Genome constitution and evolution of Elymus atratus (Poaceae: Triticeae) inferred from cytogenetic and phylogenetic analysis

Adderley S, Sun GL (2014) Molecular evolution and nucleotide diversity of nuclear plastid phosphoglycerate kinase (PGK) gene in Triticeae (Poaceae). Gene 533:142–148

Article  CAS  PubMed  Google Scholar 

Assadi M, Runemark H (1995) Hybridisation, genomic constitution and generic delimitation in Elymus s. l. (Poaceae: Triticeae). Plant Syst Evol 194:189–205

Article  Google Scholar 

Barkworth ME, Jacobs SWL (2009) Connorochloa: a new genus in Triticeae. Breed Sci 59:685–686

Article  Google Scholar 

Baum BR, Yang JL, Yen C (1995) Taxonomic separation of Kengyilia (Poaceae: Triticeae) in relation to nearest related Roegneria, Elymus, and Agropyron, based on some morphological characters. Plant Syst Evol 194:123–132

Article  Google Scholar 

Baum BR, Yang JL, Yen C, Agafonov AV (2011) A taxonomic synopsis of the genus Campeiostachys Drobov. J Syst Evol 49:146–159

Article  Google Scholar 

Cai LB (1997) A taxonomical study on the genus Roegneria C. Koch from China. Acta Phytotax Sin 35:148–177

Google Scholar 

Dewey DR (1984) The genomic system of classification as a guide to intergeneric hybridization with the perennial Triticeae. In: Gustafson JP (ed) Gene manipulation in plant improvement: 16th Stadler genetics symposium. Springer US, Boston, pp 209–279

Chapter  Google Scholar 

Dong ZZ, Fan X, Sha LN, Wang Y, Zeng J, Kang HY, Zhang HQ, Wang XL, Zhang L, Ding CB (2015) Phylogeny and differentiation of the St genome in Elymus L. sensu lato (Triticeae; Poaceae) based on one nuclear DNA and two chloroplast genes. BMC Plant Biol 15:179

Article  PubMed  PubMed Central  Google Scholar 

Dou QW, Zhang TL, Tsujimoto H (2011) Physical mapping of repetitive sequences and genome analysis in six Elymus species by in situ hybridization. J Syst Evol 49:347–352

Article  Google Scholar 

Doyle JJT, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15

Google Scholar 

Gao G, Gou XM, Wang Q, Zhang Y, Deng JB, Ding CB, Zhang L, Zhou YH, Yang RW (2014) Phylogenetic relationships and Y genome origin in Chinese Elymus (Triticeae: Poaceae) based on single copy gene DMC1. Biochem Syst Ecol 57:420–426

Article  CAS  Google Scholar 

Guindon S, Delsuc F, Dufayard JF, Gascuel O (2009) Estimating maximum likelihood phylogenies with PhyML. Methods Mol Biol 537:113–137

Article  CAS  PubMed  Google Scholar 

Han FP, Gao Z, Birchler JA (2009) Reactivation of an inactive centromere reveals epigenetic and structural components for centromere specification in Maize. Plant Cell 21:1929–1939

Article  CAS  PubMed  PubMed Central  Google Scholar 

Heslop-Harrison JS (1992) Molecular cytogenetics, cytology and genomic comparisons in the Triticeae. Hereditas 116:93–99

Article  Google Scholar 

Huang SX, Sirikhachornkit A, Su XJ, Faris J, Gill B, Haselkorn R, Gornicki P (2002) Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat. Proc Natl Acad Sci 99:8133–8138

Article  CAS  PubMed  PubMed Central  Google Scholar 

Huelsenbeck JP, Ronquist F (2001) MrBayes: bayesian inference of phylogenetic trees. Bioinformatics 17:754–755

Article  CAS  PubMed  Google Scholar 

Jensen KB (1990) Cytology, fertility, and morphology of Elymus kengii (Keng) Tzvelev and E. grandiglumis (Keng) A. Lve (Triticeae: Poaceae). Genome 33:563–570

Article  Google Scholar 

Kellogg EA, Appels R, Mason-Gamer RJ (1996) When genes tell different stories: the diploid genera of Triticeae (Gramineae). Syst Bot 21:321–347

Article  Google Scholar 

Kimber G, Alonso LC (1981) The analysis of meiosis in hybrids. III. Tetraploid hybrids. Can J Genet Cytol 23:235–254

Article  Google Scholar 

Kuo PC (1987) Flora republicae popularis sinicae. Science Press, Beijing

Google Scholar 

Lei YX, Fan X, Sha LN, Wang Y, Kang HY, Zhou YH, Zhang HQ (2016) Phylogenetic relationships and the maternal donor of Roegneria (Triticeae: Poaceae) based on three nuclear DNA sequences (ITS, Acc1, and Pgk1) and one chloroplast region (trnL-F). J Syst Evol 65:185–191

CAS  Google Scholar 

Lei YX, Liu J, Fan X, Sha LN, Wang Y, Kang HY, Zhou YH, Zhang HQ (2018) Phylogeny and maternal donor of Roegneria and its affinitive genera (Poaceae: Triticeae) based on sequence data for two chloroplast DNA regions (ndhF and trnH–psbA). J Syst Evol 56:105–119

Article  Google Scholar 

Lei YX, Fan X, Sha LN, Wang Y, Kang HY, Zhou YH, Zhang HQ (2022) Phylogenetic relationships and the maternal donor of Roegneria (Triticeae: Poaceae) based on three nuclear DNA sequences (ITS, Acc1, and Pgk1) and one chloroplast region (trnL-F). J Syst Evol 60:305–318

Article  Google Scholar 

Li CB, Zhang DM, Ge S, Lu BR, Hong DY (2001) Identification of genome constitution of Oryza malampuzhaensis, O. minuta, and O. punctata by multicolor genomic in situ hybridization. Theor Appl Genet 103:204–211

Article  CAS  Google Scholar 

Liu YH (1985) Studies on the karyotypes of 11 species of Elymus from China. Plant Sci J 3:325–330

Google Scholar 

Liu QL, Ge S, Tang HB, Zhang XL, Zhu GF, Lu BR (2006) Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences. New Phytol 170:411–420

Article  CAS  PubMed  Google Scholar 

Liu QL, Liu L, Ge S, Fu LP, Bai SQ, Lv X, Wang QK, Chen W, Wang FY, Wang LH et al (2022) Endo-allopolyploidy of autopolyploids and recurrent hybridization—A possible mechanism to explain the unresolved Y-genome donor in polyploid Elymus species (Triticeae: Poaceae). J Syst Evol 60:344–360

Article  Google Scholar 

Löve Á (1984) Conspectus of the Triticeae. Feddes Repertorium 95:425–521

Google Scholar 

Lu BR (1993) Meiotic studies of Elymus nutans and E. jacquemontii (Poaceae, Triticeae) and their hybrids with Pseudoroegneria spicata and seventeen Elymus species. Plant Syst Evol 186:193–212

Article  Google Scholar 

Lu BR, Yan J, Yang JL (1990) Cytological observations on Triticeae materials from Xinjiang. Acta Bot Yunnan 12:57–66

Google Scholar 

Lucía V, Enrique R, Anamthawat-Jónsson K, Martínez-Ortega MM (2019) Cytogenetic evidence for a new genus of Triticeae (Poaceae) endemic to the Iberian Peninsula: description and comparison with related genera. Bot J Linn Soc 4:523–546

Article  Google Scholar 

Mason-Gamer RJ, Orme NL, Anderson CM (2002) Phylogenetic analysis of north American Elymus and the monogenomic Triticeae (Poaceae) using three chloroplast DNA data sets. Genome 45:991–1002

Article  CAS  PubMed  Google Scholar 

Mason-Gamer RJ, Burns MM, Naum M (2005) Polyploidy, introgression, and complex phylogenetic patterns within Elymus. Czech J Genet Plant Breed 41:21–26

Article  Google Scholar 

Middleton CP, Senerchia N, Stein N, Akhunov ED, Keller B, Wicker T, Kilian B (2014) Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe. PLoS ONE 9:e85761

Article  PubMed  PubMed Central  Google Scholar 

Nasernakhaei F, Rahiminejad MR, Saeidi H, Tavassoli M (2015) Phylogenetic relationships among the Iranian Triticum diploid gene pool as inferred from the loci Acc1 and Pgk1. Phytotaxa 201:111–121

Article  Google Scholar 

Okito P, Mott IW, Wu YJ, Wang RC (2009) A Y genome specific STS marker in Pseudoroegneria and Elymus species (Triticeae: Gramineae). Genome 52:391–400

Article  CAS  PubMed  Google Scholar 

Ørgaard M, Heslop-Harrison JS (1994) Investigation of genome relationships between Leymus psathyrostachys and Hordeum inferred from genomic DNA: DNA in situ hybridization. Ann Botany 73:195–203

Article  Google Scholar 

Petersen G, Seberg O (2002) Molecular evolution and phylogenetic application of DMC1. Mol Phylogenet Evol 22:43–50

Article  CAS  PubMed  Google Scholar 

Petersen G, Seberg O, Yde M, Berthelsen K (2006) Phylogenetic relationships of Triticum and Aegilops and evidence for the origin of the A, B, and D genomes of common wheat (Triticum aestivum). Mol Phylogenet Evol 39:70–82

Article  CAS  PubMed  Google Scholar 

Petersen G, Seberg O, Salomon B (2011) The origin of the H, St, W, and Y genomes in allotetraploid species of Elymus L. and Stenostachys Turcz. (Poaceae: Triticeae). Plant Syst Evol 291:197–210

Article  Google Scholar 

Posada D, Crandall K (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817–818

Article  CAS  PubMed  Google Scholar 

Rauscher JT, Doyle JJ, Brown AH (2004) Multiple origins and nrDNA internal transcribed spacer homeologue evolution in the Glycine tomentella (Leguminosae) allopolyploid complex. Genetics 166:987–998

Article  CAS  PubMed  PubMed Central  Google Scholar 

Sakamoto S, Muramatsu M (1966) Cytogenetic studies in the tribe Triticeae. II. Tetraploid and hexaploid hybrids of Agropyron. Japanese J Genet 41:155–168

Article  Google Scholar 

Sears ER (1954) The aneuploids of common wheat. In, pp 1–59

Sha LN, Fan X, Yang RW, Kang HY, Ding CB, Zhang L, Zheng YL, Zhou YH (2010) Phylogenetic relationships between Hystrix and its closely related genera (Triticeae; Poaceae) based on nuclear Acc1, DMC1 and chloroplast trnL-F sequences. Mol Phylogenet Evol 54:327–335

Article  CAS  PubMed  Google Scholar 

Sha LN, Fan X, Wang XL, Dong ZZ, Zeng J, Zhang HQ, Kang HY, Wang Y, Liao JQ, Zhou YH (2017) Genome origin, historical hybridization and genetic differentiation in Anthosachne australasica (Triticeae; Poaceae), inferred from chloroplast rbc L, trn H- psb A and nuclear Acc1 gene sequences. Ann Botany 119:95–107

Article  Google Scholar 

Soltis DE, Soltis P

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