Cheng AC, Currie BJ. Melioidosis: epidemiology, pathophysiology, and management. Clin Microbiol Rev. 2005;18(2):383–416. https://doi.org/10.1128/CMR.18.2.383-416.2005.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kaestli M, Schmid M, Mayo M, Rothballer M, Harrington G, Richardson L, Hill A, Hill J, Tuanyok A, Keim P, Hartmann A, Currie BJ. Out of the ground: aerial and exotic habitats of the melioidosis bacterium Burkholderia pseudomallei in grasses in Australia. Environ Microbiol. 2012;14(8):2058–70. https://doi.org/10.1111/j.1462-2920.2011.02671.x.

Article  PubMed  Google Scholar 

Currie BJ. Melioidosis: evolving concepts in epidemiology, pathogenesis, and treatment. Semin Respir Crit Care Med. 2015;36(1):111–25. https://doi.org/10.1055/s-0034-1398389.

Article  PubMed  Google Scholar 

Wiersinga WJ, Virk HS, Torres AG, Currie BJ, Peacock SJ, Dance DAB, Limmathurotsakul D. Melioidosis Nat Rev Dis Primers. 2018;4:17107. https://doi.org/10.1038/nrdp.2017.107.

Article  PubMed  Google Scholar 

Hoffmaster AR, AuCoin D, Baccam P, Baggett HC, Baird R, Bhengsri S, Blaney DD, Brett PJ, Brooks TJ, Brown KA, et al. Melioidosis diagnostic workshop, 2013. Emerg Infect Dis. 2015;21(2):e141045. https://doi.org/10.3201/eid2102.141045.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wagner GE, Föderl-Höbenreich E, Assig K, Lipp M, Berner A, Kohler C, Lichtenegger S, Stiehler J, Karoonboonyanan W, Thanapattarapairoj N, et al. Melioidosis DS rapid test: a standardized serological dipstick assay with increased sensitivity and reliability due to multiplex detection. PLoS Negl Trop Dis. 2020;14(7):e0008452. https://doi.org/10.1371/journal.pntd.0008452.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Richardson LJ, Kaestli M, Mayo M, Bowers JR, Tuanyok A, Schupp J, Engelthaler D, Wagner DM, Keim PS, Currie BJ. Towards a rapid molecular diagnostic for melioidosis: comparison of DNA extraction methods from clinical specimens. J Microbiol Methods. 2012;88(1):179–81. https://doi.org/10.1016/j.mimet.2011.10.023.

Article  CAS  PubMed  Google Scholar 

Price EP, Dale JL, Cook JM, Sarovich DS, Seymour ML, Ginther JL, Kaufman EL, Beckstrom-Sternberg SM, Mayo M, Kaestli M, et al. Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection applications. PLoS ONE. 2012;7(5):e37723. https://doi.org/10.1371/journal.pone.0037723.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lowe W, March JK, Bunnell AJ, O’Neill KL, Robison RA. PCR-based methodologies used to detect and differentiate the Burkholderia pseudomallei complex: B. Pseudomallei, B. mallei, and B. Thailandensis. Curr Issues Mol Biol. 2014;16:23–54. https://doi.org/10.21775/cimb.016.023.

Article  PubMed  Google Scholar 

Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, Tuanyok A, Price EP, Glass MB, Leadem B, Beckstrom-Sternberg JS, et al. Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol. 2009;7:78. https://doi.org/10.1186/1741-7007-7-78.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Norris MH, et al. Burkholderia pseudomallei natural competency and DNA catabolism: identification and characterization of relevant genes from a constructed fosmid library. PLoS ONE. 2017;12(12):e0189018. https://doi.org/10.1371/journal.pone.0189018.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Choi KH, Mima T, Casart Y, Rholl D, Kumar A, Beacham IR, Schweizer HP. Genetic tools for select-agent-compliant manipulation of Burkholderia pseudomallei. Appl Environ Microbiol. 2008;74(4):1064–75. https://doi.org/10.1128/AEM.02430-07.

Article  CAS  PubMed  Google Scholar 

Holden MT, Titball RW, Peacock SJ, Cerdeño-Tárraga AM, Atkins T, Crossman LC, Pitt T, Churcher C, Mungall K, Bentley SD, et al. Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc Natl Acad Sci U S A. 2004;101(39):14240–5. https://doi.org/10.1073/pnas.0403302101.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Galyov EE, Brett PJ, DeShazer D. Molecular insights into Burkholderia pseudomallei and Burkholderia mallei pathogenesis. Annu Rev Microbiol. 2010;64:495–517. https://doi.org/10.1146/annurev.micro.112408.134030.

Article  CAS  PubMed  Google Scholar 

Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning DNA sequences. J Comput Biol. 2000;7(1–2):203–14. https://doi.org/10.1089/10665270050081478.

Article  CAS  PubMed  Google Scholar 

Trung TT, Hetzer A, Göhler A, Topfstedt E, Wuthiekanun V, Limmathurotsakul D, Peacock SJ, Steinmetz I. Highly sensitive direct detection and quantification of Burkholderia pseudomallei bacteria in environmental soil samples by using real-time PCR. Appl Environ Microbiol. 2011;77(18):6486–94. https://doi.org/10.1128/AEM.00735-11.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Rutledge RG, Côté C. Mathematics of quantitative kinetic PCR and the application of standard curves. Nucleic Acids Res. 2003;31(16):e93. https://doi.org/10.1093/nar/gng093.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Waggoner JJ, Abeynayake J, Sahoo MK, Gresh L, Tellez Y, Gonzalez K, Ballesteros G, Balmaseda A, Karunaratne K, Harris E, Pinsky BA. Development of an internally controlled real-time reverse transcriptase PCR assay for pan-dengue virus detection and comparison of four molecular dengue virus detection assays. J Clin Microbiol. 2013;51(7):2172–81. https://doi.org/10.1128/JCM.00548-13.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dong M, Fisher C, Añez G, Rios M, Nakhasi HL, Hobson JP, Beanan M, Hockman D, Grigorenko E, Duncan R. Standardized methods to generate mock (spiked) clinical specimens by spiking blood or plasma with cultured pathogens. J Appl Microbiol. 2016;120(4):1119–29. https://doi.org/10.1111/jam.13082.

Article  CAS  PubMed  PubMed Central  Google Scholar 

de Bruin A, Janse I, Koning M, de Heer L, van der Plaats RQ, van Leuken JP, van Rotterdam BJ. Detection of Coxiella burnetii DNA in the environment during and after a large Q fever epidemic in the Netherlands. J Appl Microbiol. 2013;114(5):1395–404. https://doi.org/10.1111/jam.12163.

Article  CAS  PubMed  Google Scholar 

Stoeckel DM, Stelzer EA, Dick LK. Evaluation of two spike-and-recovery controls for assessment of extraction efficiency in microbial source tracking studies. Water Res. 2009;43(19):4820–7. https://doi.org/10.1016/j.watres.2009.06.028.

Article  CAS  PubMed  Google Scholar 

Pumpuang A, Chantratita N, Wikraiphat C, Saiprom N, Day NP, Peacock SJ, Wuthiekanun V. Survival of Burkholderia pseudomallei in distilled water for 16 years. Trans R Soc Trop Med Hyg. 2011;105(10):598–600. https://doi.org/10.1016/j.trstmh.2011.06.004.

Article  PubMed  Google Scholar 

Hantrakun V, Rongkard P, Oyuchua M, Amornchai P, Lim C, Wuthiekanun V, Day NP, Peacock SJ, Limmathurotsakul D. Soil nutrient depletion is Associated with the Presence of Burkholderia pseudomallei. Appl Environ Microbiol. 2016;82(24):7086–92. https://doi.org/10.1128/AEM.02538-16.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yip TW, Hewagama S, Mayo M, Price EP, Sarovich DS, Bastian I, Baird RW, Spratt BG, Currie BJ. Endemic melioidosis in residents of desert region after atypically intense rainfall in central Australia, 2011. Emerg Infect Dis. 2015;21(6):1038–40. https://doi.org/10.3201/eid2106.141908.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Pumirat P, Saetun P, Sinchaikul S, Chen ST, Korbsrisate S, Thongboonkerd V. Altered secretome of Burkholderia pseudomallei induced by salt stress. Biochim Biophys Acta. 2009;1794(6):898–904. https://doi.org/10.1016/j.bbapap.2009.01.011.

Article  CAS  PubMed  Google Scholar 

Chantratita N, Meumann E, Thanwisai A, Limmathurotsakul D, Wuthiekanun V, Wannapasni S, Tumapa S, Day NP, Peacock SJ. Loop-mediated isothermal amplification method targeting the TTS1 gene cluster for detection of Burkholderia pseudomallei and diagnosis of melioidosis. J Clin Microbiol. 2008;46(2):568–73. https://doi.org/10.1128/JCM.01817-07.

Article  CAS  PubMed  Google Scholar 

Wong Tzeling JM, Engku Nur Syafirah EAR, Irekeola AA, Yusof W, Aminuddin Baki NN, Zueter A, Harun A, Chan YY. One-step, multiplex, dual-function oligonucleotide of loop-mediated isothermal amplification assay for the detection of pathogenic Burkholderia pseudomallei. Anal Chim Acta. 2021;1171:338682. https://doi.org/10.1016/j.aca.2021.338682.

Article  CAS  PubMed  Google Scholar 

Li J, Zhong Q, Shang MY, Li M, Jiang YS, Zou JJ, Ma SS, Huang Q, Lu WP. Preliminary Evaluation of Rapid Visual Identification of Burkholderia pseudomallei using a newly developed lateral Flow Strip-based recombinase polymerase amplification (LF-RPA) system. Front Cell Infect Microbiol. 2022;11:804737. https://doi.org/10.3389/fcimb.2021.804737.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Novak RT, Glass MB, Gee JE, Gal D, Mayo MJ, Currie BJ, Wilkins PP. Development and evaluation of a real-time PCR assay targeting the type III secretion system of Burkholderia pseudomallei. J Clin Microbiol. 2006;44(1):85–90. https://doi.org/10.1128/JCM.44.1.85-90.2006.

Article  CAS  PubMed  PubMed Central  Google Sc