The discovery of multiple active mys-related LTR-retroelements within the Neotominae subfamily of cricetid rodents

Beck CR, Garcia-Perez JL, Badge RM, Moran JV (2011) LINE-1 elements in structural variation and disease. Annu Rev Genomics Hum Genet 12:187–215. https://doi.org/10.1146/annurev-genom-082509-141802

Article  CAS  PubMed  PubMed Central  Google Scholar 

Böhne A, Brunet F, Galiana-Arnoux D, Schultheis C, Volff JN (2008) Transposable elements as drivers of genomic and biological diversity in vertebrates. Chrom Res 16:203–215. https://doi.org/10.1007/s10577-007-1202-6

Brouha B, Schustak J, Badge RM et al (2003) Hot L1s account for the bulk of retrotransposition in the human population. Proc Natl Acad Sci U S A 100:5280–5285. https://doi.org/10.1073/pnas.0831042100

Article  CAS  PubMed  PubMed Central  Google Scholar 

Carleton MD (1989) Systematics and Evolution. In: Kirkland GL, Layne JN (eds) Advances in the Study of Peromyscus (Rodentia). Texas Tech University Press, Lubbock, pp 7–142

Google Scholar 

Deininger PL, Batzer MA, Hutchison CA, Edgell MH (1992) Master genes in mammalian repetitive DNA amplification. Trends Genet 8:307–311. https://doi.org/10.1016/0168-9525(92)90262-3

Article  CAS  PubMed  Google Scholar 

Denner J (2021) The origin of porcine endogenous retroviruses (PERVs). Arch Virol 166:1007–1013. https://doi.org/10.1007/s00705-020-04925-8

Article  CAS  PubMed  Google Scholar 

Dewannieux M, Heidmann T (2005) L1-mediated retrotransposition of murine B1 and B2 SINEs recapitulated in cultured cells. J Mol Biol 349:241–247. https://doi.org/10.1016/j.jmb.2005.03.068

Article  CAS  PubMed  Google Scholar 

Ding W, Lin L, Chen B, Dai J (2006) L1 elements, processed pseudogenes and retrogenes in mammalian genomes. IUBMB Life 58:677–685. https://doi.org/10.1080/15216540601034856

Article  CAS  PubMed  Google Scholar 

Feschotte C, Gilbert C (2012) Endogenous viruses: insights into viral evolution and impact on host biology. Nat Rev Genet 13:283–296. https://doi.org/10.1038/nrg3199

Article  CAS  PubMed  Google Scholar 

Garcia-Perez JL, Doucet AJ, Bucheton A et al (2007) Distinct mechanisms for trans-mediated mobilization of cellular RNAs by the LINE-1 reverse transcriptase. Genome Res 17:602–611. https://doi.org/10.1101/gr.5870107

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gifford RJ, Blomberg J, Coffin JM et al (2018) Nomenclature for endogenous retrovirus (ERV) loci. Retrovirology 15:59. https://doi.org/10.1186/s12977-018-0442-1

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hayward A (2017) Origin of the retroviruses: when, where, and how? Curr Opin Virol 25:23–27. https://doi.org/10.1016/j.coviro.2017.06.006

Article  CAS  PubMed  PubMed Central  Google Scholar 

Holloway JR, Williams ZH, Freeman MM et al (2019) Gorillas have been infected with the HERV-K (HML-2) endogenous retrovirus much more recently than humans and chimpanzees. Proc Natl Acad Sci U S A 116:1337–1346. https://doi.org/10.1073/pnas.1814203116

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jachowicz JW, Torres-Padilla ME (2016) LINEs in mice: features, families, and potential roles in early development. Chromosoma 125:29–39. https://doi.org/10.1007/s00412-015-0520-2

Article  CAS  PubMed  Google Scholar 

Janecek LL, Longmire JL, Wichman HA, Baker RJ (1993) Genome organization of repetitive elements in the rodent, Peromyscus leucopus. Mamm Genome 4:374–381. https://doi.org/10.1007/BF00360588

Article  CAS  PubMed  Google Scholar 

Jansa SA, Giarla TC, Lim BK (2009) The phylogenetic position of the rodent genus Typhlomys and the geographic origin of Muroidea. J Mammal 90:1083–1094. https://doi.org/10.1644/08-MAMM-A-318.1

Article  Google Scholar 

Jurka J (2000) Repbase update: a database and an electronic journal of repetitive elements. Trends Genet 16:418–420. https://doi.org/10.1016/s0168-9525(00)02093-x

Article  CAS  PubMed  Google Scholar 

Kass H (2001) Impact of SINEs and LINEs on the mammalian genome. Curr Genomics CG 2:199–219. https://doi.org/10.2174/1389202013350968

Article  CAS  Google Scholar 

Kass DH, Jamison N (2007) Identification of an active ID-like group of SINEs in the mouse. Genomics 90:416–420. https://doi.org/10.1016/j.ygeno.2007.05.007

Article  CAS  PubMed  Google Scholar 

Kass DH, Kim J, Deininger PL (1996) Sporadic amplification of ID elements in rodents. J Mol Evol 42:7–14. https://doi.org/10.1007/BF00163205

Article  CAS  PubMed  Google Scholar 

Kass DH, Kim J, Rao A, Deininger PL (1997) Evolution of B2 repeats: the muroid explosion. Genetica 99:1–13. https://doi.org/10.1007/BF02259494

Article  CAS  PubMed  Google Scholar 

Kass DH, Raynor ME, Williams TM (2000) Evolutionary history of B1 retroposons in the genus Mus. J Mol Evol 51:256–264. https://doi.org/10.1007/s002390010087

Article  CAS  PubMed  Google Scholar 

Kijima TE, Innan H (2010) On the estimation of the insertion time of LTR retrotransposable elements. Mol Biol Evol 27:896–904. https://doi.org/10.1093/molbev/msp295

Article  CAS  PubMed  Google Scholar 

Kohany O, Gentles AJ, Hankus L, Jurka J (2006) Annotation, submission and screening of repetitive elements in repbase: repbase submitter and censor. BMC Bioinformatics 7:474. https://doi.org/10.1186/1471-2105-7-474

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lander ES, Linton LM, Birren B et al (2001) Initial sequencing and analysis of the human genome. Nature 409:860–921. https://doi.org/10.1038/35057062

Article  CAS  PubMed  Google Scholar 

Lee RN, Jaskula JC, van den Bussche RA et al (1996) Retrotransposon Mys was active during evolution of the Peromyscus leucopus-maniculatus complex. J Mol Evol 42:44–51. https://doi.org/10.1007/BF00163210

Article  CAS  PubMed  Google Scholar 

Leite RN, Kolokotronis S-O, Almeida FC et al (2014) In the wake of invasion: tracing the historical biogeography of the South American Cricetid Radiation (Rodentia, Sigmodontinae). PLoS ONE 9:e100687. https://doi.org/10.1371/journal.pone.0100687

Article  CAS  PubMed  PubMed Central  Google Scholar 

Luqman-Fatah A, Miyoshi T (2022) Human LINE-1 retrotransposons: impacts on the genome and regulation by host factors. Genes Genet Syst Eprint. https://doi.org/10.1266/ggs.22-00038

Article  Google Scholar 

Mouse Genome Sequencing Consortium, Waterston RH, Lindblad-Toh K et al (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420:520–562. https://doi.org/10.1038/nature01262

Article  CAS  Google Scholar 

Neitzel H, Kalscheuer V, Singh AP et al (2002) Copy and paste: the impact of a new non-L1 retroposon on the gonosomal heterochromatin of Microtus agrestis. Cytogenet Genome Res 96:179–185. https://doi.org/10.1159/000063036

Article  CAS  PubMed  Google Scholar 

Platt RN, Amman BR, Keith MS, Thompson CW, Bradley RD (2015) What is Peromyscus? Evidence from nuclear and mitochondrial DNA sequences suggests the need for a new classification. J Mammal 96:708–719. https://doi.org/10.1093/jmammal/gyv067

Article  PubMed  PubMed Central  Google Scholar 

Platt RN, Vandewege MW, Ray DA (2018) Mammalian transposable elements and their impacts on genome evolution. Chromosome Res 26:25–43. https://doi.org/10.1007/s10577-017-9570-z

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ribet D, Dewannieux M, Heidmann T (2004) An active murine transposon family pair: retrotransposition of “master” MusD copies and ETn trans-mobilization. Genome Res 14:2261–2267. https://doi.org/10.1101/gr.2924904

Article  CAS  PubMed  PubMed Central  Google Scholar 

Richardson SR, Doucet AJ, Kopera HC et al (2015) The influence of LINE-1 and SINE retrotransposons on mammalian genomes. Microbiol Spectr. https://doi.org/10.1128/microbiolspec.MDNA3-0061-2014

Article  PubMed  Google Scholar 

Rinehart TA, Grahn RA, Wichman HA (2005) SINE extinction preceded LINE extinction in sigmodontine rodents: implications for retrotranspositional dynamics and mechanisms. Cytogenet Genome Res 110:416–425. https://doi.org/10.1159/000084974

Article  CAS  PubMed  Google Scholar 

Roy AM, Gong C, Kass DH, Deininger PL (1998) Recent B2 element insertions in the mouse genome. DNA Seq 8:343–348. https://doi.org/10.3109/10425179809034078

Article  CAS  PubMed  Google Scholar 

Sawby R, Wichman HA (1997) Analysis of orthologous retrovirus-like elements in the white-footed mouse, Peromyscus leucopus. J Mol Evol 44:74–80. https://doi.org/10.1007/pl00006123

Article  CAS  PubMed  Google Scholar 

Smith MF, Patton JL (1999) Phylogenetic relationships and the radiation of sigmodontine rodents in South America: evidence from cytochrome b. J Mamm Evol 6:89–128. https://doi.org/10.1023/A:1020668004578

Article 

留言 (0)

沒有登入
gif