabg7985.

Article  CAS  PubMed  Google Scholar 

Wang W, Xu M, Wang G, Galili G. New insights into the metabolism of aspartate-family amino acids in plant seeds. Plant Reprod. 2018;31(3):203–11.

Article  CAS  PubMed  Google Scholar 

Ruprecht C, Vaid N, Proost S, Persson S, Mutwil M. Beyond genomics: studying evolution with gene coexpression networks. Trends Plant Sci. 2017;22(4):298–307.

Article  CAS  PubMed  Google Scholar 

Kawahara Y, de la Bastide M, Hamilton JP, Kanamori H, McCombie WR, Ouyang S, Schwartz DC, Tanaka T, Wu JZ, Zhou SG, et al. Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice. 2013;6:4.

Article  PubMed  PubMed Central  Google Scholar 

Jiao Y, Peluso P, Shi J, Liang T, Stitzer MC, Wang B, Campbell MS, Stein JC, Wei X, Chin CS, et al. Improved maize reference genome with single-molecule technologies. Nature. 2017;546(7659):524–7.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wang L, Xia Q, Zhang Y, Zhu X, Zhu X, Li D, Ni X, Gao Y, Xiang H, Wei X, et al. Updated sesame genome assembly and fine mapping of plant height and seed coat color QTLs using a new high-density genetic map. BMC Genomics. 2016;17:31.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hu Y, Chen J, Fang L, Zhang Z, Ma W, Niu Y, Ju L, Deng J, Zhao T, Lian J, et al. Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton. Nat Genet. 2019;51(4):739–48.

Article  CAS  PubMed  Google Scholar 

Valliyodan B, Cannon SB, Bayer PE, Shu S, Brown AV, Ren L, Jenkins J, Chung CY, Chan TF, Daum CG, et al. Construction and comparison of three reference-quality genome assemblies for soybean. Plant J. 2019;100(5):1066–82.

Article  CAS  PubMed  Google Scholar 

Chen X, Tong C, Zhang X, Song A, Hu M, Dong W, Chen F, Wang Y, Tu J, Liu S, et al. A high-quality Brassica napus genome reveals expansion of transposable elements, subgenome evolution and disease resistance. Plant Biotechnol J. 2021;19(3):615–30.

Article  CAS  PubMed  Google Scholar 

Chen J, Zeng B, Zhang M, Xie S, Wang G, Hauck A, Lai J. Dynamic transcriptome landscape of maize embryo and endosperm development. Plant Physiol. 2014;166(1):252–64.

Article  PubMed  PubMed Central  Google Scholar 

Walter MH, Grima-Pettenati J, Grand C, Boudet AM, Lamb CJ. Cinnamyl-alcohol dehydrogenase, a molecular marker specific for lignin synthesis: cDNA cloning and mRNA induction by fungal elicitor. Proc Natl Acad Sci U S A. 1988;85(15):5546–50.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chaudhary DP, Kumar S, Yadav OP. Nutritive value of maize: improvements, applications and constraints. In: Chaudhary DP, Kumar S, Yadav OP, editors. Maize: nutrition dynamics and novel uses. New Delhi: Springer India; 2014. p. 3–17.

Chapter  Google Scholar 

Rawsthorne S. Carbon flux and fatty acid synthesis in plants. Prog Lipid Res. 2002;41(2):182–96.

Article  CAS  PubMed  Google Scholar 

Chen M, Zhang B, Li C, Kulaveerasingam H, Chew FT, Yu H. TRANSPARENT TESTA GLABRA1 regulates the accumulation of seed storage reserves in Arabidopsis. Plant Physiol. 2015;169(1):391–402.

Article  PubMed  PubMed Central  Google Scholar 

He S, Hao X, Wang S, Zhou W, Ma Q, Lu X, Chen L, Zhang P. Starch synthase II plays a crucial role in starch biosynthesis and the formation of multienzyme complexes in cassava storage roots. J Exp Bot. 2022;73(8):2540–57.

Article  CAS  PubMed  Google Scholar 

Baysal C, He W, Drapal M, Villorbina G, Medina V, Capell T, Khush GS, Zhu C, Fraser PD, Christou P. Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming. Proc Natl Acad Sci U S A. 2020;117(42):26503–12.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wang SM, Lue WL, Yu TS, Long JH, Wang CN, Eimert K, Chen J. Characterization of ADG1, an Arabidopsis locus encoding for ADPG pyrophosphorylase small subunit, demonstrates that the presence of the small subunit is required for large subunit stability. Plant J. 1998;13(1):63–70.

Article  CAS  PubMed  Google Scholar 

Andre C, Froehlich JE, Moll MR, Benning C. A heteromeric plastidic pyruvate kinase complex involved in seed oil biosynthesis in Arabidopsis. Plant Cell. 2007;19(6):2006–22.

Article  CAS  PubMed  PubMed Central 

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