Aarle, W. van, Palenstijn, W. J., De Beenhouwer, J., Altantzis, T., Bals, S., Batenburg, K. J. & Sijbers, J. (2015). Ultramicroscopy, 157, 35–47.  Web of Science PubMed Google Scholar
Arranz, R., Coloma, R., Chichón, F. J., Conesa, J. J., Carrascosa, J. L., Valpuesta, J. M., Ortín, J. & Martín-Benito, J. (2012). Science, 338, 1634–1637.  CrossRef CAS PubMed Google Scholar
Balyschew, N., Yushkevich, A., Mikirtumov, V., Sanchez, R. M., Sprink, T. & Kudryashev, M. (2023). Nat Commun, 14, 6543.  CrossRef PubMed Google Scholar
Bepler, T., Borst, A. J., Bouvette, J., Cannone, G., Chen, S., Cheng, A., Cheng, A., Fan, Q., Grollios, F., Gupta, H., Gupta, M., Humphreys, T., Kim, P. T., Kuang, H., Li, Y., Noble, A. J., Punjani, A., Rice, W. J., Oscar, S., Sorzano, C., Stagg, S. M., Strauss, J., Yu, L., Carragher, B. & Potter, C. S. (2022). J. Struct. Biol. 214, 107913.  CrossRef PubMed Google Scholar
Berger, C., Dumoux, M., Glen, T., Yee, N. B., Mitchels, J. M., Patáková, Z., Darrow, M. C., Naismith, J. H. & Grange, M. (2023). Nat. Commun. 14, 629.  CrossRef PubMed Google Scholar
Bharat, T. A. M. & Scheres, S. H. W. (2016). Nat. Protoc. 11, 2054–2065.   CrossRef CAS PubMed Google Scholar
Bouvette, J., Huang, Q., Riccio, A. A., Copeland, W. C., Bartesaghi, A. & Borgnia, M. J. (2022). eLife, 11, e80047.  Web of Science CrossRef PubMed Google Scholar
Brent, R. P. (1973). Algorithms for Minimization Without Derivatives, pp. 61–80. Englewood Cliffs: Prentice Hall.  Google Scholar
Caesar, J., Reboul, C. F., Machello, C., Kiesewetter, S., Tang, M. L., Deme, J. C., Johnson, S., Elmlund, D., Lea, S. M. & Elmlund, H. (2020). J. Struct. Biol. X, 4, 100040.  Web of Science PubMed Google Scholar
Cantero, M., Carlero, D., Chichón, F. J., Martín-Benito, J. & De Pablo, P. J. (2022). Cells, 11, 1759.  CrossRef PubMed Google Scholar
Cheng, A., Kim, P. T., Kuang, H., Mendez, J. H., Chua, E. Y. D., Maruthi, K., Wei, H., Sawh, A., Aragon, M. F., Serbynovskyi, V., Neselu, K., Eng, E. T., Potter, C. S., Carragher, B., Bepler, T. & Noble, A. J. (2023). IUCrJ, 10, 77–89.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
Eisenstein, F., Yanagisawa, H., Kashihara, H., Kikkawa, M., Tsukita, S. & Danev, R. (2023). Nat. Methods, 20, 131–138.  Web of Science CrossRef CAS PubMed Google Scholar
Frank, J. (2006). Editor. Electron Tomography: Methods for Three-Dimensional Visualization of Structures in the Cell, 2nd ed. New York: Springer.  Google Scholar
Gilbert, P. (1972). J. Theor. Biol. 36, 105–117.  CrossRef CAS PubMed Web of Science Google Scholar
Hagen, W. J. H., Wan, W. & Briggs, J. A. G. (2017). J. Struct. Biol. 197, 191–198.  Web of Science CrossRef PubMed Google Scholar
Heyen, U. & Schüler, D. (2003). Appl. Microbiol. Biotechnol. 61, 536–544.  CrossRef PubMed CAS Google Scholar
Hylton, R. K. & Swulius, M. T. (2021). iScience, 24, 102959.  CrossRef PubMed Google Scholar
Khavnekar, S., Erdmann, P. & Wan, W. (2023). Microsc. Microanal. 29, 1020.  CrossRef PubMed Google Scholar
Kimanius, D., Dong, L., Sharov, G., Nakane, T. & Scheres, S. H. W. (2021). Biochem. J. 478, 4169–4185.  Web of Science CrossRef CAS PubMed Google Scholar
Liu, H.-F., Zhou, Y., Huang, Q., Piland, J., Jin, W., Mandel, J., Du, X., Martin, J. & Bartesaghi, A. (2023). Nat. Methods, 20, 1909–1919.  CrossRef PubMed Google Scholar
Mastronarde, D. N. & Held, S. R. (2017). J. Struct. Biol. 197, 102–113.  Web of Science CrossRef PubMed Google Scholar
Nakane, T., Kotecha, A., Sente, A., McMullan, G., Masiulis, S., Brown, P. M. G. E., Grigoras, I. T., Malinauskaite, L., Malinauskas, T., Miehling, J., Uchański, T., Yu, L., Karia, D., Pechnikova, E. V., de Jong, E., Keizer, J., Bischoff, M., McCormack, J., Tiemeijer, P., Hardwick, S. W., Chirgadze, D. Y., Murshudov, G., Aricescu, A. R. & Scheres, S. H. W. (2020). Nature, 587, 152–156.  Web of Science CrossRef CAS PubMed Google Scholar
Punjani, A., Rubinstein, J. L., Fleet, D. J. & Brubaker, M. A. (2017). Nat. Methods, 14, 290–296.  Web of Science CrossRef CAS PubMed Google Scholar
Pyle, E. & Zanetti, G. (2021). Biochem. J. 478, 1827–1845.  CrossRef CAS PubMed Google Scholar
Rigort, A., Bäuerlein, F. J. B., Villa, E., Eibauer, M., Laugks, T., Baumeister, W. & Plitzko, J. M. (2012). Proc. Natl Acad. Sci. USA, 109, 4449–4454.  Web of Science CrossRef CAS PubMed Google Scholar
Rohou, A. & Grigorieff, N. (2015). J. Struct. Biol. 192, 216–221.  Web of Science CrossRef PubMed Google Scholar
Scaramuzza, S. & Castaño-Díez, D. (2021). PLoS Biol. 19, e3001318.  CrossRef PubMed Google Scholar
Schenk, A. D., Cavadini, S., Thomä, N. H. & Genoud, C. (2020). J. Chem. Inf. Model. 60, 2561–2569.  CrossRef CAS PubMed Google Scholar
Tacke, S., Erdmann, P., Wang, Z., Klumpe, S., Grange, M., Plitzko, J. & Raunser, S. (2021). J. Struct. Biol. 213, 107743.  CrossRef PubMed Google Scholar
Tang, G., Peng, L., Baldwin, P. R., Mann, D. S., Jiang, W., Rees, I. & Ludtke, S. J. (2007). J. Struct. Biol. 157, 38–46.  Web of Science CrossRef PubMed CAS Google Scholar
Tegunov, D. & Cramer, P. (2019). Nat. Methods, 16, 1146–1152.  Web of Science CrossRef CAS PubMed Google Scholar
Turk, M. & Baumeister, W. (2020). FEBS Lett. 594, 3243–3261.  CrossRef CAS PubMed Google Scholar
Wagner, F. R., Watanabe, R., Schampers, R., Singh, D., Persoon, H., Schaffer, M., Fruhstorfer, P., Plitzko, J. & Villa, E. (2020). Nat. Protoc. 15, 2041–2070.  CrossRef CAS PubMed Google Scholar
Xiong, Q., Morphew, M. K., Schwartz, C. L., Hoenger, A. H. & Mastronarde, D. N. (2009). J. Struct. Biol. 168, 378–387.  Web of Science CrossRef PubMed Google Scholar
Zheng, S., Wolff, G., Greenan, G., Chen, Z., Faas, F. G. A., Bárcena, M., Koster, A. J., Cheng, Y. & Agard, D. A. (2022). J. Struct. Biol. X, 6, 100068.  Web of Science PubMed Google Scholar
Zheng, S. Q., Palovcak, E., Armache, J.-P., Verba, K. A., Cheng, Y. & Agard, D. A. (2017). Nat. Methods, 14, 331–332.  Web of Science CrossRef CAS PubMed Google Scholar
Zivanov, J., Otón, J., Ke, Z., von Kügelgen, A., Pyle, E., Qu, K., Morado, D., Castaño-Díez, D., Zanetti, G., Bharat, T. A., Briggs, J. A. & Scheres, S. H. W. (2022). eLife, 11, e83724.  CrossRef PubMed Google Scholar