Hu Q, Xiao S, Guan Q, Tu L, Sheng F, Du X, Zhang X. The laccase gene GhLac1 modulates fiber initiation and elongation by coordinating jasmonic acid and flavonoid metabolism. Crop J. 2020;8(4):522–33.

Article  Google Scholar 

Qin Y-M, Zhu Y-X. How cotton fibers elongate: a tale of linear cell-growth mode. Curr Opin Plant Biol. 2011;14(1):106–11.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Graves D, Stewart J. Chronology of the differentiation of cotton (Gossypium hirsutum L.) fiber cells. Planta. 1988;175(2):254–8.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Lee JJ, Woodward AW, Chen ZJ. Gene expression changes and early events in cotton fibre development. Ann Bot. 2007;100(7):1391–401.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Ruan YL. Rapid cell expansion and cellulose synthesis regulated by plasmodesmata and sugar: insights from the single-celled cotton fibre. Funct Plant Biol FPB. 2007;34(1):1–10.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Wang L, Wang G, Long L, Altunok S, Feng Z, Wang D, Khawar KM, Mujtaba M. Understanding the role of phytohormones in cotton fiber development through omic approaches; recent advances and future directions. Int J Biol Macromol. 2020;163:1301–13.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Szymanski DB, Lloyd AM, Marks MD. Progress in the molecular genetic analysis of trichome initiation and morphogenesis in Arabidopsis. Trends Plant Sci. 2000;5(5):214–9.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Machado A, Wu Y, Yang Y, Llewellyn DJ, Dennis ES. The MYB transcription factor GhMYB25 regulates early fibre and trichome development. Plant J Cell Mol Biol. 2009;59(1):52–62.

CAS  Article  Google Scholar 

Walford SA, Wu Y, Llewellyn DJ, Dennis ES. GhMYB25-like: a key factor in early cotton fibre development. Plant J Cell Mol Biol. 2011;65(5):785–97.

CAS  Article  Google Scholar 

Zhang T, Hu Y, Jiang W, Fang L, Guan X, Chen J, Zhang J, Saski CA, Scheffler BE, Stelly DM, et al. Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. Nat Biotechnol. 2015;33(5):531–7.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Wan Q, Guan X, Yang N, Wu H, Pan M, Liu B, Fang L, Yang S, Hu Y, Ye W, et al. Small interfering RNAs from bidirectional transcripts of GhMML3_A12 regulate cotton fiber development. New Phytol. 2016;210(4):1298–310.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Wu H, Tian Y, Wan Q, Fang L, Guan X, Chen J, Hu Y, Ye W, Zhang H, Guo W, et al. Genetics and evolution of MIXTA genes regulating cotton lint fiber development. New Phytol. 2018;217(2):883–95.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Stracke R, Werber M, Weisshaar B. The R2R3-MYB gene family in Arabidopsis thaliana. Curr Opin Plant Biol. 2001;4(5):447–56.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Shangguan XX, Yang CQ, Zhang XF, Wang LJ. Functional characterization of a basic helix–loop–helix (bHLH) transcription factor GhDEL65 from cotton (Gossypium hirsutum). Physiol Plant. 2016;158(2):200–12.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Guan XY, Li QJ, Shan CM, Wang S, Mao YB, Wang LJ, Chen XY. The HD-Zip IV gene GaHOX1 from cotton is a functional homologue of the Arabidopsis GLABRA2. Physiol Plant. 2008;134(1):174–82.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Shan CM, Shangguan XX, Zhao B, Zhang XF, Chao LM, Yang CQ, Wang LJ, Zhu HY, Zeng YD, Guo WZ, et al. Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3. Nat Commun. 2014;5:5519.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Shi YH, Zhu SW, Mao XZ, Feng JX, Qin YM, Zhang L, Cheng J, Wei LP, Wang ZY, Zhu YX. Transcriptome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fiber cell elongation. Plant Cell. 2006;18(3):651–64.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Lv L, Zuo D, Wang X, Cheng H, Ma Z. Genome-wide identification of the expansin gene family reveals that expansin genes are involved in fibre cell growth in cotton. BMC Plant Biol. 2020;20:223.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Mukhtar A, Ali SA, Sidra A, Ayesha L, Ud DS, Ma F, Rao AQ, Bilal SM, Tayyab H, Wang X. Sucrose synthase genes: a way forward for cotton fiber improvement. Biologia. 2018;73:1–11.

Article  Google Scholar 

McQueen-Mason S. Two endogenous proteins that induce cell wall extension in plants. Plant Cell. 1992;4(11):1425–33.

CAS  PubMed  PubMed Central  Google Scholar 

Sampedro J, Cosgrove DJ. The expansin superfamily. Genome Biol. 2005;6(12):242.

PubMed  PubMed Central  Article  CAS  Google Scholar 

Harmer S, Orford S, Timmis J. Characterisation of six alpha-expansin genes in Gossypium hirsutum (upland cotton). Mol Genet Genom. 2002;268(1):1–9.

CAS  Article  Google Scholar 

Li Y, Tu L, Pettolino FA, Ji S, Hao J, Yuan D, Deng F, Tan J, Hu H, Wang Q, et al. GbEXPATR, a species-specific expansin, enhances cotton fibre elongation through cell wall restructuring. Plant Biotechnol J. 2016;14(3):951–63.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Bajwa KS, Shahid AA, Rao AQ, Bashir A, Aftab A, Husnain T. Stable transformation and expression of GhEXPA8 fiber expansin gene to improve fiber length and micronaire value in cotton. Front Plant Sci. 2015;6:838.

PubMed  PubMed Central  Article  Google Scholar 

Xu B, Gou JY, Li FG, Shangguan XX, Zhao B, Yang CQ, Wang LJ, Yuan S, Liu CJ, Chen XY. A cotton BURP domain protein interacts with alpha-expansin and their co-expression promotes plant growth and fruit production. Mol Plant. 2013;6(3):945–58.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Wang L, Liu N, Wang T, Li J, Wen T, Yang X, Lindsey K, Zhang X. The GhmiR157a-GhSPL10 regulatory module controls initial cellular dedifferentiation and callus proliferation in cotton by modulating ethylene-mediated flavonoid biosynthesis. J Exp Bot. 2018;69(5):1081–93.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9(4):357–9.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods. 2015;12(4):357–60.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Li B, Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinform. 2011;12:323.

CAS  Article  Google Scholar 

Wang L, Feng Z, Wang X, Zhang X. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics. 2010;26(1):136–8.

PubMed  Article  CAS  PubMed Central  Google Scholar 

Sturn A, Quackenbush J, Trajanoski Z. Genesis: cluster analysis of microarray data. Bioinformatics. 2002;18(1):207–8.

CAS  PubMed  Article  PubMed Central  Google Scholar 

Matilla AJ, Carrillo-Barral N, Rodríguez-Gacio M. An Update on the role of NCED and CYP707A ABA metabolism genes in seed dormancy induction and the response to after-ripening and nitrate. J Plant Growth Regul. 2015;34(2):274–93.

CAS  Article  Google Scholar 

Davis LA, Addicott FT. Abscisic acid: correlations with abscission and with development in the cotton fruit. Plant Physiol. 1972;49(4):644–8.

CAS  PubMed  PubMed Central  Article  Google Scholar 

Xiao G, Zhao P, Zhang Y. A pivotal role of hormones in regulating cotton fiber development. Front Plant Sci. 2019;10:87.

PubMed  PubMed Central  Article  Google Scholar 

Shibuya N. Oligosaccharide signalling for defence responses in plant. Physiol Mol Plant Pathol. 2001;59:223–33.

CAS  Article  Google Scholar 

Gordon M, Arasah A, Stern K, Kim HJ, Ratnayaka H. Photosynthesis and growth characteristics of cotton immature fiber mutant (im) in comparison with isogenic wild type (TM-1). In: Plant biology 2016. American Society of Plant Biologists; 2016.

Joshi PC, Wadhwani AM, Johri BM. Morphological and embryological studies of Gossypium L. Proc Nat Acad Sci India. 1967;33:786–98.

Google Scholar 

Stewart JM. Fiber initiation on the cotton ovule (Gossypium hirsutum). Am J Bot. 1975;62(7):723.

Article  Google Scholar 

Basra AS, Malik CP. Development of the cotton fiber. Int Rev Cytol. 1984;89(6):65–113.

CAS