A database overview of metal-coordination distances in metalloproteins

References

First citationAndreini, C., Cavallaro, G., Lorenzini, S. & Rosato, A. (2013). Nucleic Acids Res. 41, D312–D319.  Web of Science CrossRef CAS PubMed Google Scholar
First citationAndreini, C. & Rosato, A. (2022). Int. J. Mol. Sci. 23, 7684.  CrossRef PubMed Google Scholar
First citationArcovito, A. & della Longa, S. (2012). J. Inorg. Biochem. 112, 93–99.  Web of Science CrossRef CAS PubMed Google Scholar
First citationAscone, I. & Strange, R. (2009). J. Synchrotron Rad. 16, 413–421.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBacarizo, J., Martinez-Rodriguez, S., Martin-Garcia, J. M., Andujar-Sanchez, M., Ortiz-Salmeron, E., Neira, J. L. & Camara-Artigas, A. (2014). PLoS One, 9, e113224.  Web of Science CrossRef PubMed Google Scholar
First citationBazayeva, M., Giachetti, A., Pagliai, M. & Rosato, A. (2023). Int. J. Mol. Sci. 24, 5440.  CrossRef PubMed Google Scholar
First citationBeard, E. J., Sivaraman, G., Vázquez-Mayagoitia, Á., Vishwanath, V. & Cole, J. M. (2019). Sci. Data, 6, 307.  CrossRef PubMed Google Scholar
First citationBeitlich, T., Kühnel, K., Schulze-Briese, C., Shoeman, R. L. & Schlichting, I. (2007). J. Synchrotron Rad. 14, 11–23.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBerman, H., Henrick, K. & Nakamura, H. (2003). Nat. Struct. Mol. Biol. 10, 980.  Web of Science CrossRef Google Scholar
First citationBertini, I., Sigel, A. & Sigel, H. (2001). Editors. Handbook on Metalloproteins, 1st ed. Boca Raton: CRC Press.  Google Scholar
First citationBoutet, S., Lomb, L., Williams, G. J., Barends, T. R. M., Aquila, A., Doak, R. B., Weierstall, U., DePonte, D. P., Steinbrener, J., Shoeman, R. L., Messerschmidt, M., Barty, A., White, T. A., Kassemeyer, S., Kirian, R. A., Seibert, M. M., Montanez, P. A., Kenney, C., Herbst, R., Hart, P., Pines, J., Haller, G., Gruner, S. M., Philipp, H. T., Tate, M. W., Hromalik, M., Koerner, L. J., van Bakel, N., Morse, J., Ghonsalves, W., Arnlund, D., Bogan, M. J., Caleman, C., Fromme, R., Hampton, C. Y., Hunter, M. S., Johansson, L. C., Katona, G., Kupitz, C., Liang, M., Martin, A. V., Nass, K., Redecke, L., Stellato, F., Timneanu, N., Wang, D., Zatsepin, N. A., Schafer, D., Defever, J., Neutze, R., Fromme, P., Spence, J. C. H., Chapman, H. N. & Schlichting, I. (2012). Science, 337, 362–364.  Web of Science CrossRef CAS PubMed Google Scholar
First citationBowman, S. E., Bridwell Rabb, J. & Drennan, C. L. (2016). Acc. Chem. Res. 49, 695–702.  Web of Science CrossRef CAS PubMed Google Scholar
First citationBrás, N. F., Ribeiro, A. J., Oliveira, M., Paixão, N. M., Tamames, J. A., Fernandes, P. A. & Ramos, M. J. (2014). J. Mol. Model. 20, 2271.  PubMed Google Scholar
First citationChapman, H. N., Fromme, P., Barty, A., White, T. A., Kirian, R. A., Aquila, A., Hunter, M. S., Schulz, J., DePonte, D. P., Weierstall, U., Doak, R. B., Maia, F. R. N. C., Martin, A. V., Schlichting, I., Lomb, L., Coppola, N., Shoeman, R. L., Epp, S. W., Hartmann, R., Rolles, D., Rudenko, A., Foucar, L., Kimmel, N., Weidenspointner, G., Holl, P., Liang, M., Barthelmess, M., Caleman, C., Boutet, S., Bogan, M. J., Krzywinski, J., Bostedt, C., Bajt, S., Gumprecht, L., Rudek, B., Erk, B., Schmidt, C., Hömke, A., Reich, C., Pietschner, D., Strüder, L., Hauser, G., Gorke, H., Ullrich, J., Herrmann, S., Schaller, G., Schopper, F., Soltau, H., Kühnel, K.-U., Messerschmidt, M., Bozek, J. D., Hau-Riege, S. P., Frank, M., Hampton, C. Y., Sierra, R. G., Starodub, D., Williams, G. J., Hajdu, J., Timneanu, N., Seibert, M. M., Andreasson, J., Rocker, A., Jönsson, O., Svenda, M., Stern, S., Nass, K., Andritschke, R., Schröter, C.-D., Krasniqi, F., Bott, M., Schmidt, K. E., Wang, X., Grotjohann, I., Holton, J. M., Barends, T. R. M., Neutze, R., Marchesini, S., Fromme, R., Schorb, S., Rupp, D., Adolph, M., Gorkhover, T., Andersson, I., Hirsemann, H., Potdevin, G., Graafsma, H., Nilsson, B. & Spence, J. C. H. (2011). Nature, 470, 73–77.  Web of Science CrossRef CAS PubMed Google Scholar
First citationChristianson, D. W. (1997). Prog. Biophys. Mol. Biol. 67, 217–252.  CrossRef CAS PubMed Google Scholar
First citationCruickshank, D. W. J. (1999). Acta Cryst. D55, 583–601.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationCuypers, M. G., Mason, S. A., Blakeley, M. P., Mitchell, E. P., Haertlein, M. & Forsyth, V. T. (2013). Angew. Chem. Int. Ed. 52, 1022–1025.  Web of Science CrossRef CAS Google Scholar
First citationDudev, T. & Lim, C. (2004). J. Phys. Chem. B, 108, 4546–4557.  Web of Science CrossRef CAS Google Scholar
First citationDudev, T. & Lim, C. (2007). Acc. Chem. Res. 40, 85–93.  CrossRef PubMed CAS Google Scholar
First citationDudev, T., Mazmanian, K. & Lim, C. (2018). Chem. Sci. 9, 4093–4103.  CrossRef CAS PubMed Google Scholar
First citationDworkowski, F. S. N., Hough, M. A., Pompidor, G. & Fuchs, M. R. (2015). Acta Cryst. D71, 27–35.  Web of Science CrossRef IUCr Journals Google Scholar
First citationEbrahim, A., Moreno-Chicano, T., Appleby, M. V., Chaplin, A. K., Beale, J. H., Sherrell, D. A., Duyvesteyn, H. M. E., Owada, S., Tono, K., Sugimoto, H., Strange, R. W., Worrall, J. A. R., Axford, D., Owen, R. L. & Hough, M. A. (2019). IUCrJ, 6, 543–551.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationEchols, N., Morshed, N., Afonine, P. V., McCoy, A. J., Miller, M. D., Read, R. J., Richardson, J. S., Terwilliger, T. C. & Adams, P. D. (2014). Acta Cryst. D70, 1104–1114.  Web of Science CrossRef IUCr Journals Google Scholar
First citationEinsle, O., Andrade, S. L. A., Dobbek, H., Meyer, J. & Rees, D. C. (2007). J. Am. Chem. Soc. 129, 2210–2211.  Web of Science CrossRef PubMed CAS Google Scholar
First citationEl Omari, K., Duman, R., Mykhaylyk, V., Orr, C. M., Latimer-Smith, M., Winter, G., Grama, V., Qu, F., Bountra, K., Kwong, H. S., Romano, M., Reis, R. I., Vogeley, L., Vecchia, L., Owen, C. D., Wittmann, S., Renner, M., Senda, M., Matsugaki, N., Kawano, Y., Bowden, T. A., Moraes, I., Grimes, J. M., Mancini, E. J., Walsh, M. A., Guzzo, C. R., Owens, R. J., Jones, E. Y., Brown, D. G., Stuart, D. I., Beis, K. & Wagner, A. (2023). Commun. Chem. 6, 219.  Web of Science CrossRef PubMed Google Scholar
First citationEmamian, S., Ireland, K. A., Purohit, V., McWhorter, K. L., Maximova, O., Allen, W., Jensen, S., Casa, D. M., Pushkar, Y. & Davis, K. M. (2023). J. Phys. Chem. Lett. 14, 41–48.  CrossRef CAS PubMed Google Scholar
First citationFoster, A. W., Young, T. R., Chivers, P. T. & Robinson, N. J. (2022). Curr. Opin. Chem. Biol. 66, 102095.  CrossRef PubMed Google Scholar
First citationGarcia, J. S., Magalhães, C. S. & Arruda, M. A. (2006). Talanta, 69, 1–15.  Web of Science CrossRef PubMed CAS Google Scholar
First citationGardberg, A. S., Del Castillo, A. R., Weiss, K. L., Meilleur, F., Blakeley, M. P. & Myles, D. A. A. (2010). Acta Cryst. D66, 558–567.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationGarman, E. F. & Weik, M. (2017). Methods Mol. Biol. 1607, 467–489.  CrossRef CAS PubMed Google Scholar
First citationGohara, D. W. & Di Cera, E. (2016). J. Biol. Chem. 291, 20840–20848.  Web of Science CrossRef CAS PubMed Google Scholar
First citationGore, S., Sanz García, E., Hendrickx, P. M. S., Gutmanas, A., Westbrook, J. D., Yang, H., Feng, Z., Baskaran, K., Berrisford, J. M., Hudson, B. P., Ikegawa, Y., Kobayashi, N., Lawson, C. L., Mading, S., Mak, L., Mukhopadhyay, A., Oldfield, T. J., Patwardhan, A., Peisach, E., Sahni, G., Sekharan, M. R., Sen, S., Shao, C., Smart, O. S., Ulrich, E. L., Yamashita, R., Quesada, M., Young, J. Y., Nakamura, H., Markley, J. L., Berman, H. M., Burley, S. K., Velankar, S. & Kleywegt, G. J. (2017). Structure, 25, 1916–1927.  Web of Science CrossRef CAS PubMed Google Scholar
First citationGrime, G. W. & Garman, E. F. (2023). Nucl. Instrum. Methods Phys. Res. B, 540, 237–245.  CrossRef CAS Google Scholar
First citationGrime, G. W., Zeldin, O. B., Snell, M. E., Lowe, E. D., Hunt, J. F., Montelione, G. T., Tong, L., Snell, E. H. & Garman, E. F. (2020). J. Am. Chem. Soc. 142, 185–197.  Web of Science CrossRef CAS PubMed Google Scholar
First citationGucwa, M., Lenkiewicz, J., Zheng, H., Cymborowski, M., Cooper, D. R., Murzyn, K. & Minor, W. (2023). Protein Sci. 32, e4525.  Web of Science CrossRef PubMed Google Scholar
First citationGurusaran, M., Shankar, M., Nagarajan, R., Helliwell, J. R. & Sekar, K. (2014). IUCrJ, 1, 74–81.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationHall, J. P., Poynton, F. E., Keane, P. M., Gurung, S. P., Brazier, J. A., Cardin, D. J., Winter, G., Gunnlaugsson, T., Sazanovich, I. V., Towrie, M., Cardin, C. J., Kelly, J. M. & Quinn, S. J. (2015). Nat. Chem. 7, 961–967.  CrossRef CAS PubMed Google Scholar
First citationHanding, K. B., Niedzialkowska, E., Shabalin, I. G., Kuhn, M. L., Zheng, H. & Minor, W. (2018). Nat. Protoc. 13, 1062–1090.  Web of Science CrossRef CAS PubMed Google Scholar
First citationHarding, M. M. (2001). Acta Cryst. D57, 401–411.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationHarding, M. M. (2002). Acta Cryst. D58, 872–874.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationHarding, M. M. (2004). Acta Cryst. D60, 849–859.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationHarding, M. M. (2006). Acta Cryst. D62, 678–682.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationHarding, M. M., Nowicki, M. W. & Walkinshaw, M. D. (2010). Crystallogr. Rev. 16, 247–302.  Web of Science CrossRef CAS Google Scholar
First citationHelliwell, J. R. (2020). Methods Enzymol. 634, 1–19.  Web of Science CrossRef CAS PubMed Google Scholar
First citationHirano, Y., Kimura, S. & Tamada, T. (2015). Acta Cryst. D71, 1572–1581.  CrossRef IUCr Journals Google Scholar
First citationHolm, R. H., Kennepohl, P. & Solomon, E. I. (1996). Chem. Rev. 96, 2239–2314.  CrossRef PubMed CAS Web of Science Google Scholar
First citationHsin, K., Sheng, Y., Harding, M. M., Taylor, P. & Walkinshaw, M. D. (2008). J. Appl. Cryst. 41, 963–968.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationHu, Y. & Buehler, M. J. (2023). APL Mach. Learn. 1, 010901.  Google Scholar
First citationHummer, A. A. & Rompel, A. (2013). Adv. Protein Chem. Struct. Biol. 93, 257–305.  Web of Science CrossRef CAS PubMed Google Scholar
First citationJinge, W., Qing, Y., Li, L., Nancy Lan, G. & Gangqing, H. (2023). bioRxiv, 2023.10.15.562423.  Google Scholar
First citationKern, J., Alonso-Mori, R., Tran, R., Hattne, J., Gildea, R. J., Echols, N., Glöckner, C., Hellmich, J., Laksmono, H., Sierra, R. G., Lassalle-Kaiser, B., Koroidov, S., Lampe, A., Han, G., Gul, S., Difiore, D., Milathianaki, D., Fry, A. R., Miahnahri, A., Schafer, D. W., Messerschmidt, M., Seibert, M. M., Koglin, J. E., Sokaras, D., Weng, T.-C., Sellberg, J., Latimer, M. J., Grosse-Kunstleve, R. W., Zwart, P. H., White, W. E., Glatzel, P., Adams, P. D., Bogan, M. J., Williams, G. J., Boutet, S., Messinger, J., Zouni, A., Sauter, N. K., Yachandra, V. K., Bergmann, U. & Yano, J. (2013). Science, 340, 491–495.  Web of Science CrossRef CAS PubMed Google Scholar
First citationKnape, M. J., Ahuja, L. G., Bertinetti, D., Burghardt, N. C., Zimmermann, B., Taylor, S. S. & Herberg, F. W. (2015). ACS Chem. Biol. 10, 2303–2315.  CrossRef CAS PubMed Google Scholar
First citationKumar, K. S. D., Gurusaran, M., Satheesh, S. N., Radha, P., Pavithra, S., Thulaa Tharshan, K. P. S., Helliwell, J. R. & Sekar, K. (2015). J. Appl. Cryst. 48, 939–942.  Web of Science CrossRef CAS IUCr Journals

留言 (0)

沒有登入
gif