Exploring In-Silico Immunoepitope Landscape and Genetic Diversity in p72 and CD2v Proteins Across Asian African Swine Fever Virus Isolates

Zhao D, Sun E, Huang L, Ding L, Zhu Y et al (2023) Highly lethal genotype I and II recombinant African swine fever viruses detected in pigs. Nat commun 14:3096. https://doi.org/10.1038/s41467-023-38868-w

Article  CAS  PubMed  PubMed Central  Google Scholar 

Carrascosa JL, Carazo JM, Carrascosa AL, Garcia N, Santisteban A, Vinuela E (1984) General morphology and capsid fine structure of African swine fever virus particles. Virology 132:160–172. https://doi.org/10.1016/0042-6822(84)90100-4

Article  CAS  PubMed  Google Scholar 

Yu M, Morrissy CJ, Westbury HA (1996) Strong sequence conservation of African swine fever virus p72 protein provides the molecular basis for its antigenic stability. Arch Virol 141:1795–1802. https://doi.org/10.1007/BF01718302

Article  CAS  PubMed  Google Scholar 

Yang J, Jing M, Niu Q, Wang J, Zhao Y, Liu M, Guan G, Luo J, Yin H, Liu Z (2022) Identification and characterization of nanobodies specifically against African swine fever virus major capsid protein p72. Front Microbiol 13:1017792. https://doi.org/10.3389/fmicb.2022.1017792

Article  PubMed  PubMed Central  Google Scholar 

Yin D, Geng R, Shao H, Ye J, Qian K, Chen H, Qin A (2022) Identification of novel linear epitopes in P72 protein of African swine fever virus recognized by monoclonal antibodies. Front Microbiol 13:1055820. https://doi.org/10.3389/fmicb.2022.1055820

Article  PubMed  PubMed Central  Google Scholar 

Chang Z, Du Y, Li R et al (2023) Development and characterization of monoclonal antibody against the critical loop structure of african swine fever virus P72 protein veterinary. Microbiology 283:109776. https://doi.org/10.1016/j.vetmic.2023.109776

Article  CAS  Google Scholar 

Blome S, Franzke K, Beer M (2020) African swine fever: a review of current knowledge. Virus Res 287:198099. https://doi.org/10.1016/j.virusres.2020.198099

Article  CAS  PubMed  Google Scholar 

Rowlands RJ, Duarte MM, Boinas F, Hutchings G, Dixon LK (2009) The CD2v protein enhances African swine fever virus replication in the tick vector. Ornithodoros erraticus Virol 393:319–328. https://doi.org/10.1016/j.virol.2009.07.040

Article  CAS  Google Scholar 

Pérez-Núñez D, García-Urdiales E, Martínez-Bonet M, Nogal ML, Barroso S, Revilla Y et al (2015) CD2v interacts with adaptor protein AP-1 during African swine fever infection. PLoS ONE 10:e0123714. https://doi.org/10.1371/journal.pone.0123714

Article  CAS  PubMed  PubMed Central  Google Scholar 

Burmakina G, Malogolovkin A, Tulman ER, Zsak L et al (2016) African swine fever virus serotype-specific proteins are significant protective antigens for African swine fever. J Gen Virol 97:1670–1675. https://doi.org/10.1099/jgv.0.000490

Article  CAS  PubMed  Google Scholar 

Li Z, Chen W, Qiu Z, Li Y, Fan J, Wu K, Li X, Zhao M, Ding H, Fan S, Chen J (2022) African swine fever virus: a review. Life (Basel) 12:1255. https://doi.org/10.3390/life12081255

Article  CAS  PubMed  Google Scholar 

Lee S, Kwon J, Kim BY et al (2022) Development of an accurate and sensitive diagnostic system based on conventional PCR for detection of african swine fever virus in food waste. Indian J Microbiol 62:293–306. https://doi.org/10.1007/s12088-022-01007-y

Article  CAS  PubMed  PubMed Central  Google Scholar 

Parvizpour S, Pourseif MM, Razmara J, Rafi MA, Omidi Y (2020) Epitope-based vaccine design: a comprehensive overview of bioinformatics approaches. Drug Discov Today 25:1034–1042. https://doi.org/10.1016/j.drudis.2020.03.006

Article  CAS  PubMed  Google Scholar 

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410. https://doi.org/10.1016/S0022-2836(05)80360-2

Article  CAS  PubMed  Google Scholar 

Sievers F, Higgins DG (2018) Clustal omega for making accurate alignments of many protein sequences. Protein Sci 27:135–145. https://doi.org/10.1002/pro.3290

Article  CAS  PubMed  Google Scholar 

Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376. https://doi.org/10.1007/BF01734359

Article  CAS  PubMed  Google Scholar 

Tamura K, Stecher G, Kumar S (2021) MEGA11: molecular evolutionary genetics analysis version 11. Mol Biol Evol 38:3022–3027. https://doi.org/10.1093/molbev/msab120

Article  CAS  PubMed  PubMed Central  Google Scholar 

Weaver S, Shank SD, Spielman SJ, Li M, Muse SV, Kosakovsky Pond SL (2018) Datamonkey 20: a modern web application for characterizing selective and other evolutionary processes. Mol Biol Evol 35:773–777. https://doi.org/10.1093/molbev/msx335

Article  CAS  PubMed  PubMed Central  Google Scholar 

Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797. https://doi.org/10.1093/nar/gkh340

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu Q, Ma B, Qian N et al (2019) Structure of the African swine fever virus major capsid protein p72. Cell Res 29:953–955. https://doi.org/10.1038/s41422-019-0232-x

Article  PubMed  PubMed Central  Google Scholar 

Lipman DJ, Pearson WR (1985) Rapid and sensitive protein similarity searches. Science 227:1435–1441. https://doi.org/10.1126/science.2983426

Article  CAS  PubMed  Google Scholar 

Fiser A, Sali A (2003) Modeller: generation and refinement of homology-based protein structure models. Macromol Crystallogr. https://doi.org/10.1016/S0076-6879(03)74020-8

Article  Google Scholar 

Yang J, Yan R, Roy A, Xu D, Poisson J, Zhang Y (2015) The I-TASSER Suite: protein structure and function prediction. Nat Methods 12:7–8. https://doi.org/10.1038/nmeth.3213

Article  CAS  PubMed  PubMed Central  Google Scholar 

Colovos C, Yeates TO (1993) Verification of protein structures: patterns of nonbonded atomic interactions. Protein Sci 2:1511–1519. https://doi.org/10.1002/pro.5560020916

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wiederstein M, Sippl MJ (2007) ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res 35:W407–W410. https://doi.org/10.1093/nar/gkm290

Article  PubMed  PubMed Central  Google Scholar 

Laskowski RA, MacArthur MW, Moss DS, Thornton JM (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Cryst 26:283–291. https://doi.org/10.1107/S0021889892009944

Article  CAS  Google Scholar 

Abraham MJ, Murtola T, Schulz R, Páll S, Smith JC, Hess B, Lindahl E (2015) GROMACS: high performance molecular simulations through multi-level parallelism from laptops to supercomputers. SoftwareX 1:19–25. https://doi.org/10.1016/j.softx.2015.06.001

Article  Google Scholar 

Garcia-Boronat M, Diez-Rivero CM, Reinher EL, Reche PA (2008) PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery. Nucleic Acids Res 36:W35-41. https://doi.org/10.1093/nar/gkn211

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