Jones AME, Thomas V, Bennett MH, Mansfield J, Grant M. Modifications to the Arabidopsis defense proteome occur prior to significant transcriptional change in response to inoculation with Pseudomonas syringae. Plant Physiol. 2006;142(4):1603–20.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zipfel C. Plant pattern-recognition receptors. Trends Immunol. 2014;35(7):345–51.

Article  CAS  PubMed  Google Scholar 

Dodds PN, Lawrence GJ, Catanzariti AM, Teh T, Wang CIA, Ayliffe MA, Kobe B, Ellis JG. Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes. Proc Natl Acad Sci. 2006;103(23):8888–93.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Van Der Biezen EA, Jones JDG. Plant disease-resistance proteins and the gene-for-gene concept. Trends Biochem Sci. 1998;23(12):454–6.

Article  PubMed  Google Scholar 

Ngou BPM, Ahn H-K, Ding P, Jones JDG. Mutual potentiation of plant immunity by cell-surface and intracellular receptors. Nature. 2021;592(7852):110–5.

Article  CAS  PubMed  Google Scholar 

Yuan M, Jiang Z, Bi G, Nomura K, Liu M, Wang Y, Cai B, Zhou JM, He SY, Xin XF. Pattern-recognition receptors are required for NLR-mediated plant immunity. Nature. 2021;592(7852):105–9.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Martin G, Marquez Y, Mantica F, Duque P, Irimia M. Alternative splicing landscapes in Arabidopsis thaliana across tissues and stress conditions highlight major functional differences with animals. Genome Biol. 2021;22(1):35.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Irimia M, Blencowe BJ. Alternative splicing: decoding an expansive regulatory layer. Curr Opin Cell Biol. 2012;24(3):323–32.

Article  CAS  PubMed  Google Scholar 

Staiger D, Brown JW. Alternative splicing at the intersection of biological timing, development, and stress responses. Plant Cell. 2013;25(10):3640–56.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li S, Yamada M, Han X, Ohler U, Benfey Philip N. High-resolution expression map of the Arabidopsis root reveals alternative splicing and lincRNA regulation. Dev Cell. 2016;39(4):508–22.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Stamm S, Ben-Ari S, Rafalska I, Tang Y, Zhang Z, Toiber D, Thanaraj TA, Soreq H. Function of alternative splicing. Gene. 2005;344:1–20.

Article  CAS  PubMed  Google Scholar 

Garcia-Moreno JF, Romao L. Perspective in alternative splicing coupled to nonsense-mediated mRNA decay. Int J Mol Sci. 2020;21(24):9424.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lu T, Lu G, Fan D, Zhu C, Li W, Zhao Q, Feng Q, Zhao Y, Guo Y, Li W, et al. Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq. Genome Res. 2010;20(9):1238–49.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chisholm ST, Coaker G, Day B, Staskawicz BJ. Host-microbe interactions: shaping the evolution of the plant immune response. Cell. 2006;124(4):803–14.

Article  CAS  PubMed  Google Scholar 

Zhang R, Calixto CPG, Marquez Y, Venhuizen P, Tzioutziou NA, Guo W, Spensley M, Entizne JC, Lewandowska D, Ten Have S, et al. A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing. Nucleic Acids Res. 2017;45(9):5061–73.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Farooq M, Zahra Naqvi R, Amin I, Ur Rehman A, Asif M, Mansoor S. Transcriptome diversity assessment of Gossypium arboreum (FDH228) leaves under control, drought and whitefly infestation using PacBio long reads. Gene. 2023;852:147065.

Article  CAS  PubMed  Google Scholar 

Nevo Y, Kamhi E, Jacob-Hirsch J, Amariglio N, Rechavi G, Sperling J, Sperling R. Genome-wide activation of latent donor splice sites in stress and disease. Nucleic Acids Res. 2012;40(21):10980–94.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ganie SA. RNA chaperones: potential candidates for engineering salt tolerance in rice. Crop Sci. 2020;60(2):530–40.

Article  CAS  Google Scholar 

Ganie SA, Reddy ASN. Stress-induced changes in alternative splicing landscape in rice: functional significance of splice isoforms in stress tolerance. Biology. 2021;10(4):309.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Guerra D, Crosatti C, Khoshro HH, Mastrangelo AM, Mica E, Mazzucotelli E. Post-transcriptional and post-translational regulations of drought and heat response in plants: a spider’s web of mechanisms. Front Plant Sci. 2015;6:57.

Article  PubMed  PubMed Central  Google Scholar 

Motion GB, Amaro TMMM, Kulagina N, Huitema E. Nuclear processes associated with plant immunity and pathogen susceptibility. Brief Funct Genomics. 2015;14(4):243–52.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Matera AG, Wang Z. A day in the life of the spliceosome. Nat Rev Mol Cell Biol. 2014;15(2):108–21.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Reddy AS. Alternative splicing of pre-messenger RNAs in plants in the genomic era. Annu Rev Plant Biol. 2007;58:267–94.

Article  CAS  PubMed  Google Scholar 

Selenko P, Gregorovic G, Sprangers R, Stier G, Rhani Z, Krämer A, Sattler M. Structural basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP. Mol Cell. 2003;11(4):965–76.

Article  CAS  PubMed  Google Scholar 

Liu T, Zhang X, Zhang H, Cheng Z, Liu J, Zhou C, Luo S, Luo W, Li S, Xing X, et al. Dwarf and High Tillering1 represses rice tillering through mediating the splicing of D14 pre-mRNA. Plant Cell. 2022;34(9):3301–18.

Article  PubMed  PubMed Central  Google Scholar 

Hartmann L, Wiessner T, Wachter A. Subcellular compartmentation of alternatively spliced transcripts defines SERINE/ARGININE-RICH PROTEIN30 expression. Plant Physiol. 2018;176(4):2886–903.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chang P, Hsieh HY, Tu SL. The U1 snRNP component RBP45d regulates temperature-responsive flowering in Arabidopsis. Plant Cell. 2022;34(2):834–51.

Article  PubMed  Google Scholar 

Li Y, Guo Q, Liu P, Huang J, Zhang S, Yang G, Wu C, Zheng C, Yan K. Dual roles of the serine/arginine-rich splicing factor SR45a in promoting and interacting with nuclear cap-binding complex to modulate the salt-stress response in Arabidopsis. New Phytol. 2021;230(2):641–55.

Article  CAS  PubMed  Google Scholar 

Park E, Pan Z, Zhang Z, Lin L, Xing Y. The expanding landscape of alternative splicing variation in human populations. Am J Hum Genet. 2018;102(1):11–26.

Article