Forecasting effects of climate changes on the population genetic structure of Anacardium occidentale in the Cerrado biome, Brazil

Ballesteros-Mejia L, Lima JS, Collevatti RG (2018) Spatially-explicit analyses reveal the distribution of genetic diversity and plant conservation status in Cerrado biome. Biodiv Conserv 29:1537–1554. https://doi.org/10.1007/s10531-018-1588-9

Article  Google Scholar 

Balogoun I, Ahoton EL, Aliou S, Daouda OB, Vincent E, Guillaume LA, Bonaventure CA, Sévérin B, Chougourou DC, Ahanchede A (2016) Effect of climatic factors on cashew (Anacardium occidentale L.) productivity in Benin (West Africa). J Earth Sci Clim Change 7:329

Google Scholar 

Barbosa AC, Collevatti RG, Chaves LJ, Guedes LBS, Diniz-Filho JAF, Telles MPC (2015) Range-wide genetic differentiation of Eugenia dysenterica (Myrtaceae) populations in Brazilian Cerrado. Bioch Syst Ecol 59:288–296

Article  CAS  Google Scholar 

Barros MJF, Silva-Arias GA, Fregonezi JN, Turchetto-Zolet AC, Ignanci JRV, Diniz-Filho JAF, Freitas LB (2015) Environmental drivers of diversity in subtropical highland Grasslands. Perspect Plant Ecol Evol Syst 17:360–368

Article  Google Scholar 

Bilton MC, Metz J, Tielbörger K (2016) Climatic niche groups: A novel application of a common assumption predicting plant community response to climate change. Perspect Plant Ecol Evol Syst 19:61–69. https://doi.org/10.1016/jppees201602006

Article  Google Scholar 

Braga RS, Pinto RB, Chaves LJ, Diniz-Filho JAF, Soares TN, Collevatti RG, Telles MPC (2019) Hierarchical genetic and spatial structure among varieties and populations of Hymenaea stigonocarpa (Fabaceae) in Brazilian savannah. Tree Genet Genom 15:84. https://doi.org/10.1007/s11295-019-1398-6

Article  Google Scholar 

Bush A, Mokany K, Catullo R et al (2016) Incorporating evolutionary adaptation in species distribution modelling reduces projected vulnerability to climate change. Ecol Lett 19:1468–1478

Article  PubMed  Google Scholar 

Collevatti RG, Terribile LC, Lima-Ribeiro MS, Nabout JC, de Oliveira G, Rangel TF, Rabelo SG, Diniz-Filho JAF (2012) A coupled phylogeographical and species distribution modelling approach recovers the demographical history of a Neotropical seasonally dry forest tree species. Mol Ecol 21:5845–5863. https://doi.org/10.1111/mec12071

Article  PubMed  Google Scholar 

Collevatti RG, Telles MPC, Nabout JC, Chaves LJ, Soares TN (2013) Demographic history and the low genetic diversity in Dipteryx alata (Fabaceae) from Brazilian Neotropical savannas. Heredity 111:97–105. https://doi.org/10.1038/hdy201323

Article  CAS  PubMed  PubMed Central  Google Scholar 

Collevatti RG, Lima-Ribeiro MS, Terribile LC, Guedes LBS, Rosa FF, Telles MPC (2014) Recovering species demographic history from multi-model inference: the case of a Neotropical savanna tree species. BMC Evol Biol 14:213. https://doi.org/10.1186/s12862-014-0213-0

Article  PubMed  PubMed Central  Google Scholar 

Collevatti RG, Rodrigues EE, Vitorino LC, Lima-Ribeiro MS, Chaves LJ, Telles MPC (2018) Unravelling the genetic differentiation among varieties of the Neotropical savanna tree Hancornia speciosa Gomes. Annals Bot 122:973–984. https://doi.org/10.1093/aob/mcy060

Article  Google Scholar 

Cota LG, Moreira PA, Brandão MM, Royo VA, Junior AFM, Menezes EV, Oliveira DA (2017) Structure and genetic diversity of Anacardium humile (Anacardiaceae): a tropical shrub. Genet Mol Res 16:gmr16039778. https://doi.org/10.4238/gmr16039778

Article  Google Scholar 

Cotto O, Wessely J, Georges D et al (2017) A dynamic eco-evolutionary model predicts slow response of alpine plants to climate warming. Nat Commun 8:15399

Article  CAS  PubMed  PubMed Central  Google Scholar 

Croxford AE, Robson M, Wilkinson MJ (2006) Characterization and PCR multiplexing of polymorphic microsatellite loci in cashew (Anacardium occidentale L.) and their cross-species utilization. Mol Ecol Notes 6:249–251. https://doi.org/10.1111/j1471-8286200501208x

Article  CAS  Google Scholar 

Diniz-Filho JAF, Melo DB, de Oliveira G, Collevatti RG, Soares TN, Nabout JC, Lima JS, Dobrovolski R, Chaves LJ, Naves RV (2012) Planning for optimal conservation of geographical genetic variability within species. Conserv Genet 13:1085–1093. https://doi.org/10.1007/s10592-012-0356-8

Article  Google Scholar 

Diniz-Filho JAF, Soares TN, Lima JS, Dobrovolski R, Landeiro VL, Telles MPC, Rangel TF, Bini LM (2013) Mantel test in population genetics. Genet Mol Biol 36:475–485. https://doi.org/10.1590/S1415-47572013000400002

Article  PubMed  PubMed Central  Google Scholar 

Diniz-Filho JAF, Barbosa ACOF, Collevatti RG, Chaves LJ, Terribile LC, Lima-Ribeiro MS, Telles MPC (2016) Spatial autocorrelation analysis and ecological niche modelling allows inference of range dynamics driving the population genetic structure of a Neotropical savanna tree. J Biogeogr 43:167–177. https://doi.org/10.1111/jbi12622

Article  Google Scholar 

Diniz-Filho JAF, Barbosa ACO, Chaves LJ, Souza KS, Dobrovolski R, Rattis L, Terribile LC, Lima-Ribeiro MS, de Oliveira G, Brum FT et al (2018) Overcoming the worst of both worlds: integrating climate change and habitat loss into spatial conservation planning of genetic diversity in the Brazilian Cerrado. Biodiv Conserv 29:1555–1570. https://doi.org/10.1007/s10531-018-1667-y

Article  Google Scholar 

Diniz-Filho JAF, Souza KS, Bini LM et al (2019) A macroecological approach to evolutionary rescue and adaptation to climate change. Ecography 42:1124–1141

Article  Google Scholar 

Diniz-Filho JAF, Soares TN, Chaves LJ, Terribile LC, Telles MPC (2022) Isolation-by-ecology in a Neotropical savanna tree. Tree Genet Genom 18:23. https://doi.org/10.1007/s11295-022-01555-w

Article  CAS  Google Scholar 

Doyle JJ, Doyle JJ (1987) Isolation of plant DNA from fresh tissue. Focus 12:13–15

Google Scholar 

Eckert CG, Samis KE, Lougheed SC (2008) Genetic variation across species’ geographical ranges: the central–marginal hypothesis and beyond. Mol Ecol 17:1170–1188. https://doi.org/10.1111/j1365-294X200703659x

Article  CAS  PubMed  Google Scholar 

Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14:2611–2620. https://doi.org/10.1111/j.1365-294X.2005.02553.x

Article  CAS  PubMed  Google Scholar 

Frankham R (2005) Genetics and extinction. Biol Conserv 126:131–140. https://doi.org/10.1016/jbiocon200505002

Article  Google Scholar 

Frankham R (2010) Challenges and opportunities of genetic approaches to biological conservation. Biol Conserv 143:1919–1927. https://doi.org/10.1016/jbiocon201005011

Article  Google Scholar 

Freitas BM, Paxton RJ (1998) A comparison of two pollinators: the introduced honey bee Apis mellifera and an indigenous bee Centris tarsata on cashew Anacardium occidentale in its native range of NE Brazil. J Appl Ecol 35:109–121. https://doi.org/10.1046/j1365-2664199800278x

Article  Google Scholar 

Gaggiotti OE, Chao A, Peres-Neto P, Chiu H, Edwards C, Fortin J, Jost L, Richards CM, Selkoe KA (2018) Diversity from genes to ecosystems: a unifying framework to study variation across biological metrics and scales. Evol Appl 11(7):1176–1193. https://doi.org/10.1111/eva.12593

Giudicelli GC, Turchetto C, Silva-Arias GA, Freitas LB (2019) Influence of climate changes on the potential distribution of a widespread grassland species in South America. Perspect Plant Ecol Evol Syst 41:125496. https://doi.org/10.1016/jppees2019125496

Article  Google Scholar 

Gotelli NJ, Stanton-Geddes J (2015) Climate change, genetic markers and species distribution modelling. J Biogeogr 42:1577–1585

Article  Google Scholar 

Hoffmann AA, Willi Y (2008) Detecting genetic responses to environmental change. Nat Rev Genet 9:421–432. https://doi.org/10.1038/nrg2339

Article  CAS  PubMed  Google Scholar 

Jay F, Manel S, Alvarez N, Durand E, Thuiller W, Holderegger R, Taberlet P, François O (2012) Forecasting changes in population genetic structure of Alpine plants in response to global warming. Mol Ecol 21:2354–2368. https://doi.org/10.1111/j1365-294x201205541x

Article  PubMed  Google Scholar 

Jay F, François O, Durand EY, Blum MGB (2015) POPS: a software for prediction of population genetic structure using latent regression models. J Stat Soft. https://doi.org/10.18637/jssv068i09

Article  Google Scholar 

Jombart T (2008) adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 24:1403–1405. https://doi.org/10.1093/bioinformatics/btn129

Article  CAS  PubMed  Google Scholar 

Klink CA, Machado RB (2005) Conservation of the Brazilian Cerrado. Conserv Biol 19:707–713. https://doi.org/10.1111/j1523-1739200500702x

Article  Google Scholar 

Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I (2015) Clumpak: a program for identifying clustering modes and packaging population structure inferences across K. Mol Ecol Res 15:1179–1191. https://doi.org/10.1111/17550998.12387

Article  CAS  Google Scholar 

Li Y-L, Liu J-X (2018) StructureSelector: a web-based software to select and visualize the optimal number of clusters using multiple methods. Mol Ecol Resour 18:176–177. https://doi.org/10.1111/1755-0998.12719

Article  PubMed  Google Scholar 

Lima NE, Lima-Ribeiro MS, Tinoco CF, Terribile LC, Collevatti RG (2014) Phylogeography and ecological niche modelling, coupled with the fossil pollen record, unravel the demographic history of a Neotropical swamp palm through the Quaternary. J Biogeogr 41:673–686. https://doi.org/10.1111/jbi12269

Article  Google Scholar 

Lima JS, Telles MPC, Chaves LJ, Lima-Ribeiro MS, Collevatti RG (2017) Demographic stability and high historical connectivity explain the diversity of a savanna tree species in the Quaternary. Ann Bot 119:645–657. https://doi.org/10.1093/aob/mcw257

Article  PubMed  PubMed Central  Google Scholar 

Lorenzi H (2006) Árvores brasileiras: manual de identificação e cultivo de plantas arbóreas do Brasil, 2nd edn. Instituto Plantarum, Nova Odessa, p 627

Google Scholar 

Manly BFJ (1985) The statistics of natural selection. Chapman and Hall, London, p 484

Google Scholar 

Manly BFJ (1997) Randomization, bootstrap and monte carlo methods in biology. Chapman and Hall, London, p 399

Google Scholar 

Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GAB, Kent J (2000) Biodiversity hotspots for conservation priorities. Nature 403:853–858. https://doi.org/10.1038/35002501

Article  CAS  PubMed  Google Scholar

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