Choice between DNA primer sets (A or B) of the ForenSeq kit: forensic evaluation in a Mexican admixed population sample

Gill P, Haned H, Bleka O, Hansson O, Dorum G, Egeland T (2015) Genotyping and interpretation of STR-DNA: low-template, mixtures and database matches-twenty years of research and development. Forensic Sci Int Genet 18:100–117. https://doi.org/10.1016/j.fsigen.2015.03.014

Article  CAS  PubMed  Google Scholar 

Phillips C, Devesse L, Ballard D, van-Weert L, de-la-Puente M, Melis S, Álvarez-Iglesias V, Freire-Aradas A, Oldroyd N, Holt C, Syndercombe-Court D, Carracedo Á, Lareu MV (2018) Global patterns of STR sequence variation: sequencing the CEPH human genome diversity panel for 58 forensic STRs using the Illumina ForenSeq DNA signature Prep Kit. Electrophoresis 39(21):2708–2724. https://doi.org/10.1002/elps.201800117

Article  CAS  PubMed  Google Scholar 

Casals F, Rasal R, Anglada R, Tormo M, Bonet N, Rivas N, Vásquez P, Calafell F (2022) A forensic population database in El Salvador: 58 STRs and 94 SNPs. Forensic Sci Int Genet 57. https://doi.org/10.1016/j.fsigen.2021.102646

Aguilar-Velázquez JA, Duran-Salazar M, Córdoba-Mercado MF, Coronado-Avila CE, Salas-Salas O, Martinez-Cortés G, Casals F, Calafell F, Ramos-González B, Rangel-Villalobos H (2022) Characterization of 58 STRs and 94 SNPs with the ForenSeq™ DNA signature prep kit in mexican-mestizos from the Monterrey city (Northeast, Mexico). Mol Biol Rep 49(8):7601–7609. https://doi.org/10.1007/s11033-022-07575-y

Article  CAS  PubMed  Google Scholar 

Guevara EK, Palo JU, King JL, Buś MM, Guillén S, Budowle B, Sajantila A (2021) Autosomal STR and SNP characterization of populations from the Northeastern Peruvian Andes with the ForenSeqTM; DNA signature Prep Kit. Forensic Sci Int Genet 52. https://doi.org/10.1016/j.fsigen.2021.102487

Peng D, Zhang Y, Ren H, Li H, Li R, Shen X, Wang N, Huang E, Wu R, Sun H (2020) Identification of sequence polymorphisms at 58 STRs and 94 iiSNPs in a tibetan population using massively parallel sequencing. Sci Rep 10. https://doi.org/10.1038/s41598-020-69137-1

Delest A, Godfrin D, Chantrel Y, Ulus A, Vannier J, Faivre M, Hollard C, Laurent F-X (2020) Sequenced-based French population data from 169 unrelated individuals with Verogen’s ForenSeq DNA signature prep kit. Forensic Sci Int Genet. 47. https://doi.org/10.1016/j.fsigen.2020.102304

Hussing C, Bytyci R, Huber C, Morling N, Børsting C (2019) The Danish STR sequence database: duplicate typing of 363 danes with the ForenSeq™ DNA signature Prep Kit. Int J Legal Med 133(2):325–334. https://doi.org/10.1007/s00414-018-1854-0

Article  CAS  PubMed  Google Scholar 

Salvo NM, Janssen K, Kirsebom MK, Meyer OS, Berg T, Olsen GH (2022) Predicting eye and hair colour in a Norwegian population using Verogen’s ForenSeq™ DNA signature prep kit. Forensic Sci Int Genet 56:102620. https://doi.org/10.1016/j.fsigen.2021.102620

Article  CAS  PubMed  Google Scholar 

Stephens KM, Barta R, Fleming K, Perez JC, Wu SF, Snedecor J, Holt CL, LaRue B, Budowle B (2023) Developmental validation of the ForenSeq MainstAY kit, MiSeq FGx sequencing system and ForenSeq Universal Analysis Software. Forensic Sci Int Genet 64:102851. https://doi.org/10.1016/j.fsigen.2023.102851

Article  CAS  PubMed  Google Scholar 

Elkins KM, Garloff AT, Zeller CB (2023) Additional predictions for forensic DNA phenotyping of externally visible characteristics using the ForenSeq and Imagen kits. J Forensic Sci 68(2):608–613. https://doi.org/10.1111/1556-4029.15215

Article  CAS  PubMed  Google Scholar 

Gutierrez R, Roman MG, Harrel M, Hughes S, LaRue B, Houston R (2022) Assessment of the ForenSeq mtDNA control region kit and comparison of orthogonal technologies. Forensic Sci Int Genet 59:102721. https://doi.org/10.1016/j.fsigen.2022.102721

Article  CAS  PubMed  Google Scholar 

Verogene (2020) ForenSeq™ DNA signature Prep Reference Guide. D2018005 Rev. C. California 92121 U.S.A, San Diego

Google Scholar 

Parson W, Ballard D, Budowle B, Butler JM, Gettings KB, Gill P, Gusmão L, Hares DR, Irwin JA, King JL, Knijff Pd, Morling N, Prinz M, Schneider PM, Neste CV, Willuweit S, Phillips C (2016) Massively parallel sequencing of forensic STRs: considerations of the DNA commission of the International Society for Forensic Genetics (ISFG) on minimal nomenclature requirements. Forensic Sci Int Genet 22:54–63. https://doi.org/10.1016/j.fsigen.2016.01.009

Article  CAS  PubMed  Google Scholar 

Aguilar-Velázquez JA, Llamas-de-Dios BJ, Córdova-Mercado MF, Coronado-Ávila CE, Salas-Salas O, López-Quintero A, Ramos-González B, Rangel-Villalobos H (2023) Accuracy of Eye and Hair Color Prediction in Mexican Mestizos from Monterrey City based on ForenSeq(TM) DNA signature Prep. Genes 14(5). https://doi.org/10.3390/genes14051120

Verogen (2018) MiSeq FGx™ Instrument Reference Guide. CA 92121, USA, San Diego

Google Scholar 

Casals F, Anglada R, Bonet N, Rasal R, van-der-Gaag K, Hoogenboom J, Solé-Morata J, Comas N, Calafell D F (2017) Length and repeat-sequence variation in 58 STRs and 94 SNPs in two Spanish populations. Forensic Sci International: Genet 30:66–70. https://doi.org/10.1016/j.fsigen.2017.06.006

Article  CAS  Google Scholar 

Lewis PO, Zaykin D (2001) Genetic Data Analysis (GDA): Computer program for the analysis of allelic data version 1.1

Peakall R, Smouse PE (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics 28:2537–2539

Article  CAS  PubMed  PubMed Central  Google Scholar 

Walsh S, Chaitanya L, Clarisse L, Wirken L, Draus-Barini J, Kovatsi L, Maeda H, Ishikawa T, Sijen T, de Knijff P, Branicki W, Liu F, Kayser M (2014) Developmental validation of the HIrisPlex system: DNA-based eye and hair colour prediction for forensic and anthropological usage. Forensic Sci Int Genet 9:150–161 Epub 2013 Dec 27. PMID: 24528593

Article  CAS  PubMed  Google Scholar 

Gusmão L, Butler JM, Linacre A, Parson W, Roewer L, Schneider PM, Carracedo A (2017) Revised guidelines for the publication of genetic population data. Forensic Sci Int Genet 30:160–163. https://doi.org/10.1016/j.fsigen.2017.06.007

Article  CAS  PubMed  Google Scholar 

Watahiki H, Fujii K, Fukagawa T, Mita Y, Kitayama T, Mizuno N (2020) Differences in DYF387S1 copy number distribution among haplogroups caused by haplogroup-specific ancestral Y-chromosome mutations. Forensic Sci Int Genet 48:102315. https://doi.org/10.1016/j.fsigen.2020.102315

Article  CAS  PubMed  Google Scholar 

Kumar A, Kumar R, Kumawat G, Dixit A, Kaushik R, Rani-Singh V (2022) Rare Finding of a triallelic pattern at the DYF387S1 locus in the Population of Rajasthan, India. Medico-legal Update 22(2):12–17. https://doi.org/10.37506/mlu.v22i2

Article  Google Scholar 

Picanço JB, Raimann PE, Paskulin GA, Alvarez L, Amorim A, Batista Dos Santos SE, Alho CS (2014) Tri-allelic pattern at the TPOX locus: a familial study. Gene 535(2):353–358. https://doi.org/10.1016/j.gene.2013.10.019

Article  CAS  PubMed  Google Scholar 

Zhang S, Bian Y, Zhang Z, Zheng H, Wang Z, Zha L, Cai J, Gao Y, Ji C, Hou Y, Li C (2015) Parallel analysis of 124 universal SNPs for human identification by targeted semiconductor sequencing. Sci Rep Dec 22:5:18683. https://doi.org/10.1038/srep18683

Article  CAS  Google Scholar 

Davenport L, Devesse L, Syndercombe Court D, Ballard D (2023) Forensic identity SNPs: Characterisation of flanking region variation using massivelly parallel sequencing. Forensic Sci Int Genet 64:102847. https://doi.org/10.1016/j.fsigen.2023.102847

Article  CAS  PubMed  Google Scholar 

Adhikari K, Mendoza-Revilla J, Sohail A, Fuentes-Guajardo M, Lampert J, Chacón-Duque JC, Hurtado M, Villegas V, Granja V, Acuña-Alonzo V, Jaramillo C, Arias W, Lozano RB, Everardo P, Gómez-Valdés J, Villamil-Ramírez H, Silva de Cerqueira CC, Hunemeier T, Ramallo V, Schuler-Faccini L, Salzano FM, Gonzalez-José R, Bortolini MC, Canizales-Quinteros S, Gallo C, Poletti G, Bedoya G, Rothhammer F, Tobin DJ, Fumagalli M, Balding D, Ruiz-Linares A (2019) A GWAS in Latin americans highlights the convergent evolution of lighter skin pigmentation in Eurasia. Nat Commun 21(101):358. https://doi.org/10.1038/s41467-018-08147-0

Article  CAS  Google Scholar 

Suarez P, Baumer K, Hall D Further insight into the global variability of the OCA2-HERC2 locus for human pigmentation from multiallelic markers (2021). Sci Rep. 18;11(1):22530. https://doi.org/10.1038/s41598-021-01940-w

Rubi-Castellanos R, Martínez-Cortés G, Muñoz-Valle JF, González-Martín A, Cerda-Flores RM, Anaya-Palafox M, Rangel-Villalobos H (2009) Pre-hispanic mesoamerican demography approximates the present-day ancestry of Mestizos throughout the territory of Mexico. Am J Phys Anthropol 139(3):284–294. https://doi.org/10.1002/ajpa.20980

Article  PubMed  Google Scholar 

Moreno-Estrada A, Gignoux CR, Fernández-López JC, Zakharia F, Sikora M, Contreras AV, Acuña-Alonzo V, Sandoval K, Eng C, Romero-Hidalgo S, Ortiz-Tello P, Robles V, Kenny EE, Nuño-Arana I, Barquera-Lozano R, Macín-Pérez G, Granados-Arriola J, Huntsman S, Galanter JM, Via M, Ford JG, Chapela R, Rodriguez-Cintron W, Rodríguez-Santana JR, Romieu I, Sienra-Monge JJ, del Navarro R, London B, Ruiz-Linares SJ, Garcia-Herrera A, Estrada R, Hidalgo-Miranda K, Jimenez-Sanchez A, Carnevale G, Soberón A, Canizales-Quinteros X, Rangel-Villalobos S, Silva-Zolezzi H, Burchard I, Bustamante EG CD (2014) The genetics of Mexico recapitulates native American substructure and affects biomedical traits. Science 13(6189):1280–1285. https://doi.org/10.1126/science.1251688

Article  CAS  Google Scholar 

Aguilar-Velázquez JA, Martínez-Cortés G, Inclán-Sánchez A, Favela-Mendoza AF, Velarde-Félix JS, Rangel-Villalobos H (2018) Forensic parameters and admixture in Mestizos from five geographic regions of Mexico based on 20 autosomal STRs (Powerplex 21 system). Int J Legal Med 132(5):1293–1296. https://doi.org/10.1007/s00414-018-1810-z

Article  PubMed  Google Scholar 

Sohail M, Palma-Martínez MJ, Chong AY, Quinto-Cortés CD, Barberena-Jonas C, Medina-Muñoz SG, Ragsdale A, Delgado-Sánchez G, Cruz-Hervert LP, Ferreyra-Reyes L, Ferreira-Guerrero E, Mongua-Rodríguez N, Canizales-Quintero S, Jimenez-Kaufmann A, Moreno-Macías H, Aguilar-Salinas CA, Auckland K, Cortés A, Acuña-Alonzo V, Gignoux CR, Wojcik GL, Ioannidis AG, Fernández-Valverde SL, Hill AVS, Tusié-Luna MT, Mentzer AJ, Novembre J, García-García L (2023) Moreno-Estrada A. Mexican Biobank advances population and medical genomics of diverse ancestries. Nature 622(7984):775–783. https://doi.org/10.1038/s41586-023-06560-0

Article  CAS  PubMed  PubMed Central 

留言 (0)

沒有登入
gif