Abdelrahman M, Wei Z, Rohila JS, Zhao K. Multiplex genome-editing technologies for revolutionizing plant biology and crop improvement. Front Plant Sci. 2021;12:721203. https://doi.org/10.3389/fpls.2021.721203.
Article PubMed PubMed Central Google Scholar
Abudayyeh OO, Gootenberg JS, Essletzbichler P, Han S, Joung J, Belanto JJ, et al. RNA targeting with CRISPR-Cas13. Nat. 2017;550:280–4. https://doi.org/10.1038/nature24049.
Afzal S, Sirohi P, Singh NK. A review of CRISPR associated genome engineering: application, advances and future prospects of genome targeting tool for crop improvement. Biotechnol Lett. 2020;42:1611–32. https://doi.org/10.1007/s10529-020-02950-w.
Article CAS PubMed Google Scholar
Ali Z, Abulfaraj A, Idris A, Ali S, Tashkandi M, Mahfouz MM. CRISPR/Cas9-mediated viral interference in plants. Genome Biol. 2015;16:238. https://doi.org/10.1186/s13059-015-0799-6.
Article CAS PubMed PubMed Central Google Scholar
Ali Z, Ali S, Tashkandi M, Zaidi SS, Mahfouz M. CRISPR/Cas9-mediated immunity to geminiviruses: differential interference and evasion. Sci Rep. 2016;6:26912. https://doi.org/10.1038/srep26912.
Article CAS PubMed PubMed Central Google Scholar
Ali Z, Eid A, Ali S, Mahfouz MM. Pea early-browning virus-mediated genome editing via the CRISPR/Cas9 system in Nicotiana benthamiana and Arabidopsis. Virus Res. 2018;244:333–7. https://doi.org/10.1016/j.virusres.2017.10.009.
Article CAS PubMed Google Scholar
Ali Z, Mahfouz MM. CRISPR/Cas systems versus plant viruses: engineering plant immunity. Plant Physiol. 2021;186(4):1170–85. https://doi.org/10.1093/plphys/kiab220.
Alkhnbashi OS, Mitrofanov A, Bonidia R, Raden M, Tran VD, Eggenhofer F, Shah SA, Öztürk E, Padilha VA, Sanches DS, de Carvalho ACPLF, Backofenand R. CRISPR loci: comprehensive and accurate annotation of CRISPR–Cas systems. Nucl Acid Res. 2021;49:W125–30.
Alok A, Sandhya D, Jogam P, Rodrigues V, Bhati KK, Sharma H, Kumar J. The rise of the CRISPR/Cpf1 system for efficient genome editing in plants. Front Plant Sci. 2020;11:264. https://doi.org/10.3389/fpls.2020.00264.
Article PubMed PubMed Central Google Scholar
Aman R, Mahas A, Butt H, Aljedaani F, Mahfouz M. Engineering RNA virus interference via the CRISPR/Cas13 machinery in Arabidopsis. Viruses. 2018;10:732. https://doi.org/10.1111/pbi.12881.
Article CAS PubMed PubMed Central Google Scholar
Asmamaw M, Zawdie B. Mechanism and applications of CRISPR/Cas-9-mediated genome editing. Biologic. 2021;15:353–61. https://doi.org/10.2147/BTT.S326422.
Atarashi H, Jayasinghe WH, Kwon J, Kim H, Taninaka Y, Igarashi M, Ito K, Yamada T, Masuta C, Nakahara KS. Artificially edited alleles of the eukaryotic translation initiation factor 4e1 gene differentially reduce susceptibility to cucumber mosaic virus and potato virus Y in tomato. Front Microbiol. 2020;11:564310. https://doi.org/10.3389/fmicb.2020.564310.
Article PubMed PubMed Central Google Scholar
Atkinson NJ, Urwin PE. The interaction of plant biotic and abiotic stresses: from genes to the field. J Exp Bot. 2012;63(10):3523–43. https://doi.org/10.1093/jexpb/ers100.
Article CAS PubMed Google Scholar
Awan MJA, Akram A, Amin I, Mansoor S. Viral vectors as carriers of genome-editing reagents. Trends Plant Sci. 2023;28(9):981–3. https://doi.org/10.1016/j.tplants.2023.05.010.
Article CAS PubMed Google Scholar
Bandyopadhyay A, Kancharla N, Javalkote VS, Dasgupta S, Brutnell TP. CRISPR-Cas12a (Cpf1): a versatile tool in the plant genome editing tool box for agricultural advancement. Front Plant Sci. 2020;11:584151. https://doi.org/10.3389/fpls.2020.584151.
Article PubMed PubMed Central Google Scholar
Bhattacharya S, Satpati P. Insights into the mechanism of CRISPR/cas9-based genome editing from molecular dynamics simulations. ACS Omega. 2023;8:1817–37. https://doi.org/10.1021/acsomega.2c05583.
Article CAS PubMed Google Scholar
Canto T, Aranda MA, Fereres A. Climate change effects on physiology and population processes of hosts and vectors that influence the spread of hemipteran-borne plant viruses. Global Chang Biol. 2009;15:1884–94. https://doi.org/10.1111/j.1365-2486.2008.01820.x.
Cao X, Xie H, Song M, Lu J, Ma P, Huang B, Wang M, Tian Y, Chen F, Peng J, Lang Z, Li G, Zhu JK. Cut-dip-budding delivery system enables genetic modifications in plants without tissue culture. Innov (Camb). 2023;4:100345. https://doi.org/10.1016/j.xinn.2022.100345.
Chaitanya KV. Structure and organization of virus genomes. Genome Genom. 2019;18:1–30.
Chandrasekaran J, Brumin M, Wolf D, Leibman D, Klap C, Pearlsman M, Sherman A, Arazi T, Gal-On A. Development of broad virus resistance in non-transgenic cucumber using CRISPR/Cas9 technology. Mol Plant Pathol. 2016;17:1140–53. https://doi.org/10.1111/mpp.12375.
Article CAS PubMed PubMed Central Google Scholar
Chaudhary J, Alisha A, Bhatt V, Chandanshive S, Kumar N, Mir Z, Kumar A, Yadav SK, Shivaraj SM, Sonah H, Deshmukh R. Mutation breeding in tomato: advances, applicability and challenges. Plant. 2019;8:128. https://doi.org/10.3390/plants8050128.
Chaudhuri A, Halder K, Datta A. Classification of CRISPR/Cas system and its application in tomato breeding. Theor Appl Genet. 2022;135:367–87. https://doi.org/10.1007/s00122-021-03984-y.
Article CAS PubMed PubMed Central Google Scholar
Chylinski K, Le Rhun A, Charpentier E. The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems. RNA Biol. 2013;10:726–37. https://doi.org/10.4161/ma.24321.
Article CAS PubMed PubMed Central Google Scholar
Csorba T, Kontra L, Burgyán J. Viral silencing suppressors: tools forged to fine-tune host-pathogen coexistence. Virol. 2015;479:85–103. https://doi.org/10.1016/j.virol.2015.02.028.
Demirer GS, Zhang H, Goh NS, Gonzalez-Grandio E, Landry MP. Carbon nanotube-mediated DNA delivery without transgene integration in intact plants. Nat Protoc. 2019;14:2954–71. https://doi.org/10.1038/s41596-019-0208-9.
Article CAS PubMed PubMed Central Google Scholar
Dodds P, Rathjen J. Plant immunity: towards an integrated view of plant–pathogen interactions. Nat Rev Genet. 2010;11:539–48. https://doi.org/10.1038/nrg2812.
Article CAS PubMed Google Scholar
Ellison EE, Nagalakshmi U, Gamo ME, Huang PJ, Dinesh-Kumar S, Voytas DF. Multiplexed heritable gene editing using RNA viruses and mobile single guide RNAs. Nat Plant. 2020;6:620–4. https://doi.org/10.1038/s41477-020-0670-y.
Faure G, Shmakov SA, Makarova KS, Wolf YI, Crawley AB, Barrangou R, Koonin EV. Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems. RNA Biol. 2019;16:435–48. https://doi.org/10.1080/15476286.2018.1493331.
Fiallo-Olivé E, Lett JM, Martin DP, Roumagnac P, Varsani A, Zerbini FM, Navas-Castillo J. Ictv report consortium. ICTV virus taxonomy profile: Geminiviridae. J Gen Virol. 2021;102(21):001696.
PubMed PubMed Central Google Scholar
Fidan H, Calis O, Ari E, Atasay
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