Charrel R.N., Attoui H., Butenko A.M., Clegg J.C., Deubel V., Frolova T.V., Gould E.A., Gritsun T.S., Heinz F.X., Labuda M., Lashkevich V.A., Loktev V., Lundkvist A., Lvov D.V., Mandl C.W., Niedrig M., Papa A., Petrov V.S., Plyusnin A., Randolph S., Süss J., Zlobin V.I., de Lamballerie X. 2014. Tick-borne virus diseases of human interest in Europe. Clin. Microbiol. Infect. 10 (12), 1040‒1055. https://doi.org/10.1111/j.1469-0691.2004.01022.x

Article  Google Scholar 

Ruzek D.Z., Avšič Županc T., Borde J., Chrdle A., Eyer L., Karganova G., Kholodilov I., Knap N., Ko-zlovskaya L., Matveev A., Miller A.D., Oso-lodkin D.I., Överby A.K., Tikunova N., Tkachev S., Zajkowska J. 2019. Tick-borne encephalitis in Europe and Russia: Review of pathogenesis, clinical features, therapy, and vaccines. Antiviral Res. 164, 23–51. https://doi.org/10.1016/j.antiviral.2019.01.014

Article  CAS  PubMed  Google Scholar 

Khasnatinov M.A., Ustanikova K., Frolova T.V., Pogodina V.V., Bochkova N.G., Levina L.S., Slovak M., Kazimirova M., Labuda M., Klempa B., Eleckova E., Gould E.A., Gritsun T.S. 2009. Non-hemagglutinating flaviviruses: Molecular mechanisms for the emergence of new strains via adaptation to European ticks. PLoS One. 4, e7295. https://doi.org/10.1371/journal.pone.0007295

Article  CAS  PubMed  PubMed Central  Google Scholar 

Deviatkin A.A., Kholodilov I.S., Vakulenko Y.A., Karganova G.G., Lukashev A.N. 2020. Tick-borne encephalitis virus: An emerging ancient zoonosis? Viruses. 12, 247. https://doi.org/10.3390/v12020247

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wang S.S., Liu J.Y., Wang B.Y., Wang W.J., Cui X.M., Jiang J.F., Sun Y., Guo W.B., Pan Y.S., Zhou Y.H., Lin Z.T., Jiang B.G., Zhao L., Cao W.C. 2023. Geographical distribution of Ixodes persulcatus and associated pathogens: Analysis of integrated data from a China field survey and global published data. One Health. 16, 100508. https://doi.org/10.1016/j.onehlt.2023.100508

Article  PubMed  PubMed Central  Google Scholar 

Chausov E.V., Ternovoi V.A., Protopopova E.V., Kononova J.V., Konovalova S.N., Pershikova N.L., Loktev V.B., Romanenko V.N., Ivanova N.V., Bolshakova N.P., Moskvitina N.S. 2010. Variability of the tick-borne encephalitis virus genome in the 5′ noncoding region derived from ticks Ixodes persulcatus and Ixodes pavlovskyi in Western Siberia. Vector Borne Zoonotic Dis. 10, 365‒375. https://doi.org/10.1089/vbz.2009.0064

Article  PubMed  Google Scholar 

Ternovoi V.A., Gladysheva A.V., Ponomareva E.P., Mikryukova T.P., Protopopova E.V., Shvalov A.N., Konovalova S.N., Chausov E.V., Loktev V.B. 2019. Variability in the 3′ untranslated regions of the genomes of the different tick-borne encephalitis virus subtypes. Virus Genes. 55, 448‒457. https://doi.org/10.1007/s11262-019-01672-0

Article  CAS  PubMed  Google Scholar 

Gritsun T.S., Gould E.A. 2006. The 3' unrtanslated region of tick-borne flaviviruses originated by the duplication of long repeat sequences within the open reading frame. Virology. 354, 217‒223. https://doi.org/10.1016/j.virol.2006.03.052

Article  CAS  PubMed  Google Scholar 

Gritsun T.S., Gould E.A. 2006. Direct repeats in the 3' untranslated regions of mosquito-borne flaviviruses: Possible implications for virus transmission. J. Gen. Virol. 87 (Pt. 11), 3297‒3305. https://doi.org/10.1099/vir.0.82235-0

Article  CAS  PubMed  Google Scholar 

Gritsun T.S., Gould E.A. 2007. Origin and evolution of flavivirus 5' UTRs and panhandles: Trans-terminal duplications? Virology. 366, 8‒15. https://doi.org/10.1016/j.virol.2007.04.011

Article  CAS  PubMed  Google Scholar 

Alvarez D.E., Filomatori C.V., Gamarnik A.V. 2008. Functional analysis of dengue virus cyclization sequences located at the 5′ and 3′ UTRs. Virology. 375, 223‒235.

Article  CAS  PubMed  Google Scholar 

Ecker M., Allison S.L., Meixner T., Heinz F.X. 1999. Sequence analysis and genetic classification of tick-borne encephalitis viruses from Europe and Asia. J. Gen. Virol. 80 (Pt. 1), 179–185. https://doi.org/10.1099/0022-1317-80-1-179

Article  CAS  PubMed  Google Scholar 

Demina T.V., Dzhioev Y.P., Verkhozina M.M., Kozlova I.V., Tkachev S.E., Plyusnin A., Doroshchen-ko E.K., Lisak O.V., Zlobin V.I. 2010. Genotyping and characterization of the geographical distribution of tick-borne encephalitis virus variants with a set of molecular probes. J. Med. Virol. 82, 965–976. https://doi.org/10.1002/jmv

Article  CAS  PubMed  Google Scholar 

Kozlova I.V., Demina T.V., Tkachev S.E., Doroshchenko E.K., Lisak O.V., Verkhozina M.M., Karan L.S., Dzhioev Y.P., Paramonov, A.I., Suntsova O.V., Savinova Y.S., Chernoivanova O.O., Ruzek D., Tikunova N.V., Zlobin V.I. 2018. Characteristics of the Baikal subtype of tick-borne encephalitis virus circulating in Eastern Siberia. Acta Biomed. Sci. 3 (4), 53–60. https://doi.org/10.29413/ABS.2018-3.4.9

Article  Google Scholar 

Dai X., Shang G., Lu S., Yang J., Xu J. 2018. A new subtype of eastern tick-borne encephalitis virus discovered in Qinghai-Tibet Plateau, China. Emerg. Microbes Infect. 7, 74. https://doi.org/10.1038/s41426-018-0081-6

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ternovoi V.A., Protopopova E.V., Chausov E.V., Novikov D.V., Leonova G.N., Netesov S.V., Loktev V.B. 2007. Novel variant of tickborne encephalitis virus, Russia. Emer. Infect. Dis. 13, 1574‒1578. https://doi.org/10.3201/eid1310.070158

Article  Google Scholar 

Chausov E.V., Ternovoy V.A., Protopopova E.V., Konovalova S.N., Kononova Yu.V., Tupota N.L., Moskvitina N.S., Romanenko V.N., Ivanova N.V., Bol’shakova N.P., Leonova G.N., Loktev V.B. 2011. Molecular genetic analysis of the complete genome of tick-borne encephalitis virus (Siberia Subtype): Modern Kolarovo-2008 isolate. Probl. Osobo Opasnykh Infekts. 4 (110), 44–48. https://doi.org/10.21055/0370-1069-2011-4(110)-44-48

Article  Google Scholar 

Mikryukova T.P., Moskvitina N.S., Kononova Y.V., Korobitsyn I.G., Kartashov M.Y., Tyutenkov O.Y., Protopopova E.V., Romanenko V.N., Chausov E.V., Gashkov S.I., Konovalova S.N., Moskvitin S.S., Tupota N.L., Sementsova A.O., Ternovoi V.A., Loktev V.B. 2014. Surveillance of tick-borne encephalitis virus in wild birds and ticks in Tomsk city and its suburbs (Western Siberia). Ticks Tick Borne Dis. 5 (2), 145‒151. https://doi.org/10.1016/j.ttbdis.2013.10.004

Article  PubMed  Google Scholar 

Mikriukova T.P., Chausov E.V., Konovalova S.N., Kononova Iu.V., Protopopova E.V., Kartashov M.Iu., Ternovoi V.A., Glushkova L.I., Korabel’nikov I.V., Egorova I.Iu., Loktev V.B. 2014. Genetic diversity of the tick-borne encephalitis virus in Ixodes persulcatus ticks in northeastern European Russia. Parazitologiya. 48 (2), 131‒149.

CAS  Google Scholar 

Korobitsyn I.G., Moskvitina N.S., Tyutenkov O.Y., Gashkov S.I., Kononova Y.V., Moskvitin S.S., Romanenko V.N., Mikryukova T.P., Protopopova E.V., Kartashov M.Y., Chausov E.V., Konovalova S.N., Tupota N.L., Sementsova A.O., Ternovoi V.A., Loktev V.B. 2021. Detection of tick-borne pathogens in wild birds and their ticks in Western Siberia and high level of their mismatch. Folia Parasitol. (Praha). 68, 2021‒2024. https://doi.org/10.14411/fp.2021.024

Article  CAS  Google Scholar 

Ponomareva E.P., Ternovoi V.A., Mikryukova T.P., Protopopova E.V., Gladysheva A.V., Shvalov A.N., Konovalova S.N., Chausov E.V., Loktev V.B. 2017. Adaptation of tick-borne encephalitis virus from human brain to different cell cultures induces multiple genomic substitutions. Arch. Virol. 162, 3151‒3156. https://doi.org/10.1007/s00705-017-3442-x

Article  CAS  PubMed  Google Scholar 

National Research Council. 1996. Guide for the Care and Use of Laboratory Animals. Washington, DC: National Academies Press. https://doi.org/10.17226/5140

Syurin V.N. 1970. Prakticheskaya virusologiya (Practical Virology). Moscow: Kolos.

Kuno G., Gubler D.J., Santiago de Weil N.S. 1985. Antigen capture ELISA for the identification of dengue viruses. J. Virol. Methods. 12 (1‒2), 93‒103. https://doi.org/10.1016/0166-0934(85)90011-4

Article  CAS  PubMed  Google Scholar 

Ternovoi V.A., Kurzhukov G.P., Sokolov Y.V., Ivanov G.Y., Ivanisenko V.A., Loktev A.V., Ryder R.W., Netesov S.V., Loktev V.B. 2003. Tick-borne encephalitis with hemorrhagic syndrome, Novosibirsk region, Russia, 1999. Emer. Infect. Dis. 9, 743‒746. https://doi.org/10.3201/eid0906.030007

Article  Google Scholar 

Davies T.J., Pedersen A.B. 2008. Phylogeny and geography predict pathogen community similarity in wild primates and humans. Proc. Biol. Sci. 275, 1695‒1701. https://doi.org/10.1098/rspb.2008.0284

Article  PubMed  PubMed Central  Google Scholar 

Woolhouse M.E.J., Haydon D.T., Antia R. 2005. Emerging pathogens: The epidemiology and evolution of species jumps. Trends Ecol. Evol. 20, 238‒244. https://doi.org/10.1016/j.tree.2005.02.009

Article  PubMed  PubMed Central  Google Scholar 

Loverdo C., Lloyd-Smith J.O. 2013. Evolutionary invasion and escape in the presence of deleterious mutations. PLoS One. 8, e61879. https://doi.org/10.1371/journal.pone.0068179

Article  CAS  Google Scholar 

Sanjuan R., Nebot M.R., Chirico N., Mansky L.M., Belshaw R. 2010. Viral mutation rates. J. Virol. 84, 9733‒9748. https://doi.org/10.1128/JVI.00694-10

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lalic J., Cuevas J.M., Elena S.F. 2011. Effect of host species on the distribution of mutational fitness effects for an RNA virus. PLoS Genet. 7, e1002378. https://doi.org/10.1371/journal.pgen.1002378

Article  CAS  PubMed  PubMed Central  Google Scholar 

Kozlovskaya L.I., Osolodkin D.I., Shevtsova A.S., Romanova L.Iu., Rogova Y.V., Dzhivanian T.I., Lyapustin V.N., Pivanova G.P., Gmyl A.P., Palyulin V.A., Karganova G.G. 2010. GAG-binding variants of tick-borne encephalitis virus. Virology. 398, 262–272. https://doi.org/10.1016/j.virol.2009.12.012

Article  CAS  PubMed  Google Scholar 

Kopecky J., Grubhoffer L., Kovar V., Jindrak L., Vokurkova D. 1999. A putative host cell receptor for tick-borne encephalitis virus identified by anti-idiotypic antibodies and virus affinoblotting. Intervirology. 42, 9–16. https://doi.org/10.1159/000024954

Article  CAS  PubMed  Google Scholar 

Navarro-Sanchez E., Altmeyer R., Amara A., Schwartz O., Fieschi F., Virelizier J.L., Arenzana-Seisdedos F., Despres P. 2003. Dendritic-cell-specific ICAM3-grabbing non-integrin is essential for the productive infection of human dendritic cells by mosquito-cell-derived dengue viruses. EMBO Rep. 4, 723–728. https://doi.org/10.1038/sj.embor.embor866