Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25(17):3389–3402. https://doi.org/10.1093/nar/25.17.3389

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ashok-Kumar T (2013) CFSSP: chou and fasman secondary structure prediction server. WIDE SPECTRUM: Res J 1(9):15–19. https://doi.org/10.5281/zenodo.50733

Article  Google Scholar 

Biswal S et al (2020) Efficacy of a tetravalent dengue vaccine in healthy children aged 4–16 years: a randomized, placebo-controlled, phase 3 trial. Lancet 395:1423–1433. https://doi.org/10.1016/S0140-6736(20)30414-1

Article  CAS  PubMed  Google Scholar 

Biswal S, Patel SS, Rauscher M (2022) Safety of dengue vaccine? Clin Infect Dis 76:771–772. https://doi.org/10.1093/cid/ciac808

Article  PubMed Central  Google Scholar 

Blessy JJ, Sharmila DJS (2015) Molecular simulation of N-acetylneuraminic acid analogs and molecular dynamics studies of cholera toxin-Neu5Gc complex. J Biomol Struct Dyn 33:1126–1139. https://doi.org/10.1080/07391102.2014.931825

Article  CAS  PubMed  Google Scholar 

Bui HH, Sidney J, Li W et al (2007) Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines. BMC Bioinformatics 8:361. https://doi.org/10.1186/1471-2105-8-361

Article  CAS  PubMed  PubMed Central  Google Scholar 

Byk LA, Gamarnik AV (2016) Properties and functions of the dengue virus capsid protein. Annu Rev Virol 3(1):263–281. https://doi.org/10.1146/annurev-virology-110615-042334. (Epub 2016)

Article  CAS  PubMed  PubMed Central  Google Scholar 

Byrd CM, Dai D, Grosenbach DW, Berhanu A, Jones KF et al (2013) A novel inhibitor of dengue virus replication that targets the capsid protein. Antimicrob Agents Chemother 57:15–25. https://doi.org/10.1128/AAC.01429-12

Article  CAS  PubMed  PubMed Central  Google Scholar 

Calis JJA, Maybeno M, Greenbaum JA, Weiskopf D, De -Silva, A. D., Sette, A., Kesmir, C., Peters, B. (2013) Properties of MHC class I presented peptides that enhance immunogenicity. PLoSComputBiol 8(1):361. https://doi.org/10.1371/journal.pcbi.1003266

Article  Google Scholar 

de -Silva, A. (2022) Safety of dengue vaccine? Clin Infect Dis 76:371–372. https://doi.org/10.1093/cid/ciac690

Article  Google Scholar 

De-Maso CR et al (2022) Specificity and breadth of the neutralizing antibody response to a live attenuated tetravalent dengue vaccine. J Infect Dis 226:1959–1963. https://doi.org/10.1093/infdis/jiac272

Article  CAS  PubMed  Google Scholar 

Deng SQ, Yang X, Wei Y, Chen JT, Wang XJ, Peng HJ (2020) A review on dengue vaccine development. Vaccines (Basel). 8(1):63. https://doi.org/10.3390/vaccines8010063

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dhanda SK, Vita R, Ha B, Grifoni A, Peters B, Sette A (2018) Immunome Browser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins. Bioinformatics 34(22):3931–3933. https://doi.org/10.1093/bioinformatics/bty463

Article  CAS  PubMed  PubMed Central  Google Scholar 

Diaz-Granados CA et al (2021) Accuracy and efficacy of pre-dengue vaccination screening for previous dengue infection with five commercially available immunoassays: a retrospective analysis of phase 3 efficacy trials. Lancet Infect Dis 21:529–536. https://doi.org/10.1016/S1473-3099(20)30695-2

Article  CAS  PubMed  Google Scholar 

Dimitrov I, Bangov I, Flower DR et al (2014) AllerTOP vol 2—a server for in silico prediction of allergens. J Mol Model 20:2278. https://doi.org/10.1007/s00894-014-2278-5

Article  CAS  PubMed  Google Scholar 

Dixit NK (2021) Design of monovalent and chimeric tetravalent dengue vaccine using an immunoinformatics approach. Int J Pept Res Ther 27(4):2607–2624. https://doi.org/10.1007/s10989-021-10277-x

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dixit NK, Kumar A (2021) Identification of dengue virus proteome B-cell epitopes using an immunoinformatic approach. J Appl Pharm Sci. 11(12):107–113. https://doi.org/10.7324/JAPS.2021.1101209

Article  CAS  Google Scholar 

Durbin AP (2020) Historical discourse on the development of the live attenuated tetravalent dengue vaccine candidate TV003/TV005. Curr 43:9–87. https://doi.org/10.1016/j.coviro.2020.09.005

Article  CAS  Google Scholar 

Durbin AP et al (2020) Immunogenicity and safety of a tetravalent recombinant subunit dengue vaccine in adults previously vaccinated with a live attenuated tetravalent dengue vaccine: results of a phase-I randomized clinical trial. Am J Trop Med Hyg 103:855–863. https://doi.org/10.4269/ajtmh.20-0042. (Epub 2020 May 7)

Article  CAS  PubMed  PubMed Central  Google Scholar 

Echegaray F et al (2021) Adapting rapid diagnostic tests to detect historical dengue virus infections. Front Immunol 12:703887. https://doi.org/10.3389/fimmu.2021.703887

Article  CAS  PubMed  PubMed Central  Google Scholar 

Faustino AF, Guerra GM, Huber RG, Hollmann A, Domingues MM et al (2015) Understanding dengue virus capsid protein disordered N-terminus and pep14-23-based inhibition. ACS Chem Biol 10:517–526. https://doi.org/10.1021/cb500640t

Article  CAS  PubMed  Google Scholar 

Forrat R et al (2021) Analysis of hospitalized and severe dengue cases over the 6 years of follow-up of the tetravalent dengue vaccine (CYD-TDV) efficacy trials in Asia and Latin America. Clin Infect Dis 73:1003–1012. https://doi.org/10.1093/cid/ciab288

Article  CAS  PubMed  PubMed Central  Google Scholar 

Gupta S, Kumar A (2022) Design of an epitope-based peptide vaccine against dengue virus isolate from eastern uttar pradesh. India Int J Pept Res Ther 28(3):91. https://doi.org/10.1007/s10989-022-10402-4

Article  CAS  PubMed  Google Scholar 

Gupta S et al (2013) In silico approach for predicting toxicity of pep tides and proteins. PLoS ONE 8:e73957

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hebditch M, Carballo-Amador MA, Charonis S, Curtis R, Warwicker J (2017) Protein–Sol: A web tool for predicting protein solubility from sequence. Bioinformatics 3:3098–3100. https://doi.org/10.1093/bioinformatics/btx345

Article  CAS  Google Scholar 

Henein S et al (2021) Dengue vaccine breakthrough infections reveal properties of neutralizing antibodies linked to protection. J Clin Investig 131:e147066. https://doi.org/10.1172/JCI147066

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hou J, Ye W, Chen J (2022) Current development and challenges of tetravalent live-attenuated dengue vaccines. Front Immunol 13(24O):13840104. https://doi.org/10.3389/fimmu.2022.840104

Article  CAS  Google Scholar 

Huang AT et al (2022) Beneath the surface: amino acid variation underlying two decades of dengue virus antigenic dynamics in Bangkok. Thailand Plospathog 18:e1010500. https://doi.org/10.1371/journal.ppat.1010500

Article  CAS  Google Scholar 

Imagawa T et al (2021) Virus-like particles with FLAG-tagged enve