Deciphering growth abilities of fusarium oxysporum f. sp. pisi under variable temperature, pH and nitrogen

Introduction

Garden pea (Pisum sativum L.) is a popular winter legume commonly used as food for humans and animal feed. Pea seeds are a rich source of carbohydrates (56–74%), proteins (21–33%), and minerals like iron (97%), selenium (42%), molybdenum (12%), and zinc (41%) (Parihar et al., 2020, 2021, 2022). All of these nutrient components in peas are a key ingredient for national food security that can be fed to people. In addition, pea seeds are able to minimize the risk of various chronic diseases such as diabetes, maintain blood cholesterol levels, and promote cardiovascular health as they have significant amounts of antioxidants, Vitamin (A, B, E, and K), omega fatty acids and anti-inflammatory agents (Ekvall et al., 2006; Marinangeli and Jones, 2011; Singh et al., 2013). Further, the role of Garden pea as an important crop rotation promoting sustainable cropping system due to their inherent ability to fix nitrogen leading to balanced soil health and productivity is widely acknowledged (Sharma et al., 2020). According to the Food and Agriculture Organization (FAO, Food and Agriculture Organization, 2020), the global statistics for green pea and dry pea production in 2020 are 49.7 megatons and 47.2 megatons, respectively. The Indian subcontinent contributes to the bulk of pea production globally and ranks second to China in green pea production at 5.73 mega tonnes. In terms of dried pea production, India ranks fifth after Russia with 0.8 mega tonnes. It is estimated that the world population could reach 10 billion by 2050 and the production of nutritious food should be ensured to continue to feed the growing population despite the reduction in arable land. In addition, increasing climate changes and already vulnerable industrial systems are causing severe stress on farmland, public health, and the ecosystem (Anonymous, 2019).

The major barricade in hampering Garden pea production is biotic stress with the soil borne diseases being the most notable factor posing threat to pea farming across the world. Fusarium wilt (FW) caused by Fusarium oxysporum f. sp. pisi (Fop) is one of the major biotic stress that leads to continuous and severe yield losses. Buxton and Storey (1954) reported the emergence of pea wilt in Britain as a serious problem and found an association with Fusarium species. Fop is a soil-borne fungus that includes both non-pathogenic strains and economically important plant pathogens. It has been known in the United States since 1928. In India, the disease was first reported by Sukapure et al. (1957) from Bombay. Chupps and Sherf (1960) first recognized Fusarium wilt of peas in Minnesota in 1918. Pea wilt disease was first elucidated and distinguished from root rot by Jones and Linford (1925). They designated it as undescribed wilt disease. The disease caught on and was found in 50 fields in Wisconsin, causing huge losses to pea growers in the area compared to root rot disease. The causative agent of the disease was named as Fothoceras App and Wr var. pisi in 1928 (Linford, 1928). Over time, the name race 1 of Fusarium oxysporum Schl f.sp. Due to the characterization, pisi (van Hall) was named as the causal factor. Snyder and Hansen (1940) reported that the genus Fusarium belongs to the class Fungi imperfecti, which includes many species and many forms within species. Based on host interactions, Kraft (1994) classified numerous isolates of Fusarium oxysporum f.sp. pisi and found that it is controlled by the genetic makeup of both the host and the pathogen. The fungus protrudes the root tissue and invades the xylem vessels of the vascular bundles, clogging the bundles and restricting the movement of water minerals to the top of the plant. This leads to yellowing and drying symptoms of the infected plant. If the invasion occurs in earlier stages of the plant, the fungus will kill the plant. When invasion occurs at later stages, kernel shrinkage and loss of high yields can be visualized (Linford, 1928). The fungus enters plant tissues either through wounds or by direct penetration of the epidermis (Nyvall and Haglund, 1972). Armstrong and Armstrong (1974) revealed their findings that when the fungus invades wounds, the frequency of symptom onset and the rate of wilting increase. Fusarium solani f.sp. pisi and Fusarium oxysporum f.sp. pisi infects the root, invades the xylem vessels and becomes associated with the plants and seeds (Maheshwari et al., 1980). Lin (1991) reported that wilt caused by Fusarium oxysporum f.sp. pisi that appear in the flowering phase can be accompanied by yellowing of the leaves and discoloration.

The yield-limiting factor in form of “Fop” can result in 100% loss of crop (Aslam et al., 2019; El-Sharkawy et al., 2021; Deng et al., 2022). When the pea crop is included in crop rotation, it paves the way for Fop to build up the inoculum in the soil. The extraordinary nature of chlamydospores ensures that the pathogen lives and is viable in the soil for more than 10 years (Kraft et al., 1994; Aslam et al., 2019; El-Sharkawy et al., 2021; Deng et al., 2022). Previous records show that four races of Fop have been identified and characterized as races 1, 2, 5, and 6, respectively (Haglund and Kraft, 1970, 1979; Jenkins et al., 2021). Strains demonstrate resistance to Fop by having a single dominant gene (one for each race) for races 1, 5, and 6, whereas race 2 resistance has been identified as quantitative, exaggerating the severity (McPhee et al., 2012; Bani et al., 2018). To deal with the consequences, the focus should be on researching intelligent technologies in agriculture and adapting the country to the climate crisis and food security. In this context, we want to better understand the pathogen and its response to harsh climatic conditions. Our aim is to study the optimization conditions and combination effects of climatic factors on the growth of Fop isolates.

Being a part of Disease cycle, Abiotic factors, i.e., environmental factors, play a key role in disease incidence and severity. Evidence on interaction between temperature, pH and nitrogen levels on radial growth of the Fusarium spp. has been reported (Jones, 1924; Chen et al., 2013). Temperature has the ability of altering the expression of host defence mechanisms that favors resistance or susceptible. Banana, chickpea, carnation and lettuce had significant changes in their host defence mechanism from moderately resistant to susceptible when inoculated with their respective Fusarium spp. when the temperature raised above ~22–28°C. (Harling et al., 1988; Brake et al., 1995; Landa et al., 2006; Stuthman et al., 2007; Scott et al., 2010). Similarly pH of the soil has the ability to alter Fusarium spp. with respect to growth, spore adherence to plant roots ad appearance of wilt symptoms on host exposed to different temperatures (Chen et al., 2013; Gatch and du Toit, 2017).

Materials and methods Pathogen isolation and characterization

The pea plants showing typical wilting symptoms were collected from the main pea growing areas of Manipur. The infected plant roots were examined for vessel discoloration. The roots, showing the typical vessel discoloration, were rinsed with tap water and torn into 4–5 mm sections. The sections were then subjected to surface sterilization with 2% sodium hypochlorite solution for 1 min. The sections were then transferred to sterile distilled water to delineate traces of sodium hypochlorite. Washing with sterile distilled water was repeated three times to ensure tissue sections were free of sterilizing chemicals. The sterilized tissues were blotted with blotting paper to remove the excess water. Using sterile forceps, sections were plated onto water agar plates and incubated at 25 ± 1°C for 48 to 72 h. Colonies resembling Fusarium oxysporum were subcultured using the hyphal tip culture method to obtain the pure form of the isolate. The pure cultures were stored at −20°C for future use.

Morphological characterization of the isolates was done by inverting 5 mm disc of 7 days old culture on PDA plates. Sporulation studies carried out by taking 5 mm disc of the culture plate and placing the disc in 10 mL sterile distilled water. The spores were dislodged into water by continuous shaking. A drop of this spore suspension was placed on to a haemocytometer/ Neubauer Chamber and the spore count was taken from 5 squares at random. The spore count per ml was calculated by using a formula given by Pathak (1984).

Number of sporespermL=N∗1000X

where:

N = Total No. of spores counted/No. of squares,

X = Volume of mounting solution between the cover glass and above the squares counted.

The spore morphology and size was determined by placing a drop of spore suspension of each isolate onto a clean glass slide and covered with a cover slip. The slides were observed under 40X magnification of the microscope (Olympus BX41). Size of the sopre was determined by using ocular and stage micrometers with the help of Biowizard 4.2 image analyzer.

All isolates were pure and were subcultured onto PDA plates for 7 days. The 7-day-old cultures were then subcultured in PDB containing no agar to obtain a mycelial mat. The mycelial mat was collected after 7 days of incubation. Then the mycelial mats of each isolate were harvested for extraction of total genomic DNA using HiPure ATM Fungal DNA Purification Kit (Hi Media, India). The genomic DNA was extracted according to the manufacturer’s protocol. PCR amplifications were performed using primers ITS-1 (5 TCC GTA GGT GAA CCT GCC G 3) and ITS-4 (5 TCC TCC GCT TAT TGA TAT GC 3). The PCR products obtained by amplification with universal primers targeting the rRNA gene were sent to Xcelris Labs Ltd., Ahmadabad, Gujarat, India for sequencing using the same upstream and downstream primers. The sequenced data were analyzed in NCBI BLAST to identify the species of all isolates.

Optimization studies to evaluate the growth of different Fop isolates at different temperatures and different pH levels

The culture media PDA was prepared according to standard protocols. Seven different temperatures viz., 21, 23, 25, 27, 29, 31 and 33°C were used for optimization studies in which the growth of six Fop isolates was compared and analyzed. The culture media were then subjected to sterilization according to sterilization standards. The media were dispensed into petri dishes in an aseptic environment. The petri dishes were then inoculated with 5 mm pieces of 7 day old cultures of each isolate. The inoculated petri dishes were subjected to incubation in BOD at their respective temperatures. Growth of the isolates was noted after 7 days of inoculation. Three replicates were performed for each isolate at each temperature. Similarly, the PDA, culture medium was prepared following the standard protocols. Seven different pH values viz., 3, 4, 5, 6, 7, 8, and 9 were used for the optimization studies, in which the growth of six Fop isolates was compared and analyzed. The pH of the culture medium was changed by 0.1 N hydrochloric acid and 0.1 N sodium hydroxide with the digital pH meter (EuTech Instruments, pH700, Thermo Fisher, Scientific, United States). The culture medium was then subjected to sterilization according to sterilization standards. The medium was delivered to Petriplates under aseptic environment. The petri dishes were then inoculated with 5 mm pieces of 7 day old cultures of each isolate. The inoculated Petri dishes were subjected to incubation in BOD at a temperature of 25 + 1°C. The growth of the isolates was noted after 7 days of inoculation. Three replicates for each isolate at each pH were maintained.

Combination effect of temperature, pH and nitrogen dose levels on radial growth on six isolates of Fop

To study the combined effect of different pH and different temperature levels on the growth of Fop isolates, a pH range of 3–9, i.e., 3, 4, 5, 6, 7, 8, and 9, and a temperature range of 21–33°C, i.e., 21, 23, 25, 27, 29, 31, 33°C and nitrogen levels of 0–13 g, i.e., 0, 3.5, 7, 9, 11, and 13 g each were used in different combinations. The pH and temperature range was calibrated using the optimal pH and temperature, determined from previous studies. To assess radial growth study of each isolate, culture medium PDA was prepared according to standard protocols. The pH of the culture medium was changed by 0.1 N hydrochloric acid and 0.1 N sodium hydroxide with the digital pH meter used (EuTech Instruments, pH700, Thermo Fisher, Scientific, United States). The culture media of individual pH was prepared separately. The culture media were then subjected to sterilization according to sterilization standards. The media were dispensed into petri dishes in an aseptic environment. The petri dishes were then inoculated with 5 mm pieces of 7 day old cultures of each isolate. The inoculated petri dishes were subjected to incubation in BOD at specific temperatures, i.e., 21, 23, 25, 27, 29, 31, and 33°C. Growth of the isolates was noted after 7 days of inoculation. Three replicates were performed for each isolate at each pH and temperature. Similarly, the culture medium PDA was prepared, to which a nitrogen source (peptone) was added as per the requisite viz., peptone powder (RM001-Hi media) was weighed accordingly using a weighing balance (Precession weighing balance KERN 572) i.e., 3. 5, 7, 9, 11, and 13 g and was suspended in a litre of PDA. The prepared media was subjected for sterilization. The isolates were inoculated according to the protocol mentioned in the above step. Three replications were performed for each isolate independently.

Data analysis

Completely randomized design and a three-factorial randomized block design were used to analyze the data generated. For the sake of simplicity, the means of the raw data have been presented in the form of numbers. However, R Studio was used to analyze the data and create density plots. The significance of the differences between the means was determined by mean comparison tests.

Results Pathogen isolation and characterization

A total of 13 isolates were isolated from samples showing typical wilt symptoms collected from different locations of Manipur. Isolation was performed at the Department of Plant Pathology, College of Agriculture, Central Agricultural University, Imphal. The isolates were designated Fop-1, Fop-2, Fop-3, Fop-4, Fop-5, Fop-6, Fop-7, Fop-8, Fop-9, Fop-10, Fop-11, Fop – 12 or Fop-13. The details of the isolates collected are presented in Table 1.

Table 1. Location specificities of samples collected for isolation of the casual pathogen.

Morphological and molecular characterization of the isolates Radial growth, sporulation characterization of Fop isolates

Estimation of radial growth of the isolates was performed on PDA plates, maximum radial growth was record isolate Fop-1 being 16.50 mm (24 h inoculation), 30.00 mm (48 h inoculation), 44.17 mm (72 h inoculation) was found (inoculation), 60.50 mm (96 h inoculation) and 78.00 mm (120 h inoculation). After 144 h of inoculation, it covered the entire plate (90.00 mm), considering it a fast growing isolate compared to the other isolates. Isolate Fop-6 recorded the smallest growth with 33.33 mm (72 h inoculation), 45.33 mm (96 h inoculation), 55.67 mm (120 h inoculation), 66.33 mm (144 h inoculation) and 78.33 mm (144 h vaccination). Significant variation between isolates was observed at certain time intervals. The growth rate of all isolates is shown in Figure 1. The Fop isolates showed huge variation in mycelial color. The color pattern ranged from off-white, matte white, and white gradually changing with different pigments, such as white to light pink, white to light purple, light pink to dark pink, purple with white paint, and light brown. The topography of the isolates ranged from thick to thin with less or slightly cottony mycelial growth as shown in Table 2. The pigmentation on the back ranged from light purple to dark purple, from light pink to deep pink and red. The marginal mycelial growth pattern ranged from regular to irregular. Formation of zones and the texture of the isolates are also shown in Table 2.

Figure 1. Radial growth of Fop isolates at specific intervals of time.

Table 2. Cultural characters of Fop isolates.

Fop isolates can typically be characterized by their spores (Plates 1a,1b). Fop isolates tend to form micro, macro and chlamydospores. The characterization of Fop isolates for conidia is presented in Table 3. It lists the spore count, septum count, size and shape. All isolates showed obvious differences in spore number, septum color, size and shape.

PLATE 1. (A) Sporulation (Microconidia and Macroconidia) and their characterization of different Fop isolates (40X magnification). (B) Sporulation (Chamydospores) and their characterization of different Fop isolates (40X magnification).

Table 3. Sporulation and characterization of Fop isolates.

Molecular characterization of Fop isolates

Molecular identification of Fop isolates was performed by extraction of total genomic DNA, PCR amplification using the universal primers ITS1 and ITS4 primers. Approximately 564 nucleotides were amplified by PCR and confirmed by 1.2% agarose gel electrophoresis (Plate 2). The ITS region sequence of 13 isolates of Fusarium species has been submitted to the NCBI and the isolates have been assigned accession numbers, namely (MH578602), (MH578602), (MH578603), (MH578604), (MH578605), (MH578606), (MH578607), (MH578608), (MH578609), (MH578610), (MH578611), (MH578612), (MH578613) and (MH578614). The ITS sequence of the isolates was searched for their homologous sequences in publicly available databases and analyzed with the nucleotide BLAST software. Molecular Evolutionary Genetics Analysis (MEGA 7) software was used for phylogenetic analysis. The obtained nucleotide sequences were assembled and aligned using the ClustalW integrated in MEGA 7, and the phylogenetic tree was constructed using the neighbor-joining method. The evolutionary history was inferred using the neighbor-joining method performed in MEGA7 (Figure 2). The bootstrap consensus tree derived from 1,000 replicates was used to represent the evolutionary history of the Fop isolates from Manipur. Analysis included 19 nucleotide sequences using 13 isolates of F. oxysporum from Manipur and 6 isolates from a gene bank from Brazil, Algeria, Pakistan, the United States, Portugal and China and other parts of the world. The tree has two separate groups, one consisting of isolate Mnp31UL and the rest of the isolates were found in another group, showing that isolate Mnp31UL was the most diverse among all isolates compared. In the present study, isolates Mnp2KS and Mnp29YD, isolates Mnp37TO and Mnp30LD, and isolates Mnp32MC and Mnp24WL were each found to belong to one group, showing a highly related ancestry (Plates 3, 4).

PLATE 2. PCR amplification of ITS region of Fop isolates (L = 100 bp Ladder, 1–13 = Fop isolates).

Figure 2. Neighbor joining (NJ) phylogenetic tree illustrating the concatenated (16S rDNA) sequence based phylogenetic relationship of Fop isolates.

PLATE 3. Combination effect of temperature and pH on Fop isolates.

PLATE 4. Combination effect of temperature and Nitrogen levels on Fop isolates.

Optimization studies to evaluate the growth of different Fop isolates at different temperatures and different pH levels

The test to achieve optimized pH conditions for the growth of Fop isolates gave significant results. Fop isolates were grown on PDA medium whose pH was changed within the pH range tested against the growth of six Fop isolates; pH5 gave the best growth results when the radial growth of all isolates after 7 days of inoculation was a maximum of 9 cm and covered the entire plate. The smallest radial growth of all isolates was recorded at pH3. Radial growth of all isolates decreased and was limited to 2.5–3 cm in isolates, making a pH of 3 unsuitable. pH values of 4, 6, 7, 8, 9 showed growth of 7–9 cm, which varied between the isolates. The different growth of all Fop isolates with different pH values is shown in the interaction diagram Figure 3. The results obtained were consistent with the researchers findings (Attri et al., 2018; David et al., 2019; Somesh et al., 2019; Chaithra et al., 2020). The results obtained are supported by the results of Groenewald et al. (2006) who carried out in vitro studies on the radial growth of other Fusarium species and Formae special species. Fusarium oxysporum sp. cubense showed maximum radial growth at pH6 and 25°C, with minimal growth at pH4 using the same citrate/phosphate buffer medium.

Figure 3. Interaction plot of radial growth of six Fop isolates and their growth at various levels of pH.

Among all temperatures examined against the radial growth, a temperature of 25°C proved good and supported the growth of Fop isolates, with maximum growth being 8.8–9 cm. The lowest growth of all isolates was observed at 33°C, with the growth of all isolates dropping to 4 cm among isolates. The interaction diagram revealed that the growth of each isolate varied at different temperatures. The growth of Fop isolates at different temperatures is shown in the interaction diagram with different isolates and different temperatures, Figure 4. The influence of temperature on the Fop results has been compared with the results of David et al. (2019), Somesh et al. (2019), and Attri et al., 2018. Similar results for optimal fungal growth at a temperature of 25°C were reported for Fusarium oxysporum sp. lactucae, Fusarium oxysporum sp. fabae and Fusarium oxysporum sp. spinaciae (Naiki and Morita, 1983; Ivanovic et al., 1987; Scott et al., 2010).

Figure 4. Interaction plot of radial growth of six Fop isolates and their growth at various levels of Temperatures.

Combination effect of temperature and pH, temperature and nitrogen dose levels on radial growth on six isolates of Fop

The radial growth of Fop isolates resulted in a variable trend in response to combined changes in temperature and pH. All isolates showed increasing radial growth patterns with increasing temperature and pH. The increasing pattern was observed in all Fop isolates at a temperature of 21–27°C with a change in pH from 4 to 8. The mean radial growth of all isolates in relation to different temperatures ranged from 5.76 to 6.13 cm, with isolate Fop-3 having the highest proportion, followed by Fop-4, Fop-5, Fop-6, Fop-1, and Fop-2. The radial growth of the isolates at different temperatures ranged from 4.35 to 7.66 cm, with the highest mean radial growth of 7.66 cm of all isolates observed at 25°C. Isolate Fop-3 showed the strongest radial growth of all isolates in relation to different pH values and the smallest radial growth in Fop-1. The mean radial growth at different pH values for isolates, the strongest radial growth was observed at pH7. The growth of all isolates with regard to temperature and pH should be at a maximum at the combination of 25°C and pH7, respectively. Different importance of mean radial growth among isolates was observed. A wide variation in the radial growth of all isolates with changes in temperature and pH was observed. The density plot of the isolates at different temperatures and pH showed differences between isolates, temperature and pH. Growth densities of all isolates were concentrated at 5.5 to 7 cm. The density plot (Figure 5) also shows the variation in radial growth between isolates as the growth of the isolates is not equal. The results obtained are supported by David et al. (2019). The variation exhibited by the isolates at different temperatures and pH values was not limited to radial growth, but there were variations between isolates in terms of fungal growth pattern, color changes/pigmentation of the mycelium and substrate. Its changes can be visualized in plate: 3.

Figure 5. Density graph of radial growth of six Fop isolates with synergistic effect of Temperature and pH.

The radial growth of Fop isolates resulted in a variable trend in response to combined changes in temperature and nitrogen doses. All isolates showed increasing radial growth patterns with increasing temperature and nitrogen dose. The increasing pattern was observed in all Fop isolates at a temperature of 21–27°C with a change in nitrogen dose. The maximum mean radial growth (8.9 cm) of all isolates was observed at a temperature of 25°C and 27°C with nitrogen doses of 9, 11, and 13 g, respectively. The mean radial growth of all isolates with respect to temperature was 7.62 cm for isolate Fop-3, followed by Fop-4, Fop-5, Fop-2, and Fop-1. Maximum growth at different temperatures for isolates was observed at 25°C. The highest mean radial growth of the isolates for changing media supplementation with different nitrogen dose levels, the highest radial growth showed isolate Fop-3 and the lowest isolate Fop-1. The radial growth of Fop isolates was found to be maximal at a temperature and nitrogen dose of 25°C and 11 g. Difference in mean radial growth among isolates was observed. A large variation in the radial growth of all isolates with changes in temperature and nitrogen dose was also observed. The density diagram of the isolates at different temperatures and different nitrogen doses showed differences between the isolates, the temperature and the pH. Growth densities of all isolates were concentrated at 5 to 8 cm. The density plot (Figure 6) also shows the variation in radial growth between isolates as the growth of the isolates is not equal. The results obtained are supported by David et al. (2019). Notably, the variation was observed not only in radial growth but also in patterns of mycelial growth and pigmentation. Its changes can be visualized in plate: 4.

Figure 6. Density graph of radial growth of six Fop isolates with synergistic effect of Temperature and Nitrogen dose.

Discussions

The study provides evidence that all Fop isolates collected and isolated in different valley districts of Manipur showed mutual differences in morphology such as growth, mycelial properties, sporulation, size and shape. Colony character such as mycelial color (white, light pink, light purple, light brown), topography (thin, thick, cottony or non-cottony), texture (slightly fluffy to fluffy), border and pigmentation produced were recorded and all isolates detected showed large differences between them. The differences in cultural traits observed in Fop cultures have been important for the biology of fungi as they occur in nature because it is closely linked to the question of the physiological races of the pathogens. The results obtained in our investigation were consistent with the previous results of many workers (Singh et al., 2010; Anser and Srivastava, 2013; Ashwathi et al., 2017; Thaware et al., 2017). Differences in sporulation, size, shape, color and number of septations of macroconidia and microconidia, and chlamydospore diameter were observed among Fusarium isolates. These observations indicate that sporulation is important for the virulence of the isolates. The isolates that produced heavy sporulation were highly virulent, while isolates that produced low to moderate sporulation had very low pathogenicity. All morphological characters of Fusarium oxysporum obtained in the present investigation agree broadly with Booth (1971) and Nelson et al. (1990). A maximum degree of variability has previously been reported by former investigators in Fusarium oxysporum sp. pisi (Linford, 1928; Kraft, 1994). Awachar (2014) and Thaware et al. (2017) also described the size of microconidia, macroconidia and chlamydospores of Fusarium wilt of chickpeas. The current results confirm the reports of previous investigators who based their morphological studies on appropriate media for the growth and sporulation of Fusarium spp. (Kulkarni, 2006).

The characterization of the population structure of fungal pathogens is important for understanding the biology of the organism and for the development of disease control strategies (Malvick and Percich, 1998), as well as for molecular studies of individuals, which are one of the components of the population structure (Leung et al., 1993). However, the classification system based solely on morphology does not provide an accurate tool for identifying species. Therefore, a molecular approach is one of the most promising detection methods for species identification. In the present study, the morphological characterization of the isolates belonged to Fusarium spp. and their identity was confirmed using molecular methods. The primer combination ITS1 and ITS4 generated a fixed region length of 564 bp for 13 Fusarium oxysporum isolates. By comparing their sequences to the NCBI database using a blast search, a complete query with the highest match and coverage for Fusarium oxysporum was found. Chanu et al. (2018) worked on the molecular identification of Fusarium oxysporum f.sp. ciceris from chickpeas and confirmed that using the primer combination ITS1 and ITS4 resulted in a fixed region length of 564 bp. Devi et al. (2016) reported that the ITS region was successfully amplified from DNA of Fusarium oxysporum strains. Joshi et al. (2013) confirmed 39 isolates of Fusarium oxysporum using species-specific primers FOF1 and FOR1, which amplified the 340 bp DNA fragment. The Internal Transcribed Spacer (ITS) region is possibly the most frequently sequenced DNA region in fungi and is phylogenetically interpretable, i.e., the sequences are comparatively easy to align and large enough to provide potentially useful features for phylogenetic reconstruction. PCR amplification of the ITS region has become a popular choice for phylogenetic analysis of closely related species and populations. ITS1 and ITS4 of ribosomal RNA, which encodes DNA, have numerous advantages that represent an ideal region for a sequence for phylogenetic analysis. Its speed of development lends itself to study at both the specific and general levels. Therefore, the PCR-ITS method described in this study provides a simple and rapid procedure to differentiate Fusarium strains at the species level.

Optimization studies on six Fop isolates revealed that temperature and pH are key factors determining fungal growth. All Fop isolates were shown to show maximum growth at a temperature of 25°C and a neutral and slightly acidic medium. It has been observed that optimal temperatures and pH support the growth of the fungus for it to thrive and that the fission changes in the factors can alter the growth of the fungus. This was observed when lower and higher temperatures and higher pH were used. A reduction in the growth of the fungus with changes in its growth pattern and morphology was observed. These results also show that isolates found in the warmer regions tend to survive harsh conditions compared to isolates that thrive in temperate climates. The soils of Northeast India exhibit acidic conditions that favor the growth of the Fop. This in turn helps the fungus survive longer in the form of dormant structures. Our results on the influence of temperature and pH on fungal growth were consistent with the findings of several investigators studying Fusarium spp. All results indicated that the optimal temperature and pH for fungal growth were 25–30°C and 4–7°C, respectively (Groenewald et al., 2006; Wu et al., 2009; Gupta et al., 2010). However, temperature and pH may not be the only factors influencing the growth of the fungus. Other factors such as relative humidity and water potential may also have some impact on growth promotion (Cochrane, 1958; Nelson et al., 1990). The strongest radial growth tends to occur at 25°C. in Fusarium oxysporum sp. Betae isolates collected from temperate regions in the United States (Webb et al., 2015) and for Fusarium oxysporum sp. Psidii and F. solani isolates collected from subtropical regions in India (Gupta et al., 2010).

The merging effect of temperature, pH, temperature and nitrogen content shows that Fop isolates collected from different sites in the valley districts of Manipur tend to have different growth rates under different conditions of temperature, pH and nitrogen content base to achieve. Total Fop isolates were observed to exhibit white, cottony, fluffy mycelial growth as the nitrogen content of the basal medium increased, suggesting that field nitrogen concentrations support vegetative growth of the disease-causing pathogens. It was observed that the fungal isolates changed their morphology with changes in temperature, pH and nitrogen content (Panels 3 and 4). From this it can be understood that the change in climatic conditions causes mutations or genetic changes in pathogenic fungi. The climate-related changes of the fungus may pose a serious threat to the living world. As pathogens become more virulent under the influence of these changing climate scenarios, new epidemics can arise that can starve people and animals and cause devastating problems in the human world. The higher temperatures and pH levels and indiscriminate fertilization in the fields may not have an immediate impact but may pose future challenges that may be difficult to manage.

Future aspects

Since the results of inter-isolate variation with changes in temperature, pH and nitrogen doses are confirmed at the morphological level, these should also be evaluated at the genetic level to determine the degree of inter-isolate variation when there is a change in atmospheric conditions. The same should be evaluated under field conditions involving the host to determine the effect of the pathogenic isolates.

Data availability statement

The original contributions presented in the study are included in the article/supplementary material, further inquiries can be directed to the corresponding author.

Author contributions

All authors listed have made a substantial, direct, and intellectual contribution to the work and approved it for publication.

Funding

The authors would like to express their sincere gratitude to the College of Agriculture, Central Agricultural University, Imphal, India for financial support to keep the research running smoothly.

Acknowledgments

The authors would like to express their sincere gratitude to all the individuals involved in this research for sharing their valuable experiences and suggestions on how to carry out the research work. We also thank the Central Agricultural University, Imphal, India for their support.

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

References

Anser, M., and Srivastava, M. (2013). Morphological variability and pathogenic reactions of fusarium oxysporum f.sp. ciceri isolates to cultivars of chickpea. Ann. Pl. Prot. Sci. 21, 345–348.

Google Scholar

Armstrong, G. M., and Armstrong, J. K. (1974). Races of Fusarium oxysporum f.sp. pisi causal agents of wilt of pea. Phytopathol 64, 849–857.

Google Scholar

Ashwathi, S., Ushamalini, C., Parthasarathy, S., and Nakkeeran, S. (2017). Morphological and molecular characterization of fusarium spp. associated with vascular wilt of coriander in India. J. Pharmaco. Phytochem 6, 1055–1059.

Google Scholar

Aslam, S., Ghazanfar, M. U., Munir, N., and Hamid, M. I. (2019). Managing fusarium wilt of pea by utilizing different application methods of fungicides. Pakistan J. Phytopathol. 31, 81–88. doi: 10.33866/phytopathol.031.01.0482

CrossRef Full Text | Google Scholar

Attri, K., Sharma, M., and Gupta, S. K. (2018). Influence of edaphic factors on fusarium wilt of bell pepper. Int. J. Bio-Reso. 9, 606–610. doi: 10.23910/IJBSM/2018.9.5.1904

CrossRef Full Text | Google Scholar

Awachar, M.K. (2014). Studies on morphological variability of fusarium oxysporum f.sp. ciceris causing wilt of chickpea. M.Sc. (Agri.) thesis, MPKV, Rahuri (India).