Adamack A, Gruber B (2014a) PopGenReport: simplifying basic population genetic analyses in R. Methods Ecol Evol 5:384–387. https://doi.org/10.1111/2041-210x.12158
Adamack AT, Gruber B (2014b) PopGenReport: simplifying basic population genetic analyses in R. Methods Ecol Evol 5:384–387. https://doi.org/10.1111/2041-210X.12158
Aguilar R, Quesada M, Ashworth L et al (2008) Genetic consequences of habitat fragmentation in plant populations: Susceptible signals in plant traits and methodological approaches. Mol Ecol 17:5177–5188. https://doi.org/10.1111/j.1365-294X.2008.03971.x
Aguirre-Planter E, Furnier GR, Eguiarte LE (2000) Low levels of genetic variation within and high levels of genetic differentiation among populations of species of Abies from southern Mexico and Guatemala. Am J Bot 87:362–371. https://doi.org/10.2307/2656632
Article PubMed CAS Google Scholar
Andersen US, Córdova JPP, Sørensen M, Kollmann J (2006) Conservation and utilisation of Abies guatemalensis Rehder (Pinaceae)– An endangered endemic conifer in Central America. Biodivers Conserv 15:3131–3151. https://doi.org/10.1007/s10531-005-5405-x
Bacles CFE, Lowe AJ, Ennos RA (2006) Effective seed dispersal across a fragmented landscape. Science 311:628. https://doi.org/10.1126/science.1121543
Bougeard S, Dray S (2018) Supervised multiblock analysis in R with the ade4 package. J Stat Softw 86:1–17. https://doi.org/10.18637/jss.v086.i01
Breed MF, Harrison PA, Blyth C et al (2019) The potential of genomics for restoring ecosystems and biodiversity. Nat Rev Genet 20:615–628. https://doi.org/10.1038/s41576-019-0152-0
Article PubMed CAS Google Scholar
Chung MY, Merilä J, Li J et al (2023) Neutral and adaptive genetic diversity in plants: An overview. Front Ecol Evol 11:1116814
Consejo Nacional de Áreas Protegidas -CONAP- (2020) Estrategia nacional para la conservación del pinabete Abies guatemalensis Rehder 2019–2028. Documento técnico No. 06-2020. https://conap.gob.gt/wp-content/uploads/2023/11/Estrategia-Nacional-para-la-Conservacion-del-Pinabete-2019-2028.pdf
R Core Team (2022) R: A language and environment for statistical computing
Delgado P, Piñero D, Chaos A et al (1999) High population differentiation and genetic variation in the endangered Mexican pine Pinus Rzedowskii (Pinaceae). Am J Bot 86:669–676
Article PubMed CAS Google Scholar
Delnevo N, Piotti A, Carbognani M et al (2021) Genetic and ecological consequences of recent habitat fragmentation in a narrow endemic plant species within an urban context. Biodivers Conserv 30:3457–3478. https://doi.org/10.1007/s10531-021-02256-x
Di Rienzo A, Peterson AC, Garza JC et al (1994) Mutational processes of simple-sequence repeat loci in human populations. Proc Natl Acad Sci U S A 91:3166–3170. https://doi.org/10.1073/pnas.91.8.3166
Article PubMed PubMed Central Google Scholar
Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh tissue. Phytochem Bull 19:11–15
Duminil J, Fineschi S, Hampe A et al (2007) Can population genetic structure be predicted from life-history traits? Am Nat 169:662–672. https://doi.org/10.1086/513490
Dunnington D (2023) ggspatial: Spatial Data Framework for ggplot2_. R package version 1.1.9. https://CRAN.R-project.org/package=ggspatial
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Mol Ecol 14:2611–2620. https://doi.org/10.1111/j.1365-294X.2005.02553.x
Article PubMed CAS Google Scholar
François O, Durand E (2010) Spatially explicit Bayesian clustering models in population genetics. Mol Ecol Resour 10:773–784. https://doi.org/10.1111/j.1755-0998.2010.02868.x
Frankham R, Ballou JD, Briscoe DA (2002) Introduction to Conservation Genetics. Cambridge University Press, Cambridge
Frankham R, Ballou JD, Briscoe DA (2004) A primer of conservation genetics. Cambridge University Press, New York, United States of America
Frankham R, Ballou JD, Ralls K et al (2017) Genetic management of fragmented animal and plant populations. Oxford University Press
Frichot E, François O (2015) LEA: An R package for landscape and ecological association studies. Methods Ecol Evol 6:925–929. https://doi.org/10.1111/2041-210X.12382
Frichot E, Mathieu F, Trouillon T et al (2014) Fast and efficient estimation of individual ancestry coefficients. Genetics 196:973–983. https://doi.org/10.1534/genetics.113.160572
Article PubMed PubMed Central Google Scholar
Gardner M (2013) Abies guatemalensis var. guatemalensis. The IUCN Red List of Threatened Species 2013. https://doi.org/10.2305/IUCN.UK.2013-1.RLTS.T46186032A2795168.en. Accessed on 16 Apr 2024
Gillespie JH, John H, Gillespie (1998) Johns Hopkins University, Baltimore, Md
González AV, Gómez-Silva V, Ramírez MJ, Fontúrbel FE (2020) Meta-analysis of the differential effects of habitat fragmentation and degradation on plant genetic diversity. Conserv Biol 34:711–720. https://doi.org/10.1111/cobi.13422
Goudet J (2005) hierfstat, a package for r to compute and test hierarchical F-statistics. Mol Ecol Notes 5:184–186. https://doi.org/10.1111/j.1471-8286.2004.00828.x
Gruber B, Adamack AT (2015) landgenreport: a new r function to simplify landscape genetic analysis using resistance surface layers. Mol Ecol Resour 15:1172–1178. https://doi.org/10.1111/1755-0998.12381
Guichoux E, Lagache L, Wagner S et al (2011) Current trends in microsatellite genotyping. Mol Ecol Resour 11:591–611. https://doi.org/10.1111/j.1755-0998.2011.03014.x
Article PubMed CAS Google Scholar
Habel JC, Zachos FE, Dapporto L et al (2015) Population genetics revisited– towards a multidisciplinary research field. Biol J Linn Soc 115:1–12. https://doi.org/10.1111/bij.12481
Heredia-Bobadilla RL, Gutiérrez-González G, Arzate-Fernández A-M, Franco-Maass S (2018) Genetic variability of Mountain Pine (Pinus hartwegii Lindl) in the protection of flora and fauna area Nevado de Toluca. In: El-Esawi MA (ed) Genetic Diversity in Plant Species - Characterization and Conservation. IntechOpen, Rijeka. Ch. 6
Hoban S, Bruford M, D’Urban Jackson J et al (2020) Genetic diversity targets and indicators in the CBD post-2020 Global Biodiversity Framework must be improved. Biol Conserv 248:108654. https://doi.org/10.1016/j.biocon.2020.108654
Hollister JW (2023) elevatr: Access elevation data from various APIs. R package version 0.99.0. https://CRAN.R-project.org/package=elevatr/
Jardón-Barbolla L, Delgado-Valerio P, Geada-López G et al (2011) Phylogeography of Pinus subsection Australes in the Caribbean Basin. Ann Bot 107:229–241. https://doi.org/10.1093/aob/mcq232
Jombart T (2008) Adegenet: A R package for the multivariate analysis of genetic markers. Bioinformatics 24:1403–1405. https://doi.org/10.1093/bioinformatics/btn129
Article PubMed CAS Google Scholar
Jombart T, Devillard S, Balloux F (2010) Discriminant analysis of principal components: a new method for the analysis of genetecally structured populations. BMC Genet 1:94. https://doi.org/10.1186/1471-2156-11-94
Jump AS, Peñuelas J (2006) Genetic effects of chronic habitat fragmentation in a wind-pollinated tree. Proc Natl Acad Sci U S A 103:8096–8100. https://doi.org/10.1073/pnas.0510127103
Article PubMed PubMed Central CAS Google Scholar
Kamvar ZN, Tabima JF, Gr̈unwald NJ (2014) Poppr: An R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction. PeerJ 2:e281. https://doi.org/10.7717/peerj.281
Article PubMed PubMed Central Google Scholar
Keenan K, McGinnity P, Cross TF et al (2013) diveRsity: An R package for the estimation and exploration of population genetics parameters and their associated errors. Methods Ecol Evol 4:782–788. https://doi.org/10.1111/2041-210X.12067
Kimura M, Crow JF (1964) The number of alleles that can be maintained in a finite population. Genetics 49:725–738
留言 (0)