Gould AL, Zhang V, Lamberti L, Jones EW, Obadia B, Korasidis N, Gavryushkin A, Carlson JM, Beerenwinkel N, Ludington WB. Microbiome interactions shape host fitness. Proc Natl Acad Sci U S A. 2018;115(51):E11951–60.
Article CAS PubMed PubMed Central Google Scholar
Malard F, Dore J, Gaugler B, Mohty M. Introduction to host microbiome symbiosis in health and disease. Mucosal Immunol. 2021;14(3):547–54.
Article CAS PubMed Google Scholar
Arun D, Midhun SJ: Microbiome of fish. In: Recent Advances in Aquaculture Microbial Technology. 2023: 15–33.
Merrifield DL, Rodiles A: The fish microbiome and its interactions with mucosal tissues. In: Mucosal Health in Aquaculture. 2015: 273–295.
de Bruijn I, Liu Y, Wiegertjes GF, Raaijmakers JM. Exploring fish microbial communities to mitigate emerging diseases in aquaculture. FEMS Microbiol Ecol. 2018;94(1):fix161.
Luan Y, Li M, Zhou W, Yao Y, Yang Y, Zhang Z, Ringø E, Erik Olsen R, Liu Clarke J, Xie S, et al. The fish microbiota: research progress and potential applications. Engineering. 2023;29(10):137–46.
Kim PS, Shin NR, Lee JB, Kim MS, Whon TW, Hyun DW, Yun JH, Jung MJ, Kim JY, Bae JW. Host habitat is the major determinant of the gut microbiome of fish. Microbiome. 2021;9(1):166.
Article CAS PubMed PubMed Central Google Scholar
Chiarello M, Auguet J-C, Bettarel Y, Bouvier C, Claverie T, Graham NAJ, Rieuvilleneuve F, Sucré E, Bouvier T, Villéger S. Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet. Microbiome. 2018;6(1):147.
Article PubMed PubMed Central Google Scholar
François-Étienne S, Nicolas L, Eric N, Jaqueline C, Pierre-Luc M, Sidki B, Aleicia H, Danilo B, Luis VA, Nicolas D. Important role of endogenous microbial symbionts of fish gills in the challenging but highly biodiverse Amazonian blackwaters. Nat Commun. 2023;14(1):3903.
Article PubMed PubMed Central Google Scholar
Guerreiro I, Enes P, Rodiles A, Merrifield D, Oliva-Teles A. Effects of rearing temperature and dietary short-chain fructooligosaccharides supplementation on allochthonous gut microbiota, digestive enzymes activities and intestine health of turbot (Scophthalmus maximus L.) juveniles. Aquac Nutr. 2016;22(3):631–42.
Dehler CE, Secombes CJ, Martin SAM. Seawater transfer alters the intestinal microbiota profiles of Atlantic salmon (Salmo salar L.). Sci Rep. 2017;7(1):13877.
Article PubMed PubMed Central Google Scholar
Yu C, Zhang C, Salisu A, Wang Y. Comparison of the intestinal bacteria between black seabass Centropristis striata reared in recirculating aquaculture system and net pen. Curr Microbiol. 2022;79(4):109.
Article CAS PubMed Google Scholar
Diwan A, Harke SN, Panche A: Impact of Climate Change on the Gut Microbiome of Fish and Shellfish. In: Microbiome of Finfish and Shellfish. Edited by Diwan A, Harke SN, Panche A. Singapore: Springer Nature Singapore; 2023: 255–294.
Salinas I. The mucosal immune system of teleost Fish. Biology. 2015;4(3):525–39.
Article CAS PubMed PubMed Central Google Scholar
Guivier E, Pech N, Chappaz R, Gilles A. Microbiota associated with the skin, gills, and gut of the fish Parachondrostoma toxostoma from the Rhône basin. Freshwater Biol. 2019;65(3):446–59.
Zhang Z, Li D, Xu W, Tang R, Li L. Microbiome of co-cultured fish exhibits host selection and niche differentiation at the organ scale. Front Microbiol. 2019;10:2576.
Article PubMed PubMed Central Google Scholar
Minich JJ, Harer A, Vechinski J, Frable BW, Skelton ZR, Kunselman E, Shane MA, Perry DS, Gonzalez A, McDonald D, et al. Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species. Nat Commun. 2022;13(1):6978.
Article CAS PubMed PubMed Central Google Scholar
Lowrey L, Woodhams DC, Tacchi L, Salinas I, Goodrich-Blair H. Topographical mapping of the rainbow trout (Oncorhynchus mykiss) microbiome reveals a diverse bacterial community with antifungal properties in the skin. Appl Environ Microbiol. 2015;81(19):6915–25.
Article CAS PubMed PubMed Central Google Scholar
Guivier E, Martin J-F, Pech N, Ungaro A, Chappaz R, Gilles A. Microbiota diversity within and between the tissues of two wild interbreeding species. Microb Ecol. 2017;75(3):799–810.
Wang AR, Ran C, Ringø E, Zhou ZG. Progress in fish gastrointestinal microbiota research. Rev Aquac. 2018;10(3):626–40.
Ou W, Yu G, Zhang Y, Mai K. Recent progress in the understanding of the gut microbiota of marine fishes. Mar Life Sci Technol. 2021;3(4):434–48.
Article CAS PubMed PubMed Central Google Scholar
Yukgehnaish K, Kumar P, Sivachandran P, Marimuthu K, Arshad A, Paray BA, Arockiaraj J. Gut microbiota metagenomics in aquaculture: factors influencing gut microbiome and its physiological role in fish. Rev Aquac. 2020;12:1903–27.
Smith CC, Snowberg LK, Gregory Caporaso J, Knight R, Bolnick DI. Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota. ISME J. 2015;9(11):2515–26.
Article CAS PubMed PubMed Central Google Scholar
Sylvain FE, Holland A, Bouslama S, Audet-Gilbert E, Lavoie C, Val AL, Derome N. Fish skin and gut microbiomes show contrasting signatures of host species and habitat. Appl Environ Microbiol. 2020;86(16):e00789-e720.
Article CAS PubMed PubMed Central Google Scholar
Chen S, Su Y, Hong W: Aquaculture of the Large Yellow Croaker. In: Aquaculture in China. 2018: 297–308.
Agriculture MO. China Fishery Statistical Yearbook 2023. Beijing, China: China Agriculture Press; 2023.
Zhu J, Li H, Jing ZZ, Zheng W, Luo YR, Chen SX, Guo F. Robust host source tracking building on the divergent and non-stochastic assembly of gut microbiomes in wild and farmed large yellow croaker. Microbiome. 2022;10(1):18.
Article CAS PubMed PubMed Central Google Scholar
Zhang C, Zheng X, Ren X, Li Y, Wang Y. Bacterial diversity in gut of large yellow croaker Larimichthys crocea and black sea bream Sparus macrocephalus reared in an inshore net pen. Fisheries Sci. 2019;85(6):1027–36.
Pratte ZA, Besson M, Hollman RD, Stewart FJ. The gills of reef fish support a distinct microbiome influenced by host-specific factors. Appl Environ Microbiol. 2018;84(9):e00063-e00118.
Article CAS PubMed PubMed Central Google Scholar
Sadeghi J, Chaganti SR, Johnson TB, Heath DD. Host species and habitat shape fish-associated bacterial communities: phylosymbiosis between fish and their microbiome. Microbiome. 2023;11(1):258.
Article CAS PubMed PubMed Central Google Scholar
Sehnal L, Brammer-Robbins E, Wormington AM, Blaha L, Bisesi J, Larkin I, Martyniuk CJ, Simonin M, Adamovsky O. Microbiome composition and function in aquatic vertebrates: small organisms making big impacts on aquatic animal health. Front Microbiol. 2021;12:567408.
Article PubMed PubMed Central Google Scholar
Bowman JP: The Genus Psychrobacter. In: The Prokaryotes: A Handbook on the Biology of Bacteria Volume 6: Proteobacteria: Gamma Subclass. Edited by Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E. New York, NY: Springer New York; 2006: 920–930.
Elsheshtawy A, Clokie BGJ, Albalat A, Beveridge A, Hamza A, Ibrahim A, MacKenzie S. Characterization of external mucosal microbiomes of nile tilapia and grey mullet co-cultured in semi-intensive pond systems. Front Microbiol. 2021;12:773860.
Article PubMed PubMed Central Google Scholar
Rosado D, Xavier R, Cable J, Severino R, Tarroso P, Perez-Losada M. Longitudinal sampling of external mucosae in farmed European seabass reveals the impact of water temperature on bacterial dynamics. ISME Commun. 2021;1(1):28.
Article PubMed PubMed Central Google Scholar
Ghosh SK, Wong MKS, Hyodo S, Goto S, Hamasaki K. Temperature modulation alters the gut and skin microbial profiles of chum salmon (Oncorhynchus keta). Front Mar Sci. 2022;9:1027621.
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