Abdulraheem MI, Xiong Y, Moshood AY, Cadenas-Pliego G, Zhang H, Hu J (2024) Mechanisms of Plant Epigenetic Regulation in response to plant stress: recent discoveries and implications. Plants 13(2):163. https://doi.org/10.3390/plants13020163

Article  CAS  PubMed  PubMed Central  Google Scholar 

Adhikari L, Baral R, Paudel D, Min D, Makaju SO, Poudel HP, Acharya JP, Missaoui AM (2022) Cold stress in plants: strategies to improve cold tolerance in forage species. Plant Stress 4:100081. https://doi.org/10.1016/j.stress.2022.100081

Article  CAS  Google Scholar 

Agrawal AA (2002) Herbivory and maternal effects: mechanisms and consequences of transgenerational induced plant resistance. Ecology 83:3408–3415

Article  Google Scholar 

Ahmad A, Dong Y, Cao X (2011) Characterization of the PRMT gene family in rice reveals conservation of arginine methylation. PLoS ONE 6:22664

Article  Google Scholar 

Ashapkin VV, Kutueva LI, Aleksandrushkina NI, Vanyushin BF (2020) Epigenetic mechanisms of plant adaptation to biotic and abiotic stresses. Int J Mol Sci 21(20):7457

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ashraf M, Akram NA (2009) Improving salinity tolerance of plants through conventional breeding and genetic engineering: an analytical comparison. Biotechnol Adv 27(6):744–752

Article  CAS  PubMed  Google Scholar 

Asim A, Gökçe ZNÖ, Bakhsh A, Çayli İT, Aksoy E, Çalişkan S, Çalişkan ME, Demirel U (2021) Individual and combined effect of drought and heat stresses in contrasting potatocultivars overexpressing miR172b-3p. Turkish J Agric Forestry 45(5):651–668

Article  CAS  Google Scholar 

Balestrini R, Chitarra W, Ghirardo A, Nardini A, Nerva L (2022) A stressful life: how plants cope with multiple biotic and abiotic adverse factors. Plant Stress 5

Bannister AJ, Kouzarides T (2011) Regulation of chromatin by histone modifications. Cell Res 3381–395. https://doi.org/10.1038/cr.2011.22

Bäurle I (2018) November. Can’t remember to forget you: chromatin-based priming of somatic stress responses. Seminars in cell & developmental biology, vol 83. Academic, pp 133–139

Bäurle I, Trindade I (2020) Chromatin regulation of somatic abiotic stress memory. J Exp Bot 71:5269–5279

Article  PubMed  Google Scholar 

Bedford MT, Clarke SG (2009) Protein arginine methylation in mammals: who, what, and why. Mol Cell 33:1–13

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bernatavichute YV, Zhang X, Cokus S et al (2008) Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS ONE 3:e3156

Article  PubMed  PubMed Central  Google Scholar 

Bernstein E, Duncan EM, Masui O et al (2006) Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin. Mol Cell Biol 26:2560–2569

Article  CAS  PubMed  PubMed Central  Google Scholar 

Berr A, McCallum EJ, Ménard R et al (2010) Arabidopsis SET DOMAIN GROUP2 is required for H3K4 trimethylation and is crucial for both sporophyte and gametophyte development. Plant Cell 22:3232–3248

Article  CAS  PubMed  PubMed Central  Google Scholar 

Bhattacharjee S, Roche B, Martienssen RA (2019) RNA-induced initiation of transcriptional silencing (RITS) complex structure and function. RNA Biol 16(9):1133–1146

Article  PubMed  PubMed Central  Google Scholar 

Bhattacharya A (2022) Effect of low-temperature stress on germination, growth, and phenology of plants: a review. Physiological Processes Plants under low Temp Stress 1–106

Boyko A, Kovalchuk I (2010) Transgenerational response to stress in Arabidopsis thaliana. Plant Signal Behav 5(8):995–998

Article  CAS  PubMed  PubMed Central  Google Scholar 

Boyko A, Blevins T, Yao Y, Golubov A, Bilichak A, Ilnytskyy Y, Hollander J, Meins F Jr, Kovalchuk I (2010) Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of dicer-like proteins. PLoS ONE 5(3):9514

Article  Google Scholar 

Brenya E, Pervin M, Chen ZH, Tissue DT, Johnson S, Braam J, Cazzonelli CI (2022) Mechanical stress acclimation in plants: linking hormones and somatic memory to thigmomorphogenesis. Plant Cell Environ 45(4):989–1010

Article  CAS  PubMed  Google Scholar 

Bruce TJ, Matthes MC, Napier JA, Pickett JA (2007) Stressful memories of plants: evidence and possible mechanisms. Plant Sci 173(6):603–608

Article  CAS  Google Scholar 

Brzezinka K, Altmann S, Czesnick H et al (2016) Arabidopsis FORGETTER1 mediates stress-induced chromatin memory through nucleosome remodeling. Elife 5. https://doi.org/10.7554/eLife.17061

Buch DU, Sharma OA, Pable AA, Barvkar VT (2020) Characterization of microRNA genes from Pigeonpea (Cajanus cajan L.) and understanding their involvement in drought stress. J Biotechnol 321:23–34

Article  CAS  PubMed  Google Scholar 

Cedar H, Bergman Y (2009) Linking DNA methylation and histone modification: patterns and paradigms. Nat Rev Genet 10:295–304

Article  CAS  PubMed  Google Scholar 

Chen X, Rechavi O (2022) Plant and animal small RNA communications between cells and organisms. Nat Rev Mol Cell Biol 23:185–203. https://doi.org/10.1038/s41580-021-00425-y

Article  CAS  PubMed  Google Scholar 

Chow HT, Mosher RA (2023) Small RNA-mediated DNA methylation during plant reproduction. Plant Cell 35:1787–1800

Article  PubMed  PubMed Central  Google Scholar 

Clapier CR, Iwasa J, Cairns BR, Peterson CL (2017) Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes. Nat Rev Mol Cell Biol 18:407–422

Article  CAS  PubMed  PubMed Central  Google Scholar 

Colaneri AC, Jones AM (2013) Genome-wide quantitative identification of DNA differentially methylated sites in Arabidopsis seedlings growing at different water potential. PLoS ONE 8(4):59878

Article  Google Scholar 

Cortijo S, Wardenaar R, Colomé-Tatché M, Gilly A, Etcheverry M, Labadie K, Caillieux E, Hospital F, Aury JM, Wincker P, Roudier F (2014) Mapping the epigenetic basis of complex traits. Science 343(6175):1145–1148

Article  CAS  PubMed  Google Scholar 

Cruz de Carvalho MH (2008) Drought stress and reactive oxygen species: production, scavenging and signaling. Plant Signal Behav 3(3):156–165

Article  PubMed  PubMed Central  Google Scholar 

Cubas P, Vincent C, Coen E (1999) An epigenetic mutation responsible for natural variation in floral symmetry. Nature 401(6749):157–161

Article  CAS  PubMed  Google Scholar 

de Oliveira Sousa AR, Ribas RF, Coelho Filho MA, Freschi L, Ferreira CF, dos Soares Filho S, Pérez-Molina W, da Silva Gesteira JP A (2022) Drought tolerance memory transmission by citrus buds. Plant Sci 320:111292. https://doi.org/10.1016/j.plantsci.2022.111292

Article  CAS  PubMed  Google Scholar 

Ding B, Bellizzi MDR, Ning Y, Meyers BC, Wang GL (2012) HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defense-related genes in rice. Plant Cell 24(9):3783–3794

Article  CAS  PubMed  PubMed Central  Google Scholar 

Divya K, Palakolanu SR, Kavi Kishor P, Rajesh AS, Vadez V, Sharma KK, Mathur PB (2021) Functional characterization of late embryogenesis abundant genes and promoters in pearl millet (Pennisetum glaucum L.) for abiotic stress tolerance. Physiol Plant 173(4):1616–1628

Article  CAS  PubMed  Google Scholar 

Dreyer A, Dietz KJ (2018) Reactive oxygen species and the redox-regulatory network in cold stress acclimation. Antioxidants 7(11):169. https://doi.org/10.3390/antiox7110169

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dumont S, Rivoal J (2019) Consequences of oxidative stress on plant glycolytic and respiratory metabolism. Front Plant Sci 10:166

Article  PubMed  PubMed Central  Google Scholar 

Ebbs ML, Bender J (2006) Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 18:1166–1176

Article  CAS  PubMed  PubMed Central  Google Scholar 

Endo M, Ishikawa Y, Osakabe K, Nakayama S, Kaya H, Araki T, Shibahara KI, Abe K, Ichikawa H, Valentine L, Hohn B (2006) Increased frequency of homologous recombination and T-DNA integration in Arabidopsis CAF‐1 mutants. EMBO J 25(23):5579–5590

Article  CAS  PubMed  PubMed Central  Google Scholar 

Farhad M, Kumar U, Tomar V, Hossain A (2023) Heat stress in wheat: a global challenge to feed billions in the current era of the changing climate. Front Sustainable Food Syst 7:1203721

Article  Google Scholar 

Feng S, Jacobsen SE, Reik W (2010) Epigenetic reprogramming in plant and animal development. Science 330:622–627

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ferdous J, Hussain SS, Shi BJ (2015) Role of micro RNA s in plant drought tolerance. Plant Biotechnol J 13(3):293–305

Article  CAS