Recurrent bacteremia with a hypermucoviscous Escherichia coli isolated from a patient with perihilar cholangiocarcinoma: insights from a comprehensive genome-based analysis

Jang J, Hur HG, Sadowsky MJ, Byappanahalli MN, Yan T, Ishii S. Environmental Escherichia coli: ecology and public health implications-a review. J Appl Microbiol. 2017;123(3):570–81.

CAS  PubMed  Article  Google Scholar 

Kolenda R, Burdukiewicz M, Schierack P. A systematic review and meta-analysis of the epidemiology of pathogenic Escherichia coli of calves and the role of calves as reservoirs for human pathogenic E. coli. Front Cell Infect Microbiol. 2015;5:23.

PubMed  PubMed Central  Article  CAS  Google Scholar 

Riley LW. Pandemic lineages of extraintestinal pathogenic Escherichia coli. Clin Microbiol Infect. 2014;20(5):380–90.

CAS  PubMed  Article  Google Scholar 

Johnson TJ, Wannemuehler Y, Doetkott C, Johnson SJ, Rosenberger SC, Nolan LK. Identification of minimal predictors of avian pathogenic Escherichia coli virulence for use as a rapid diagnostic tool. J Clin Microbiol. 2008;46(12):3987–96.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Luthje P, Brauner A. Virulence factors of uropathogenic E. coli and their interaction with the host. Adv Microb Physiol. 2014;65:337–72.

CAS  PubMed  Article  Google Scholar 

Wacharotayankun R, Arakawa Y, Ohta M, Tanaka K, Akashi T, Mori M, Kato N. Enhancement of extracapsular polysaccharide synthesis in Klebsiella pneumoniae by RmpA2, which shows homology to NtrC and FixJ. Infect Immun. 1993;61(8):3164–74.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Harris S, Piotrowska MJ, Goldstone RJ, Qi R, Foster G, Dobrindt U, Madec JY, Valat C, Rao FV, Smith DG. Variant O89 O-antigen of E. coli is associated with group 1 capsule loci and multidrug resistance. Front Microbiol. 2018;9:2026.

PubMed  PubMed Central  Article  Google Scholar 

Benham A, Davis J, Puzio C, Blakey G, Slobodov G. Renal abscess yields elusive hypermucoviscous phenotype of, uropathogenic Escherichia coli: a case report. J Okla State Med Assoc. 2013;106(11):435–8.

PubMed  Google Scholar 

Bottone EJ. Hypermucoviscous phenotype expressed by an isolate of uropathogenic Escherichia coli: an overlooked and underappreciated virulence factor. Clin Microbiol Newsl. 2010;32(11):81–5.

Article  Google Scholar 

Shon AS, Bajwa RP, Russo TA. Hypervirulent (hypermucoviscous) Klebsiella pneumoniae: a new and dangerous breed. Virulence. 2013;4(2):107–18.

PubMed  PubMed Central  Article  Google Scholar 

Kumabe A, Kenzaka T. String test of hypervirulent Klebsiella pneumonia. QJM. 2014;107(12):1053.

CAS  PubMed  Article  Google Scholar 

Lam MMC, Wyres KL, Duchene S, Wick RR, Judd LM, Gan YH, Hoh CH, Archuleta S, Molton JS, Kalimuddin S, Koh TH, Passet V, Brisse S, Holt KE. Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination. Nat Commun. 2018;9(1):2703.

PubMed  PubMed Central  Article  CAS  Google Scholar 

Choby JE, Howard-Anderson J, Weiss DS. Hypervirulent Klebsiella pneumoniae - clinical and molecular perspectives. J Intern Med. 2020;287(3):283–300.

CAS  PubMed  Article  Google Scholar 

Klaper K, Wendt S, Lübbert C, Lippmann N, Pfeifer Y, Werner G. Hypervirulent Klebsiella pneumoniae of Lineage ST66-K2 Caused Tonsillopharyngitis in a German Patient. Microorganisms. 2021;9(1):133.

PubMed  PubMed Central  Article  Google Scholar 

Catalan-Najera JC, Garza-Ramos U, Barrios-Camacho H. Hypervirulence and hypermucoviscosity: two different but complementary Klebsiella spp phenotypes? Virulence. 2017;8(7):1111–23.

PubMed  PubMed Central  Article  Google Scholar 

Shu C, Zha H, Long H, Wang X, Yang F, Gao J, Hu C, Zhou L, Guo B, Zhu B. C3a–C3aR signaling promotes breast cancer lung metastasis via modulating carcinoma associated fibroblasts. J Exp Clin Cancer Res. 2020;39(1):11.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Lin YT, Jeng YY, Chen TL, Fung CP. Bacteremic community-acquired pneumonia due to Klebsiella pneumoniae: clinical and microbiological characteristics in Taiwan, 2001–2008. BMC Infect Dis. 2010;10:307.

PubMed  PubMed Central  Article  CAS  Google Scholar 

Lin JC, Siu LK, Fung CP, Tsou HH, Wang JJ, Chen CT, Wang SC, Chang FY. Impaired phagocytosis of capsular serotypes K1 or K2 Klebsiella pneumoniae in type 2 diabetes mellitus patients with poor glycemic control. J Clin Endocrinol Metab. 2006;91(8):3084–7.

CAS  PubMed  Article  Google Scholar 

Blesl A, Stadlbauer V. The gut-liver axis in cholestatic liver diseases. Nutrients. 2021;13(3):1018.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Tajeddin E, Sherafat SJ, Majidi MR, Alebouyeh M, Alizadeh AH, Zali MR. Association of diverse bacterial communities in human bile samples with biliary tract disorders: a survey using culture and polymerase chain reaction-denaturing gradient gel electrophoresis methods. Eur J Clin Microbiol Infect Dis. 2016;35(8):1331–9.

CAS  PubMed  Article  Google Scholar 

Gu XX, Zhang MP, Zhao YF, Huang GM. Clinical and microbiological characteristics of patients with biliary disease. World J Gastroenterol. 2020;26(14):1638–46.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Weber A, Schneider J, Wagenpfeil S, Winkle P, Riedel J, Wantia N, Feihl S, Rommler F, Baur DM, Schmid RM, Algul H, Huber W. Spectrum of pathogens in acute cholangitis in patients with and without biliary endoprosthesis. J Infect. 2013;67(2):111–21.

PubMed  Article  Google Scholar 

Ikeda M, Kobayashi T, Fujimoto F, Okada Y, Higurashi Y, Tatsuno K, Okugawa S, Moriya K. The prevalence of the iutA and ibeA genes in Escherichia coli isolates from severe and non-severe patients with bacteremic acute biliary tract infection is significantly different. Gut Pathog. 2021;13(1):32.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Wang MC, Tseng CC, Chen CY, Wu JJ, Huang JJ. The role of bacterial virulence and host factors in patients with Escherichia coli bacteremia who have acute cholangitis or upper urinary tract infection. Clin Infect Dis. 2002;35(10):1161–6.

PubMed  Article  Google Scholar 

Søgaard KK, Veres K, Vandenbroucke-Grauls C, Vandenbroucke JP, Sørensen HT, Schønheyder HC. Community-acquired Escherichia coli bacteremia after age 50 and subsequent incidence of a cancer diagnosis: a danish population-based cohort study. Cancer Epidemiol Biomarkers Prev. 2020;29(12):2626–32.

PubMed  Article  Google Scholar 

Zhang X, Liu H. Klatskin tumor: a population-based study of incidence and survival. Med Sci Monit. 2019;25:4503–12.

PubMed  PubMed Central  Article  Google Scholar 

Dangtakot R, Intuyod K, Ahooja A, Wongwiwatchai J, Hanpanich P, Lulitanond A, Chamgramol Y, Pinlaor S, Pinlaor P. Profiling of bile microbiome identifies district microbial population between choledocholithiasis and cholangiocarcinoma patients. Asian Pac J Cancer Prev. 2021;22(1):233–40.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Neumann B, Rackwitz W, Hunfeld KP, Fuchs S, Werner G, Pfeifer Y. Genome sequences of two clinical Escherichia coli isolates harboring the novel colistin-resistance gene variants mcr-1.26 and mcr-1.27. Gut Pathog. 2020;12:40.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Barton BM, Harding GP, Zuccarelli AJ. A general method for detecting and sizing large plasmids. Anal Biochem. 1995;226(2):235–40.

CAS  PubMed  Article  Google Scholar 

Schuster CF, Weber RE, Weig M, Werner G, Pfeifer Y. Ultra-deep long-read sequencing detects IS-mediated gene duplications as a potential trigger to generate arrays of resistance genes and a mechanism to induce novel gene variants such as blaCTX-M-243. J Antimicrob Chemother. 2021. https://doi.org/10.1093/jac/dkab407.

Article  Google Scholar 

Wick RR, Judd LM, Gorrie CL, Holt KE. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol. 2017;13(6): e1005595.

PubMed  PubMed Central  Article  CAS  Google Scholar 

Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res. 2016;44(14):6614–24.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D. Updating benchtop sequencing performance comparison. Nat Biotechnol. 2013;31(4):294–6.

PubMed  Article  CAS  Google Scholar 

Bortolaia V, Kaas RS, Ruppe E, Roberts MC, Schwarz S, Cattoir V, Philippon A, Allesoe RL, Rebelo AR, Florensa AF, et al. ResFinder 4.0 for predictions of phenotypes from genotypes. J Antimicrob Chemother. 2020;75(12):3491–500.

CAS  PubMed  PubMed Central  Article  Google Scholar 

MalbergTetzschner AM, Johnson JR, Johnston BD, Lund O, Scheutz F. In silico genotyping of Escherichia coli isolates for extraintestinal virulence genes by use of whole-genome sequencing data. J Clin Microbiol. 2020. https://doi.org/10.1128/JCM.01269-20.

Article  Google Scholar 

Johansson MHK, Bortolaia V, Tansirichaiya S, Aarestrup FM, Roberts AP, Petersen TN. Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder. J Antimicrob Chemother. 2021;76(1):101–9.

CAS 

留言 (0)

沒有登入
gif