Natalini, J.G., Singh, S., and Segal, L.N., The dynamic lung microbiome in health and disease., Nat. Rev. Microbiol., 2023, vol. 21, pp. 222—235. https://doi.org/10.1038/s41579-022-00821-x

Article  CAS  PubMed  Google Scholar 

Orlova, E.A., Ogarkov, O.B., Kondratov, I.G., et al., Analysis of diversity and functional potential of the bacterial communities in tuberculomas, Kletochnaya Tekhnol. Biol. Med., 2024, no. 1, pp. 29—36. https://doi.org/10.47056/1814-3490-2024-1-29-36

Orlova, E.A., Ogarkov, O.B., Suzdalnitskiy, A.E., et al., Analysis of microbial diversity in caseous necrosis of tuberculosis foci, Mol. Genet. Microbiol. Virol., 2021, vol. 36, no. 3, pp. 132—138. https://doi.org/10.3103/S0891416821030058

Article  CAS  Google Scholar 

Ogarkov, O.B., Suzdalnitsky, A.E., Kondratov, I.G., Bukin, Yu.S., Orlova, E.A., Sinkov, V.V., Zhdanova, S.N., Belkova, N.L., Rychkova, L.V., and Kolesnikova, L.I., Isolation and whole genome sequencing of a lipophilic anaerobic bacterium, a representative of the species complex Corynebacterium tuberculostearicum, from a tuberculosis focus, Acta Biomed. Sci., 2023, vol. 8, no. 4, pp. 12—19. https://doi.org/10.29413/ABS.2023-8.4.2

Article  Google Scholar 

Russell, D.G., Cardona, P.J., Kim, M.J., Allain, S., and Altare, F., Foamy macrophages and the progression of the human tuberculosis granuloma, Nat. Immunol., 2009, vol. 10, no. 9, pp. 943—948. https://doi.org/10.1038%2Fni.1781

Article  CAS  PubMed  PubMed Central  Google Scholar 

Mellmann, A., Becker, K., von Eiff, C., et al., Sequencing and staphylococci identification, Emerg. Infect. Dis., 2006, vol. 12, no. 2, pp. 333—336. https://doi.org/10.3201%2Feid1202.050962

Article  CAS  PubMed  PubMed Central  Google Scholar 

Sun, D.L., Jiang, X., Wu, Q.L., and Zhou, N.Y., Intragenomic heterogeneity of 16S rRNA genes causes overestimation of prokaryotic diversity, Appl. Environ. Microbiol., 2013, vol. 79, no. 19, pp. 5962—5969. https://doi.org/10.1128/aem.01282-13

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jolley, K.A., Bray, J.E., and Maiden, M.C.J., Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications, Wellcome Open Res., 2018, vol. 24, no. 3, p. 124. https://doi.org/10.12688/wellcomeopenres.14826.1

Article  CAS  Google Scholar 

Raue, S., Fan, S.H., Rosenstein, R., et al., The genome of Staphylococcus epidermidis O47, Front. Microbiol., 2020, vol. 25, no. 11, p. 2061. https://doi.org/10.3389%2Ffmicb.2020.02061

Article  Google Scholar 

Sarathy, J.P. and Dartois, V., Caseum: a niche for Mycobacterium tuberculosis drug-tolerant persisters, Clin. Microbiol. Rev., 2020, vol. 33, no. 3, p. 1128. https://doi.org/10.1128/cmr.00159-19

Article  CAS  Google Scholar 

Palmieri, B., Vadalà, M., Roncati, L., et al., The long-standing history of Corynebacterium parvum, immunity, and viruses, J. Med. Virol., 2020, vol. 92, no. 11, pp. 2429—2439. https://doi.org/10.1002%2Fjmv.26100

Article  CAS  PubMed  PubMed Central  Google Scholar