Liu LP. Characteristics of blue algal bloom in Dianchi Lake and analysis on its cause. Res Environ Sci. 1999;12:36–37.
Liu YM, Chen W, Li DH, Shen YW, Liu YD, Song LR. Analysis of paralytic shellfish toxins in Aphanizomenon DC-1 from Lake Dianchi, China. Environ Toxicol. 2006;21:289–95.
CAS PubMed Article Google Scholar
Dziallas C, Grossart HP. Temperature and biotic factors influence bacterial communities associated with the cyanobacterium Microcystis sp. Environ Microbiol. 2011;13:1632–41.
Parveen B, Ravet V, Djediat C, Mary I, Quiblier C, Debroas D, Humbert JF. Bacterial communities associated with Microcystis colonies differ from free-living communities living in the same ecosystem. Environ Microbiol Rep. 2013;5:716–24.
Shi LM, Cai YF, Kong FX, Yu Y. Specific association between bacteria and buoyant Microcystis colonies compared with other bulk bacterial communities in the eutrophic Lake Taihu, China. Environ Microbiol Rep. 2012;4:669–78.
Kouzuma A, Watanabe K. Exploring the potential of algae/bacteria interactions. Curr Opin Biotech. 2015;33:125–9.
CAS PubMed Article Google Scholar
Cooper MB, Smith AG. Exploring mutualistic interactions between microalgae and bacteria in the omics age. Curr Opin Plant Biol. 2015;26:147–53.
Yang L, Xiao L. Outburst, jeopardize and control of cyanobacterial bloom in lakes. Beijing: Science Press; 2011. p. 71–212.
de-Bashan LE, Antoun H, Bashan Y. Involvement of indole-3-acetic-acid produced by the growth-promoting bacterium Azospirillum spp. in promoting growth of Chlorella vulgaris. J Phycol. 2008;44:938–47.
CAS PubMed Article Google Scholar
Xiao Y, Wang L, Wang X, Chen M, Chen J, Tian BY, Zhang BH. Nocardioides lacusdianchii sp. nov., an attached bacterium of Microcystis aeruginosa. Antonie van Leeuwenhoek. 2022;115:141–53.
Shirling EB, Gottlieb D. Methods for characterization of Streptomyces species. Int J Syst Bacteriol. 1966;16:313–40.
Zhang BH, Chen W, Li HQ, Zhou EM, Hu WY, Duan YQ, Mohamad OA, Gao R, Li WJ. An antialgal compound produced by Streptomyces jiujiangensis JXJ 0074T. Appl Microbiol Biotechnol. 2015;99:7673–83.
CAS PubMed Article Google Scholar
Zhang BH, Salam N, Cheng J, Xiao M, Li HQ, Yang JY, Zha DM, Li WJ. Citricoccus lacusdiani sp. nov., an actinobacterium promoting Microcystis growth with limited soluble phosphorus. Antonie Van Leeuwenhoek. 2016;109:1457–65.
CAS PubMed Article Google Scholar
Zhang BH, Salam N, Cheng J, Li HQ, Yang JY, Zha DM, Guo QG, Li WJ. Microbacterium lacusdiani sp. nov., a phosphate–solubilizing novel actinobacterium isolated from mucilaginous sheath of Microcystis. J Antibiot. 2017;70:147–51.
Smibert RM, Krieg NR. Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR, editors. Methods for general and molecular bacteriology. Washington, DC: American Society for Microbiology; 1994. p. 607–54.
Dong XZ, Cai MY. Manual of systematic identification of common bacteria. Beijing: Science Press; 2001. p. p349–89.
Minnikin DE, Collins MD, Goodfellow M. Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol. 1979;47:87–95.
Tamaoka J, Katayama-Fujimura Y, Kuraishi H. Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol. 1983;54:31–36.
Schleifer KH, Kandler O. Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev. 1972;36:407–77.
CAS PubMed PubMed Central Article Google Scholar
Tang SK, Wang Y, Chen Y, Lou K, Cao LL, Xu LH, Li WJ. Zhihengliuella alba sp. nov., and emended description of the genus Zhihengliuella. Int J Syst Evol Microbiol. 2009;59:2025–32.
CAS PubMed Article Google Scholar
Yoon SH, Ha SM, Kwon S, Lim J, Kim Y, Seo H, Chun J. Introducing EzBiocloud: a taxonomically united database of 16S rRNA gene sequences and whole–genome assemblies. Int J Syst Evol Microbiol. 2017;67:1613–7.
CAS PubMed PubMed Central Article Google Scholar
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28:2731–9.
CAS PubMed PubMed Central Article Google Scholar
Saitou N, Nei M. The neighbor–joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406–42.
Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool. 1971;20:406–16.
Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol. 1981;17:368–76.
CAS PubMed Article Google Scholar
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 1985;39:783–91.
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30:2114–20.
CAS PubMed PubMed Central Article Google Scholar
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012;19:455–77.
CAS PubMed PubMed Central Article Google Scholar
Massouras A, Hens K, Gubelmann C, Uplekar S, Decouttere F, Rougemont J, Cole ST, Deplancke B. Primer-initiated sequence synthesis to detect and assemble structural variants. Nat Methods. 2010;7:485–6.
CAS PubMed Article Google Scholar
Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014;30:2068–9.
CAS PubMed Article Google Scholar
Bland C, Ramsey TL, Sabree F, Lowe M, Brown K, Kyrpides NC, Hugenholtz P. CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinforma. 2007;8:209.
Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence–based species delimitation with confidence intervals and improved distance functions. BMC Bioinforma. 2013;14:60.
Xiao Y, Chen J, Chen M, Deng SJ, Xiong ZQ, Tian BY, Zhang BH. Mycolicibacterium lacusdiani sp. nov., an attached bacterium of Microcystis aeruginosa. Front Microbiol. 2022;13:861291.
PubMed PubMed Central Article Google Scholar
Vaz-Moreira I, Lopes AR, Faria C, Spröer C, Schumann P, Nunes OC, Manaia CM. Microbacterium invictum sp. nov., isolated from homemade compost. Int J Syst Evol Microbiol. 2009;59:2036–41.
Ohta Y, Ito T, Mori K, Nishi S, Shimane Y, Mikuni K, Hatada Y. Microbacterium saccharophilum sp. nov., isolated from a sucrose-refining factory. Int J Syst Evol Microbiol. 2013;63:2765–9.
CAS PubMed Article Google Scholar
Kageyama A, Takahashi Y, Ōmura S. Microbacterium deminutum sp. nov., Microbacterium pumilum sp. nov. and Microbacterium aoyamense sp. nov. Int J Syst Evol Microbiol. 2006;56:2113–7.
CAS PubMed Article Google Scholar
Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today. 2006;33:152–5.
Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinforma. 2013;14:60.
Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol. 2014;64:346–51.
CAS PubMed Article Google Scholar
Chun J, Oren A, Ventosa A, Christensen H, Arahal DR, da Costa MS, Rooney AP, Yi H, Xu XW, De Meyer S, Trujillo ME. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol. 2018;68:461–6.
CAS PubMed Article Google Scholar
Hoke AK, Reynoso G, Smith MR, Gardner MI, Lockwood DJ, Gilbert NE, Wilhelm SW, Becker IR, Brennan GJ, Crider KE, Farnan SR, Mendoza V, Poole AC, Zimmerman ZP, Utz LK, Wurch LL, Steffen MM. Genomic signatures of Lake Erie bacteria suggest interaction in the Microcystis phycosphere. PLoS ONE. 2021;16:e0257017.
CAS PubMed PubMed Central Article Google Scholar
Zhang BH, Salam N, Cheng J, Li HQ, Yang JY, Zha DM, Zhang YQ, Ai MJ, Hozzein WN, Li WJ. Modestobacter lacusdianchii sp. nov., a phosphate-solubilizing actinobacterium with ability to promote Microcystis growth. PLoS ONE. 2016;11:e0161069.
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