Using multi-omics to explore the effect of Bacillus velezensis SAAS-63 on resisting nutrient stress in lettuce

Ahmad P, Latef AAA, Hashem A, AbdAllah EF, Tran LSP (2016) Nitric oxide mitigates salt stress by regulating levels of osmolytes and antioxidant enzymes in chickpea. Front Plant Sci 7(868):11. https://doi.org/10.3389/fpls.2016.00347

Article  Google Scholar 

Bai B, Yang X, Zhao Q, Liu R, Ren J (2020) Inoculations with Pseudomonas fluorescens and Bacillus cereus affect the soil enzyme activity, growth and rhizosphere microbial diversity of Taxus chinensis var. mairei. Plant Soil 455(1–2):4152. https://doi.org/10.1007/s11104-020-04660-8

Article  CAS  Google Scholar 

Baliyarsingh B, Dash B, Nayak S, Nayak SK (2022) Soil Verrucomicrobia and their role in sustainable agriculture. Adv Agric Ind Microbiol 105–124. https://doi.org/10.1007/978-981-16-8918-56

Bisht N, Mishra SK, Chauhan PS (2020) Bacillus amyloliquefaciens inoculation alters physiology of rice (Oryza sativa L var IR-36) through modulating carbohydrate metabolism to mitigate stress induced by nutrient starvation. Int J Biol Macromol 143:937–951. https://doi.org/10.1016/j.ijbiomac.2019.09.154

Article  CAS  PubMed  Google Scholar 

Cheng H, Yuan M, Tang L, Shen Y, Yu Q, Li S (2022) Integrated microbiology and metabolomics analysis reveal responses of soil microorganisms and metabolic functions to phosphorus fertilizer on semiarid farm. Sci Total Environ 817:152878. https://doi.org/10.1016/j.scitotenv.2021.152878

Article  CAS  PubMed  Google Scholar 

Chutia R, Abel S, Ziegler J (2019) Iron and phosphate deficiency regulators concertedly control coumarin profiles in Arabidopsis thaliana roots during iron, phosphate, and combined deficiencies. Front Plant Sci 10:113. https://doi.org/10.3389/fpls.2019.00113

Article  PubMed  PubMed Central  Google Scholar 

Du PP, Yin B, Cao Y, Han R, Ji J, He X, Liang B, Xu J (2022) Beneficial effects of exogenous melatonin and dopamine on low nitrate stress in Malus hupehensis. Front Plant Sci 12:807472. https://doi.org/10.3389/fpls.2021.807472

Article  PubMed  PubMed Central  Google Scholar 

Du C, Xu R, Zhao X, Liu Y, Zhou X, Zhang W, Zhou X, Hu N, Zhang Y, Sun Z, Wang Z (2023) Association between host nitrogen absorption and root-associated microbial community in field-grown wheat. Appl Microbiol Biotechnol 107(23):7347–7364. https://doi.org/10.1007/s00253-023-12787-8

Article  CAS  PubMed  Google Scholar 

El-Esawi MA, Al-Ghamdi AA, Ali HM, Alayafi AA (2019) Azospirillum lipoferum FK1 confers improved salt tolerance in chickpea (Cicer arietinum L.) by modulating osmolytes, antioxidant machinery and stress-related genes expression. Environ Exp Bot 159:55–65. https://doi.org/10.1016/j.envexpbot.2018.12.001

Article  CAS  Google Scholar 

Fales F (1951) The assimilation and degradation of carbohydrates by yeast cells. J Biol Chem 193(1):113–124. https://doi.org/10.1016/S0021-9258(19)52433-4

Article  CAS  PubMed  Google Scholar 

Fan X, Zhou X, Chen H, Xie X (2021) Cross-talks between macro- and micronutrient uptake and signaling in plants. Front Plant Sci 12:663477. https://doi.org/10.3389/fpls.2021.663477

Article  PubMed  PubMed Central  Google Scholar 

Fu L, Niu B, Zhu Z, Wu S, Li W (2012) CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics 28(23):3150–3152. https://doi.org/10.1093/bioinformatics/bts565

Article  CAS  PubMed  PubMed Central  Google Scholar 

Guan Y, Hwarari D, Korboe HM, Ahmad B, Cao Y, Movahedi A, Yang L (2023) Low temperature stress-induced perception and molecular signaling pathways in plants. Environ Exp Bot 207:105190. https://doi.org/10.1016/j.envexpbot.2022.105190

Article  CAS  Google Scholar 

Gupta S, Yadav BS, Raj U, Freilich S, Varadwaj PK (2017) Transcriptomic analysis of soil grown T. aestivum cv. root to reveal the changes in expression of genes in response to multiple nutrients deficiency. Front Plant Sci 8:1025. https://doi.org/10.3389/fpls.2017.01025

Article  PubMed  PubMed Central  Google Scholar 

Gupta A, Bano A, Rai S, Mishra R, Singh M, Sharma S, Pathak N (2022) Mechanistic insights of plant-microbe interaction towards drought and salinity stress in plants for enhancing the agriculture productivity. Plant Stress 4:100073. https://doi.org/10.1016/j.stress.2022.100073

Article  CAS  Google Scholar 

Haefele SM, Nelson A, Hijmans RJ (2014) Soil quality and constraints in global rice production. Geoderma 235–236:250–259. https://doi.org/10.1016/j.geoderma.2014.07.019

Article  CAS  Google Scholar 

Hartman MD, Rojas B, Iglesias A, Figueroa C (2023) The involvement of allosteric effectors and post-translational modifications in the control of plant central carbon metabolism. Plant J 114(5):1037–1058. https://doi.org/10.1111/tpj.16215

Article  CAS  PubMed  Google Scholar 

Hasanuzzaman M, Hossain MA, Fujita M (2011) Selenium-induced up-regulation of the antioxidant defense and methylglyoxal detoxification system reduces salinity-induced damage in rapeseed seedlings. Biol Trace Elem Res 143(3):1704–1721. https://doi.org/10.1007/s12011-011-8958-4

Article  CAS  PubMed  Google Scholar 

He Y, Pantigoso HA, Wu Z, Vivanco JM (2019) Co-inoculation of Bacillus sp. and Pseudomonas putida at different development stages acts as a biostimulant to promote growth, yield and nutrient uptake of tomato. J Appl Microbiol 127:196–207. https://doi.org/10.1111/jam.14273

Article  CAS  PubMed  Google Scholar 

Imparato V, Hansen V, Santos SS, Nielsen TK, Giagnoni L, Hauggaard-Nielsen H, Johansen A, Renella G, Winding A (2016) Gasification biochar has limited effects on functional and structural diversity of soil microbial communities in a temperate agroecosystem. Soil Biol Biochem 99:128–136. https://doi.org/10.1016/j.soilbio.2016.05.004

Article  CAS  Google Scholar 

Jia XM, Zhu YF, Hu Y, Zhang R, Wang YX (2019) Integrated physiologic, proteomic, and metabolomic analyses of Malus halliana adaptation to saline–alkali stress. Hortic Res 6(1):91. https://doi.org/10.1038/s41438-019-0172-0

Article  CAS  PubMed  PubMed Central  Google Scholar 

Karnwal A, Shrivastava S, Al-Tawaha ARMS, Kumar G, Kumar A, Kumar A (2023) PGPR-mediated breakthroughs in plant stress tolerance for sustainable farming. J Plant Growth Regul. https://doi.org/10.1007/s00344-023-11013-z

Article  Google Scholar 

Kosar F, Aisha N, Sadiq M, Al-Qurainy F, Ashraf M (2019) Trehalose: a key organic osmolyte effectively involved in plant abiotic stress tolerance. J Plant Growth Regul 38:606–618. https://doi.org/10.1007/s00344-018-9876-x

Article  CAS  Google Scholar 

Li B, Xin W, Sun S, Shen Q, Xu G (2006) Physiological and molecular responses of nitrogen-starved rice plants to re-supply of different nitrogen sources. Plant Soil 287(1–2):145–159. https://doi.org/10.1007/s11104-006-9051-1

Article  CAS  Google Scholar 

Li R, Yu C, Li Y, Lam T-W, Yiu S-M, Kristiansen K, Wang J (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25(15):1966–1967. https://doi.org/10.1093/bioinformatics/btp336

Article  CAS  PubMed  Google Scholar 

Li C, Liang B, Chang C, Wei Z, Zhou S, Ma F (2016) Exogenous melatonin improved potassium content in Malus under different stress conditions. J Pineal Res 61(2):218–229. https://doi.org/10.1111/jpi.12342

Article  CAS  PubMed  Google Scholar 

Liebthal M, Maynard D, Dietz K-J (2018) Peroxiredoxins and redox signaling in plants. Antioxid Redox Signal 28(7):609–624. https://doi.org/10.1089/ars.2017.7164

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu R, Hong J, Xu X, Feng Q, Zhang D, Gu Y, Shi J, Zhao S, Liu W, Wang X, Xia H, Liu Z, Cui B, Liang P, Xi L, Jin J, Ying X, Wang X, Zhao X, Li W, Jia H, Lan Z, Li F, Wang R, Sun Y, Yang M, Shen Y, Jie Z, Li J, Chen X, Zhong H, Xie H, Zhang Y, Gu W, Deng X, Shen B, Xu X, Yang H, Xu G, Bi Y, Lai S, Wang J, Qi L, Madsen L, Wang J, Ning G, Kristiansen K, Wang W (2017) Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention. Nat Med 23(7):859–868. https://doi.org/10.1038/nm.4358

Article  CAS  PubMed  Google Scholar 

Liu Y, Li H, Li X, Zhang H, Zhu J, Peng Y, Sun G, Xu J (2023) Effect of soil bioremediation on soil microbial community structure aimed at controlling tobacco bacterial wilt. Appl Microbiol Biotechnol 107(24):7543–7555. https://doi.org/10.1007/s00253-023-12753-4

Article  CAS  PubMed  PubMed Central  Google Scholar 

Muhammad K, Aasma P, Sunny A, Zaffar M, Sajid H (2019) An overview of hazardous impacts of soil salinity in crops, tolerance mechanisms, and amelioration through selenium supplementation. Int J Mol Sci 21(1):148. https://doi.org/10.3390/ijms21010148

Article  CAS  Google Scholar 

Nguyen ML, Spaepen S, du Jardin P, Delaplace P (2018) Biostimulant effects of rhizobacteria on wheat growth and nutrient uptake depend on nitrogen application and plant development. Arch Agron Soil Sci 65:58–73. https://doi.org/10.1080/03650340.2018.1485074

Article  CAS  Google Scholar 

Nigam B, Dubey RS, Rathore D (2022) Protective role of exogenously supplied salicylic acid and PGPB (Stenotrophomonas sp.) on spinach and soybean cultivars grown under salt stress. Sci Hortic 293:110654. https://doi.org/10.1016/j.scienta.2021.110654

Article  CAS  Google Scholar 

Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, Kanehisa M (1999) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 27(1):29–34. https://doi.org/10.1093/nar/27.1.29

Article  CAS  PubMed  PubMed Central  Google Scholar 

Pozzi R, Simone M, Mazzetti C, Maffioli S, Donadio S (2011) The genus Actinoallomurus and some of its metabolites. J Antibiot 64(1):133–139. https://doi.org/10.1038/ja.2010.149

Article 

留言 (0)

沒有登入
gif