Isolation and characterization of novel Staphylococcus aureus bacteriophage Hesat from dairy origin

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic Local Alignment Search Tool. J Mol Biol 215(3):403–410. https://doi.org/10.1016/S0022-2836(05)80360-2

Article  CAS  PubMed  Google Scholar 

Altschul SF, Wootton JC, Gertz EM, Agarwala R, Morgulis A, Schaffer AA, Yu Y-K (2005) Protein database searches using compositionally adjusted substitution matrices. FEBS J 272:5101–5109. https://doi.org/10.1111/j.1742-4658.2005.04945.x

Article  CAS  PubMed  PubMed Central  Google Scholar 

Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS (2016) PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res 44:W16–W21. https://doi.org/10.1093/nar/gkw387

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bae T, Baba T, Hiramatsu K, Schneewind O (2006) Prophages of Staphylococcus aureus Newman and their contribution to virulence. Mol Microbiol 62:1035–1047. https://doi.org/10.1111/j.1365-2958.2006.05441.x

Article  CAS  PubMed  Google Scholar 

Becker SC, Dong S, Baker JR, Foster-Frey J, Pritchard DG, Donovan DM (2009a) LysK CHAP endopeptidase domain is required for lysis of live staphylococcal cells. FEMS Microbiol Lett 294:52–60. https://doi.org/10.1111/j.1574-6968.2009.01541.x

Article  CAS  PubMed  Google Scholar 

Becker SC, Foster-Frey J, Stodola AJ, Anacker D, Donovan DM (2009b) Differentially conserved staphylococcal SH3b_5 cell wall binding domains confer increased staphylolytic and streptolytic activity to a streptococcal prophage endolysin domain. Gene 443:32–41. https://doi.org/10.1016/j.gene.2009.04.023

Article  CAS  PubMed  Google Scholar 

Bortolaia V, Kaas RS, Ruppe E, Roberts MC, Schwarz S, Cattoir V, Philippon A, Allesoe RL, Rebelo AR, Florensa AF, Fagelhauer L, Chakraborty T, Neumann B, Werner G, Bender JK, Stingl K, Nguyen M, Coppens J, Xavier BB, Malhotra-Kumar S, Westh H, Pinholt M, Anjum MF, Duggett NA, Kempf I, Nykäsenoja S, Olkkola S, Wieczorek K, Amaro A, Clemente L, Mossong J, Losch S, Ragimbeau C, Lund O, Aarestrup FM (2020) ResFinder 4.0 for predictions of phenotypes from genotypes. J Antimicrob Chemother 75:3491–3500. https://doi.org/10.1093/jac/dkaa345

Article  CAS  PubMed  PubMed Central  Google Scholar 

Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomason JA, Stevens R, Vonstein V, Wattam AR, Xia F (2015) RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep 5:8365. https://doi.org/10.1038/srep08365

Article  CAS  PubMed  PubMed Central  Google Scholar 

Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL (2009) BLAST+: architecture and applications. BMC Bioinformatics 10:421. https://doi.org/10.1186/1471-2105-10-421

Article  CAS  PubMed  PubMed Central  Google Scholar 

Cervera-Alamar M, Guzmán-Markevitch K, Žiemytė M, Ortí L, Bernabé-Quispe P, Pineda-Lucena A, Pemán J, Tormo-Mas MÁ (2018) Mobilisation mechanism of pathogenicity islands by endogenous phages in Staphylococcus aureus clinical strains. Sci Rep 8:16742. https://doi.org/10.1038/s41598-018-34918-2

Article  CAS  PubMed  PubMed Central  Google Scholar 

Christie GE, Matthews AM, King DG, Lane KD, Olivarez NP, Tallent SM, Gill SR, Novick RP (2010) The complete genomes of Staphylococcus aureus bacteriophages 80 and 80α—implications for the specificity of SaPI mobilization. Virology 407:381–390. https://doi.org/10.1016/j.virol.2010.08.036

Article  CAS  PubMed  Google Scholar 

Clokie MRJ, Kropinski AM (eds) (2009) Bacteriophages. Humana Press, Totowa, New Jersey

Cuny C, Wieler L, Witte W (2015) Livestock-associated MRSA: the impact on humans. Antibiotics 4:521–543. https://doi.org/10.3390/antibiotics4040521

Article  PubMed  PubMed Central  Google Scholar 

Cuny C, Layer F, Strommenger B, Witte W (2011) Rare occurrence of methicillin-resistant Staphylococcus aureus CC130 with a novel mecA homologue in humans in Germany. PloS one 6(9):e24360. https://doi.org/10.1371/journal.pone.0024360

Dabul ANG, Camargo ILBC (2014) Clonal complexes of Staphylococcus aureus: all mixed and together. FEMS Microbiol Lett 351:7–8. https://doi.org/10.1111/1574-6968.12358

Article  CAS  PubMed  Google Scholar 

Decimo M, Morandi S, Silvetti T, Brasca M (2014) Characterization of gram-negative psychrotrophic bacteria isolated from Italian bulk tank milk: gram-negative psychrotrophs in milk. J Food Sci 79:M2081–M2090. https://doi.org/10.1111/1750-3841.12645

Article  CAS  PubMed  Google Scholar 

Dedrick RM, Guerrero-Bustamante CA, Garlena RA, Russell DA, Ford K, Harris K, Gilmour KC, Soothill J, Jacobs-Sera D, Schooley RT, Hatfull GF, Spencer H (2019) Engineered bacteriophages for treatment of a patient with a disseminated drug-resistant Mycobacterium abscessus. Nat Med 25:730–733. https://doi.org/10.1038/s41591-019-0437-z

Article  CAS  PubMed  PubMed Central  Google Scholar 

Everitt RG, Didelot X, Batty EM, Miller RR, Knox K, Young BC, Bowden R, Auton A, Votintseva A, Larner-Svensson H, Charlesworth J, Golubchik T, Ip CLC, Godwin H, Fung R, Peto TEA, Walker AS, Crook DW, Wilson DJ (2014) Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus. Nat Commun 5:3956. https://doi.org/10.1038/ncomms4956

Article  CAS  PubMed  Google Scholar 

Feil EJ, Cooper JE, Grundmann H, Robinson DA, Enright MC, Berendt T, Peacock SJ, Smith JM, Murphy M, Spratt BG, Moore CE, Day NPJ (2003) How clonal is Staphylococcus aureus? J Bacteriol 185:3307–3316. https://doi.org/10.1128/JB.185.11.3307-3316.2003

Article  CAS  PubMed  PubMed Central  Google Scholar 

Finn RD, Clements J, Eddy SR (2011) HMMER web server: interactive sequence similarity searching. Nucleic Acids Res 39:W29–W37. https://doi.org/10.1093/nar/gkr367

Article  CAS  PubMed  PubMed Central  Google Scholar 

Foster SJ (2004) 257 - N-Acetylmuramoyl-l-alanine amidase. In: Barrett AJ, Rawlings ND, Woessner JF (eds) Handbook of proteolytic enzymes, 2nd edn. Academic Press, London, pp 866–868

Chapter  Google Scholar 

Franco A, Hasman H, Iurescia M, Lorenzetti R, Stegger M, Pantosti A, Feltrin F, Ianzano A, Porrero MC, Liapi M, Battisti A (2011) Molecular characterization of spa type t127, sequence type 1 methicillin-resistant Staphylococcus aureus from pigs. J Antimicrob Chemother 66:1231–1235. https://doi.org/10.1093/jac/dkr115

Article  CAS  PubMed  Google Scholar 

García P, Madera C, Martínez B, Rodríguez A, Evaristo Suárez J (2009) Prevalence of bacteriophages infecting Staphylococcus aureus in dairy samples and their potential as biocontrol agents. J Dairy Sci 92:3019–3026. https://doi.org/10.3168/jds.2008-1744

Article  CAS  PubMed  Google Scholar 

Genestier A-L, Michallet M-C, Prévost G, Bellot G, Chalabreysse L, Peyrol S, Thivolet F, Etienne J, Lina G, Vallette FM, Vandenesch F, Genestier L (2005) Staphylococcus aureus Panton-Valentine leukocidin directly targets mitochondria and induces Bax-independent apoptosis of human neutrophils. J Clin Invest 115:3117–3127. https://doi.org/10.1172/JCI22684

Article  CAS  PubMed  PubMed Central  Google Scholar 

Goerke C, Pantucek R, Holtfreter S, Schulte B, Zink M, Grumann D, Bröker BM, Doskar J, Wolz C (2009) Diversity of prophages in dominant Staphylococcus aureus clonal lineages. J Bacteriol 191:3462–3468. https://doi.org/10.1128/JB.01804-08

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gordillo Altamirano FL, Barr JJ (2019) Phage therapy in the postantibiotic era. Clin Microbiol Rev 32(2):e00066-18 https://doi.org/10.1128/cmr.00066-18.

Green MR, Sambrook J, Sambrook J (2012) Molecular cloning: a laboratory manual, 4th ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

Grundmann H, Aanensen DM, van den Wijngaard CC, Spratt BG, Harmsen D, Friedrich AW, the European Staphylococcal Reference Laboratory Working Group (2010) Geographic distribution of Staphylococcus aureus causing invasive infections in Europe: a molecular-epidemiological analysis. PLoS Med 7:e1000215https://doi.org/10.1371/journal.pmed.1000215

Gutiérrez D, Fernández L, Rodríguez A, García P (2018) Are phage lytic proteins the secret weapon to kill Staphylococcus aureus? mbio 9:e01923 17. https://doi.org/10.1128/mBio.01923-17

Article  PubMed  PubMed Central  Google Scholar 

Hallgren J, Tsirigos KD, Pedersen MD, Almagro Armenteros JJ, Marcatili P, Nielsen H, Krogh A, Winther O (2022) DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks. Bioinformatics. https://doi.org/10.1101/2022.04.08.487609

Article  Google Scholar 

Hasman H, Moodley A, Guardabassi L, Stegger M, Skov RL, Aarestrup FM (2010) Spa type distribution in Staphylococcus aureus originating from pigs, cattle and poultry. Vet Microbiol 141:326–331. https://doi.org/10.1016/j.vetmic.2009.09.025

Article  CAS  PubMed  Google Scholar 

Heinrich J, Velleman M, Schuster H (1995) The tripartite immunity system of phages P1 and P7. FEMS Microbiol Rev 17:121–126. https://doi.org/10.1111/j.1574-6976.1995.tb00193.x

Article  CAS  PubMed  Google Scholar 

Huber H, Koller S, Giezendanner N, Stephan R, Zweifel C (2010) Prevalence and characteristics of meticillin-resistant Staphylococcus aureus in humans in contact with farm animals, in livestock, and in food of animal origin, Switzerland, 2009. Euro Surveill 15(16):19542. https://doi.org/10.5167/uzh-41122

Hummerjohann J, Naskova J, Baumgartner A, Graber HU (2014) Enterotoxin-producing Staphylococcus aureus genotype B as a major contaminant in Swiss raw milk cheese. J Dairy Sci 97:1305–1312. https://doi.org/10.3168/jds.2013-7643

Article  CAS  PubMed  Google Scholar 

Humphrey S, San Millán Á, Toll-Riera M, Connolly J, Flor-Duro A, Chen J, Ubeda C, MacLean RC, Penadés JR (2021) Staphylococcal phages and pathogenicity islands drive plasmid evolution. Nat Commun 12:5845. https://doi.org/10.1038/s41467-021-26101-5

Article  CAS  PubMed  PubMed Central 

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