Bradbury ARM, Sidhu S, Dübel S, McCafferty J. Beyond natural antibodies: the power of in vitro display technologies. Nat Biotechnol. 2011;29(3):245–54.
Article CAS PubMed PubMed Central Google Scholar
Adams JJ, Sidhu SS. Synthetic antibody technologies. Curr Opin Struct Biol. 2014;24(1):1–9. https://doi.org/10.1016/j.sbi.2013.11.003.
Article CAS PubMed Google Scholar
Chen G, Sidhu SS. Design and generation of synthetic antibody libraries for phage display. Methods Mol Biol. 2014;1131:113–31.
Article CAS PubMed Google Scholar
Chen G, Gorelik L, Simon KJ, Pavlenco A, Cheung A, Brickelmaier M, et al. Synthetic antibodies and peptides recognizing progressive multifocal leukoencephalopathyspecific point mutations in polyomavirus JC capsid viral protein 1. MAbs. 2015;7(4):681–92. https://doi.org/10.1080/19420862.2015.1038447.
Article CAS PubMed PubMed Central Google Scholar
Miersch S, Sidhu SS. Synthetic antibodies: concepts, potential and practical considerations. Methods. 2012;57(4):486–98. https://doi.org/10.1016/j.ymeth.2012.06.012.
Article CAS PubMed Google Scholar
Marks JD, Hoogenboom HR, Bonnert TP, McCafferty J, Griffiths AD, Winter G. By-passing immunization. J Mol Biol. 1991;222(3):581–97.
Article CAS PubMed Google Scholar
Sidhu SS, Fellouse FA. Synthetic therapeutic antibodies. Nat Chem Biol. 2006;2(12):682–8.
Article CAS PubMed Google Scholar
Fuh G. Synthetic antibodies as therapeutics. Expert Opin Biol Ther. 2007;7(1):73–87. https://doi.org/10.1517/14712598.7.1.73.
Article CAS PubMed Google Scholar
Zhang J, Chiodini R, Badr A, Zhang G. The impact of next-generation sequencing on genomics. J Genet Genomics. 2011;38(3):95–109.
Article PubMed PubMed Central Google Scholar
Mardis ER. Next-generation sequencing platforms. Annu Rev Anal Chem. 2013;6(1):287–303. https://doi.org/10.1146/annurev-anchem-062012-092628.
Shendure J, Aiden EL. The expanding scope of DNA sequencing. Nat Biotechnol. 2012;30(11):1084–94.
Article CAS PubMed PubMed Central Google Scholar
Meaburn E, Schulz R. Next generation sequencing in epigenetics: insights and challenges. Semin Cell Dev Biol. 2012;23(2):192–9.
Article CAS PubMed Google Scholar
Raoult D. Obesity pandemics and the modification of digestive bacterial flora. Eur J Clin Microbiol Infect Dis. 2008;27:631–4.
Article CAS PubMed Google Scholar
Jünemann S, Kleinbölting N, Jaenicke S, Henke C, Hassa J, Nelkner J, et al. Bioinformatics for NGS-based metagenomics and the application to biogas research. J Biotechnol. 2017;261:10–23.
Dong ZC, Chen Y. Transcriptomics: advances and approaches. Sci China Life Sci. 2013;56(10):960–7. https://doi.org/10.1007/s11427-013-4557-2.
Article ADS CAS PubMed Google Scholar
Morganti S, Tarantino P, Ferraro E, D’Amico P, Duso BA, Curigliano G. Next generation sequencing (NGS): a revolutionary technology in pharmacogenomics and personalized medicine in cancer. Adv Exp Med Biol. 2019;1168:9–30. https://doi.org/10.1007/978-3-030-24100-1_2.
Article CAS PubMed Google Scholar
Frese KS, Katus HA, Meder B. Next-generation sequencing: from understanding biology to personalized medicine. Biology. 2013;2(1):378–98.
Article PubMed PubMed Central Google Scholar
Rabbani B, Nakaoka H, Akhondzadeh S, Tekin M, Mahdieh N. Next generation sequencing: implications in personalized medicine and pharmacogenomics. Mol Biosyst. 2016;12(6):1818–30.
Article CAS PubMed Google Scholar
Hong H, Zhang W, Su Z, Shen J, Ge W, Ning B, et al. Next-generation sequencing (NGS): a revolutionary technology in pharmacogenomics and personalized medicine. In: Omics for personalized medicine. New Delhi: Springer India; 2013. p. 39–61. https://doi.org/10.1007/978-81-322-1184-6_3.
Meng W, Zhang B, Schwartz GW, Rosenfeld AM, Ren D, Thome JJC, et al. An atlas of B-cell clonal distribution in the human body. Nat Biotechnol. 2017;35(9):879–84.
Article CAS PubMed PubMed Central Google Scholar
Georgiou G, Ippolito GC, Beausang J, Busse CE, Wardemann H, Quake SR. The promise and challenge of high-throughput sequencing of the antibody repertoire. Nat Biotechnol. 2014;32(2):158–68.
Article CAS PubMed PubMed Central Google Scholar
Robins H. Immunosequencing: applications of immune repertoire deep sequencing. Curr Opin Immunol. 2013;25(5):646–52.
Article CAS PubMed Google Scholar
Mathonet P, Ullman CG. The application of next generation sequencing to the understanding of antibody repertoires. Front Immunol. 2013;4:56179. https://doi.org/10.3389/fimmu.2013.00265/abstract.
Glanville J, D’Angelo S, Khan TA, Reddy ST, Naranjo L, Ferrara F, et al. Deep sequencing in library selection projects: what insight does it bring? Curr Opin Struct Biol. 2015;1(33):146–60.
Rouet R, Jackson KJL, Langley DB, Christ D. Next-generation sequencing of antibody display repertoires. Front Immunol. 2018;9:118. https://doi.org/10.3389/fimmu.2018.00118/full.
Article PubMed PubMed Central Google Scholar
Vaisman-Mentesh A, Wine Y. Monitoring phage biopanning by next-generation sequencing. Methods Mol Biol. 2018;1701:463–73.
Article CAS PubMed Google Scholar
Friedensohn S, Neumeier D, Khan TA, Csepregi L, Parola C, de Vries ARG, et al. Convergent selection in antibody repertoires is revealed by deep learning. bioRxiv. 2020. https://doi.org/10.1101/2020.02.25.965673v1.
Lim YW, Adler AS, Johnson DS. Predicting antibody binders and generating synthetic antibodies using deep learning. MAbs. 2022;14(1).
Sebastiani M, Vacchi C, Manfredi A, Cassone G. Personalized medicine and machine learning: a roadmap for the future. J Clin Med. 2022;11(14):4110.
Article PubMed PubMed Central Google Scholar
Vadapalli S, Abdelhalim H, Zeeshan S, Ahmed Z. Artificial intelligence and machine learning approaches using gene expression and variant data for personalized medicine. Brief Bioinform. 2022;23(5):bbac191. https://doi.org/10.1093/bib/bbac191.
Article CAS PubMed PubMed Central Google Scholar
Choi HL, Yang HR, Shin HG, Hwang K, Kim JW, Lee JH, et al. Generation and next-generation sequencing-based characterization of a large human combinatorial antibody library. Int J Mol Sci. 2023;24(6):6011.
Article CAS PubMed PubMed Central Google Scholar
Zhang Y. Evolution of phage display libraries for therapeutic antibody discovery. MAbs. 2023;15(1).
Kim S, Park I, Park SG, Cho S, Kim JH, Sipper N, et al. Generation, diversity determination, and application to antibody selection of a human naïve fab library. Mol Cells. 2017;40(9):655–66.
Article CAS PubMed PubMed Central Google Scholar
Glanville J, Zhai W, Berka J, Telman D, Huerta G, Mehta GR, et al. Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire. Proc Natl Acad Sci USA. 2009;106(48):20216–21.
Article ADS CAS PubMed PubMed Central Google Scholar
Matochko WL, Chu K, Jin B, Lee SW, Whitesides GM, Derda R. Deep sequencing analysis of phage libraries using Illumina platform. Methods. 2012;58(1):47–55. https://doi.org/10.1016/j.ymeth.2012.07.006.
Article CAS PubMed Google Scholar
Maruthachalam BV, Barreto K, Hogan D, Kusalik A, Geyer CR. Generation of synthetic antibody fragments with optimal complementarity determining region lengths for Notch-1 recognition. Front Microbiol. 2022;13: 931307.
Article PubMed PubMed Central Google Scholar
Henry KA, Next-Generation DNA. Sequencing of VH/VL repertoires: a primer and guide to applications in single-domain antibody discovery. Methods Mol Biol. 2018;1701:425–46.
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