1. Derrien, T, Johnson, R, Bussotti, G, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 2012;22(9):1775-1789. PMID: 22955988; PMCID: PMC3431493. 10.1101/gr.132159.111.
Google Scholar | Crossref | Medline | ISI2. Kopp, F, Mendell, JT. Functional classification and experimental dissection of long noncoding RNAs. Cell. 2018;172(3):393-407. PMID: 29373828; PMCID: PMC5978744. 10.1016/j.cell.2018.01.011.
Google Scholar | Crossref | Medline3. Volders, PJ, Helsens, K, Wang, X, et al. LNCipedia: A database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Res; 2013;41:D246-D251. PMCID: PMC3531107; PMID: 23042674. Epub 2012 Oct 5. 10.1093/nar/gks915.
Google Scholar | Crossref | Medline | ISI4. Raithel, S, Johnson, L, Galliart, M, et al. Inferential considerations for low-count RNA-seq transcripts: A case study on the dominant prairie grass Andropogon gerardii. BMC Genom. 2016;17:140. PMID: 26919855; PMCID: PMC4769568. doi:10.1186/s12864-016-2442-7.
Google Scholar | Crossref | Medline5. Qi, Z, Guo, S, Li, C, et al. Integrative analysis for the roles of lncRNAs in the immune responses of mouse PBMC exposed to low-dose ionizing radiation. Dose Response. 2020 18(1):1559325820913800. PMID: 32269503; PMCID: PMC7093697.doi:10.1177/1559325820913800.
Google Scholar | SAGE Journals | ISI6. Assefa, AT, De Paepe, K, Everaert, C, Mestdagh, P, Thas, O, Vandesompele, J. Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data. Genome Biol. 2018 19(1):96. PMID:30041657; PMCID: PMC6058388.doi:10.1186/s13059-018-1466-5.
Google Scholar | Crossref | Medline7. Law, CW, Alhamdoosh, M, Su, S, et al. RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR. ISCB Comm J; 2016, 5:1408. PMID: 27441086; PMCID: PMC4937821.doi:10.12688/f1000research.9005.3.
Google Scholar | Crossref8. Ritchie, ME, Phipson, B, Wu, D, et al. Limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;43(7):e47. PMID: 25605792; PMCID: PMC4402510. Epub 2015 Jan 20. doi:10.1093/nar/gkv007.
Google Scholar | Crossref | Medline | ISI