Toyofuku M., Nomura N., Eberl L. 2019. Types and origins of bacterial membrane vesicles. Nat. Rev. Micro-biol. 17, 13–24.
Vitse J., Devreese B. 2020. The contribution of membrane vesicles to bacterial pathogenicity in cystic fibrosis infections and healthcare associated pneumonia. Front. Microbiol. 11, 630.
Cao Y., Lin H. 2021. Characterization and function of membrane vesicles in Gram-positive bacteria. Appl. Microbiol. Biotechnol. 105 (5), 1795–1801.
Stentz R., Jones E., Juodeikis R., Wegmann U., Guirro M., Goldson A.J., Brion A., Booth C., Sudhakar P., Brown I.R., Korcsmáros T., Carding S.R. 2022. The proteome of extracellular vesicles produced by the human gut bacteria Bacteroides thetaiotaomicron in vivo is influenced by environmental and host-derived factors. Appl. Environ. Microbiol. 88 (16), e0053322.
Liu J., Hsieh C.L., Gelincik O., Devolder B., Sei S., Zhang S., Lipkin S.M., Chang YF. 2019. Proteomic characterization of outer membrane vesicles from gut mucosa-derived Fusobacterium nucleatum. J. Proteomics. 195, 125–137.
Zhang K., Chu P., Song S., Yang D., Bian Z., Li Y., Gou H., Jiang Z., Cai R., Li C. 2021. Proteome analysis of outer membrane vesicles from a highly virulent strain of Haemophilus parasuis. Front. Vet. Sci. 8, 756764.
Terán L.C., Distefano M., Bellich B., Petrosino S., Bertoncin P., Cescutti P., Sblattero D. 2020. Proteomic studies of the biofilm matrix including outer membrane vesicles of Burkholderia multivorans C1576, a strain of clinical importance for cystic fibrosis. Microorganisms. 8 (11), 1826.
Zanella I., König E. Tomasi M., Gagliardi A, Frattini L., Fantappiè L., Irene C., Zerbini F., Caproni E., Isaac S.J., Grigolato M., Corbellari R., Valensin S., Ferlenghi I., Giusti F., Bini L., Ashhab Y., Grandi A., Grandi G. 2021. Proteome-minimized outer membrane vesicles from Escherichia coli as a generalized vaccine platform. J. Extracell Vesicles. 10 (4), e12066.
Lee E.Y, Choi D.Y., Kim D.K. 2009. Gram-positive bacteria produce membrane vesicles: Proteomics-based characterization of Staphylococcus aureus-derived membrane vesicles. Proteomics. 9 (24), 5425–5436.
Bitto N.J., Cheng L., Johnston E.L., Pathirana R., Phan T.K., Poon I.K.H., O’Brien-Simpson N.M., Hill A.F., Stinear T.P., Kaparakis-Liaskos M. 2021. Staphylococcus aureus membrane vesicles contain immunostimulatory DNA, RNA and peptidoglycan that activate innate immune receptors and induce autophagy. J. Extracell. Vesicles. 10 (6), e12080.
Olaya-Abril A., Prados-Rosales R., McConnell M.J., Martín-Peña R., González-Reyes J.A., Jiménez-Munguía I., Gómez-Gascón L., Fernández J., Luque-García J.L., García-Lidón C., Estévez H., Pachón J., Obando I., Casadevall A., Pirofski L.A., Rodríguez-Ortega M.J. 2014. Characterization of protective extracellular membrane-derived vesicles produced by Streptococcus pneumoniae. J. Proteomics. 106, 46–60.
Kim Y., Edwards N., Fenselau C. 2016. Extracellular vesicle proteomes reflect developmental phases of Bacillus subtilis. Clin. Proteomics. 13, 6.
Alkandari S.A., Bhardwaj R.G., Ellepola A., Karched M. 2020. Proteomics of extracellular vesicles produced by Granulicatella adiacens, which causes infective endocarditis. PLoS One. 15 (11), e0227657.
Ilinskaya O.N., Mahmud R.S. 2014. Ribonucleases as antiviral agents. Mol. Biol. 48 (5), 615–623.
Shah Mahmud R., Efimova M.A., Ulyanova V., Ravilov R.K., Shuralev E.A., Kolpakov A., Ilinskaya O. 2020. Bacillus pumilus ribonuclease rescues mice infected by double-stranded RNA-containing reovirus serotype 1. Virus Res. 286, 198086.
Ulyanova V., Shah Mahmud R., Laikov A., Dudkina E., Markelova M., Mostafa A., Pleschka S., Ilinskaya O. 2020. Anti-influenza activity of the ribonuclease binase: Cellular targets detected by quantitative proteomics. Int. J. Mol. Sci. 21 (21), 8294.
Garipov A.R., Nesmelov A.A., Cabrera-Fuentes H.A., Ilinskaya O.N. 2014. Bacillus intermedius ribonuclease (BINASE) induces apoptosis in human ovarian cancer cells. Toxicon. 92, 54–59.
Mitkevich V.A., Kretova O.V., Petrushanko I.Y., Burnysheva K.M., Sosin D.V., Simonenko O.V., Ilinskaya O.N., Tchurikov N.A., Makarov A.A. 2013. Ribonuclease binase apoptotic signature in leukemic Kasumi-1 cells. Biochimie. 95 (6), 1344–1349.
Ilinskaya O.N., Singh I., Dudkina E., Ulyanova V., Kayumov A., Barreto G. 2016. Direct inhibition of oncogenic KRAS by Bacillus pumilus ribonuclease (binase). Biochim. Biophys. Acta. 1863 (7 Pt A), 1559–1567.
Faizullin D., Valiullina Y., Salnikov V., Zelenikhin P., Zuev Y., Ilinskaya O. 2023. Fibrin-rhamnogalacturonan I composite gel for therapeutic enzyme delivery to intestinal tumors. Int. J. Mol. Sci. 24 (2), 926.
Kharitonova M.A., Kolpakov A.I., Kupriyanova-Ashina F.G. 2018. Intensification of secreted Bsn ribonuclease Bacillus subtilis production under salt stress. Vestn. Biotekhnol. Fiz.-Khim. Biol. im. Ovchinnikova, 14 (2), 42–47.
Arinushkina E.V. 1970. Rukovodstvo po khimicheskomu analizu pochv (Guide to the Chemical Analysis of Soils). Moscow: Mosk. Gos. Univ.
Liao Y., Smyth G.K., Shi W. 2014. featureCounts: An efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics. 30 (7), 923–930.
Konovalova O.A., Yakovleva G.Yu., Steryakov O.V., Trushin M.V. 2013. Scanning probe microscopy in the study of morphometric changes and physical parameters of Escherichia coli bacteria under the action of 2,4,6-trinitrotoluene. W. Appl. Sci. J. 23 (4), 507–509.
Chernov V.M., Chernova O.A., Mouzykantov A.A., Efimova I.R., Shaymardanova G.F., Medvedeva E.S., Trushin M.V. 2011. Extracellular vesicles derived from Acholeplasma laidlawii PG8. Sci. World J. 11, 1120–1130.
Yu N.Y., Wagner J.R., Laird M.R., Melli G., Rey S., Lo R., Dao P., Sahinalp S.C., Ester M., Foster L.J., Brinkman F.S.L. 2010. PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics. 26 (13), 1608–1615.
Kanehisa M., Sato Y., Morishima K. 2016). BlastKOA-LA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences. J. Mol. Biol. 428, 726–731.
Goedhart J., Luijsterburg M.S. 2020. VolcaNoseR is a web app for creating, exploring, labeling and sharing volcano plots. Sci. Rep. 10, 20560.
Article ADS CAS Google Scholar
Adhikari S., Curtis P.D. 2016. DNA methyltransferases and epigenetic regulation in bacteria. FEMS Microbiol. Rev. 40 (5), 575–591.
Dorward D.W., Garon C.F. 1990. DNA is packaged within membrane-derived vesicles of Gram-negative but not Gram-positive bacteria. Appl. Environ. Microbiol. 56 (6), 1960–1962.
Article ADS CAS Google Scholar
Jiang Y., Kong Q., Roland K.L., Curtiss R. 2014. Membrane vesicles of Clostridium perfringens type A strains induce innate and adaptive immunity. Int. J. Med. Microbiol. 304 (3–4), 431–443.
Liao S., Klein M.I., Heim K.P., Fan Y, Bitoun J.P., Ahn S.J., Burne R.A., Koo H, Brady L.J., Wen Z.T. 2014. Streptococcus mutans extracellular DNA is upregulated during growth in biofilms, actively released via membrane vesicles, and influenced by components of the protein secretion machinery. J. Bacteriol. 196 (13), 2355–2366.
Mendelson N.H., Bourque A., Wilkening K., Anderson K.R., Watkins J.C. 1999. Organized cell swimming motions in Bacillus subtilis colonies: Patterns of short-lived whirls and jets. J. Bacteriol. 181 (2), 600–609.
Guttenplan S.B., Kearns D.B. 2013. Regulation of flagellar motility during biofilm formation. FEMS Microbiol. Rev. 37 (6), 849–871.
Barnhart M.M., Chapman M.R. 2006. Curli biogenesis and function. Annu. Rev. Microbiol. 60, 131–147.
Dragoš A., Kovács Á.T., Claessen D. 2017. The role of functional amyloids in multicellular growth and development of Gram-positive bacteria. Biomolecules. 7 (3), 60.
Malishev R., Abbasi R., Jelinek R., Chai L. 2018. Bacterial model membranes reshape fibrillation of a functional amyloid protein. Biochemistry. 57 (35), 5230–5238.
Böhning J., Ghrayeb M., Pedebos C., Abbas D.K., Khalid S., Chai L., Bharat T.A.M. 2022. Donor-strand exchange drives assembly of the TasA scaffold in Bacillus subtilis biofilms. Nat. Commun. 13 (1), 7082.
留言 (0)