Chromatin balances cell redox and energy homeostasis

Buttgereit F, Brand MD. A hierarchy of ATP-consuming processes in mammalian cells. Biochem J. 1995;312(Pt 1):163–7.

Article  CAS  PubMed  PubMed Central  Google Scholar 

López-Otín C, Galluzzi L, Freije JM, Madeo F, Kroemer G. Metabolic control of longevity. Cell. 2016;166(4):802–21.

Article  PubMed  Google Scholar 

Suganuma T, Workman JL. Chromatin and metabolism. Annu Rev Biochem. 2018;87:27–49.

Article  CAS  PubMed  Google Scholar 

Corrado M, Scorrano L, Campello S. Changing perspective on oncometabolites: from metabolic signature of cancer to tumorigenic and immunosuppressive agents. Oncotarget. 2016;7(29):46692–706.

Article  PubMed  PubMed Central  Google Scholar 

Vander Heiden MG, Cantley LC, Thompson CB. Understanding the Warburg effect: the metabolic requirements of cell proliferation. Science. 2009;324(5930):1029–33.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zheng J, Mutcherson R 2nd, Helfand SL. Calorie restriction delays lipid oxidative damage in Drosophila melanogaster. Aging Cell. 2005;4(4):209–16.

Article  CAS  PubMed  Google Scholar 

Mesquita A, Weinberger M, Silva A, Sampaio-Marques B, Almeida B, Leao C, et al. Caloric restriction or catalase inactivation extends yeast chronological lifespan by inducing H2O2 and superoxide dismutase activity. Proc Natl Acad Sci USA. 2010;107(34):15123–8.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Guidi F, Magherini F, Gamberi T, Borro M, Simmaco M, Modesti A. Effect of different glucose concentrations on proteome of Saccharomyces cerevisiae. Biochim Biophys Acta. 2010;1804(7):1516–25.

Article  PubMed  Google Scholar 

Suganuma T, Workman JL. Signals and combinatorial functions of histone modifications. Annu Rev Biochem. 2011;80:473–99.

Article  CAS  PubMed  Google Scholar 

Bennett NK, Nguyen MK, Darch MA, Nakaoka HJ, Cousineau D, Ten Hoeve J, et al. Defining the ATPome reveals cross-optimization of metabolic pathways. Nat Commun. 2020;11(1):4319.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Visvanathan A, Ahmed K, Even-Faitelson L, Lleres D, Bazett-Jones DP, Lamond AI. Modulation of higher order chromatin conformation in mammalian cell nuclei can be mediated by polyamines and divalent cations. PLoS ONE. 2013;8(6): e67689.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Etchegaray JP, Mostoslavsky R. Interplay between metabolism and epigenetics: a nuclear adaptation to environmental changes. Mol Cell. 2016;62(5):695–711.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kirmes I, Szczurek A, Prakash K, Charapitsa I, Heiser C, Musheev M, et al. A transient ischemic environment induces reversible compaction of chromatin. Genome Biol. 2015;16:246.

Article  PubMed  PubMed Central  Google Scholar 

Li S, Swanson SK, Gogol M, Florens L, Washburn MP, Workman JL, et al. Serine and SAM responsive complex SESAME regulates histone modification crosstalk by sensing cellular metabolism. Mol Cell. 2015;60(3):408–21.

Article  CAS  PubMed  Google Scholar 

Church MC, Price A, Li H, Workman JL. The Swi-Snf chromatin remodeling complex mediates gene repression through metabolic control. Nucleic Acids Res. 2023;51:10278–91.

Article  PubMed  PubMed Central  Google Scholar 

Ye C, Sutter BM, Wang Y, Kuang Z, Tu BP. A metabolic function for phospholipid and histone methylation. Mol Cell. 2017;66(2):180-93 e8.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Church MC, Workman JL, Suganuma T. Macrophages, metabolites, and nucleosomes: chromatin at the intersection between aging and inflammation. Int J Mol Sci. 2021;22(19):10274–85.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hnisz D, Shrinivas K, Young RA, Chakraborty AK, Sharp PA. A phase separation model for transcriptional control. Cell. 2017;169(1):13–23.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jiang S, Fagman JB, Chen C, Alberti S, Liu B. Protein phase separation and its role in tumorigenesis. Elife. 2020;9:e60264.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Banani SF, Lee HO, Hyman AA, Rosen MK. Biomolecular condensates: organizers of cellular biochemistry. Nat Rev Mol Cell Biol. 2017;18(5):285–98.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hyman AA, Weber CA, Julicher F. Liquid-liquid phase separation in biology. Annu Rev Cell Dev Biol. 2014;30:39–58.

Article  CAS  PubMed  Google Scholar 

Fernandez-Rico C, Sai T, Sicher A, Style RW, Dufresne ER. Putting the squeeze on phase separation. JACS Au. 2022;2(1):66–73.

Article  CAS  PubMed  Google Scholar 

Hansen JC, Maeshima K, Hendzel MJ. The solid and liquid states of chromatin. Epigenetics Chromatin. 2021;14(1):50.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li X, An Z, Zhang W, Li F. Phase separation: direct and indirect driving force for high-order chromatin organization. Genes. 2023;14(2):499.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Suganuma T, Swanson SK, Gogol M, Garrett TJ, Florens L, Workman JL. MOCS2 links nucleotide metabolism to nucleoli function. J Mol Cell Biol. 2022;13(11):838–40.

Article  PubMed  Google Scholar 

Gupta R, Walvekar AS, Liang S, Rashida Z, Shah P, Laxman S. A tRNA modification balances carbon and nitrogen metabolism by regulating phosphate homeostasis. Elife. 2019;8:e44795.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Laxman S, Sutter BM, Wu X, Kumar S, Guo X, Trudgian DC, et al. Sulfur amino acids regulate translational capacity and metabolic homeostasis through modulation of tRNA thiolation. Cell. 2013;154(2):416–29.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ponting CP, Oliver PL, Reik W. Evolution and functions of long noncoding RNAs. Cell. 2009;136(4):629–41.

Article  CAS  PubMed  Google Scholar 

Dutnall RN, Ramakrishnan V. Twists and turns of the nucleosome: tails without ends. Structure. 1997;5(10):1255–9.

Article  CAS  PubMed  Google Scholar 

Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ. Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature. 1997;389(6648):251–60.

Article  CAS  PubMed  Google Scholar 

Marzluff WF. Metazoan replication-dependent histone mRNAs: a distinct set of RNA polymerase II transcripts. Curr Opin Cell Biol. 2005;17(3):274–80.

Article  CAS  PubMed  Google Scholar 

Buschbeck M, Hake SB. Variants of core histones and their roles in cell fate decisions, development and cancer. Nat Rev Mol Cell Biol. 2017;18(5):299–314.

Article  CAS  PubMed  Google Scholar 

Marzluff WF, Wagner EJ, Duronio RJ. Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail. Nat Rev Genet. 2008;9(11):843–54.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mannironi C, Bonner WM, Hatch CL. H2A.X. a histone isoprotein with a conserved C-terminal sequence, is encoded by a novel mRNA with both DNA replication type and polyA 3’ processing signals. Nucleic Acids Res. 1989;17(22):9113–26.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hu Z, Chen K, Xia Z, Chavez M, Pal S, Seol JH, et al. Nucleosome loss leads to global transcriptional up-regulation and genomic instability during yeast aging. Genes Dev. 2014;28(4):396–408.

Article  CAS  PubMed 

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