Zhang, Y. & Gross, C. A. Cold shock response in bacteria. Annu. Rev. Genet. 55, 377–400 (2021).
Article CAS PubMed Google Scholar
Richter, K., Haslbeck, M. & Buchner, J. The heat shock response: life on the verge of death. Mol. Cell 40, 253–266 (2010).
Article CAS PubMed Google Scholar
Barber, M. A. The rate of multiplication of Bacillus coli at different temperatures. J. Infect. Dis. 5, 379–400 (1908).
Mohr, P. W. & Krawiec, S. Temperature characteristics and Arrhenius plots for nominal psychrophiles, mesophiles and thermophiles. J. Gen. Microbiol. 121, 311–317 (1980).
Herendeen, S. L., VanBogelen, R. A. & Neidhardt, F. C. Levels of major proteins of Escherichia coli during growth at different temperatures. J. Bacteriol. 139, 185–194 (1979).
Article CAS PubMed PubMed Central Google Scholar
Knapp, B. D. & Huang, K. C. The effects of temperature on cellular physiology. Annu. Rev. Biophys. 51, 499–526 (2022).
Article CAS PubMed Google Scholar
Chen, K. et al. Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation. Proc. Natl Acad. Sci. USA 114, 11548–11553 (2017).
Article CAS PubMed PubMed Central Google Scholar
Phillips, R., Kondev, J. & Theriot, J. Physical Biology of the Cell (Garland Science, 2009).
Hinshelwood, C. N. On the chemical kinetics of autosynthetic systems. J. Chem. Soc. (Resumed) 1952, 745–755 (1952).
Iyer-Biswas, S. et al. Scaling laws governing stochastic growth and division of single bacterial cells. Proc. Natl Acad. Sci. USA 111, 15912–15917 (2014).
Article CAS PubMed PubMed Central Google Scholar
Elias, M., Wieczorek, G., Rosenne, S. & Tawfik, D. S. The universality of enzymatic rate-temperature dependency. Trends Biochem. Sci. 39, 1–7 (2014).
Article CAS PubMed Google Scholar
Dill, K. A., Ghosh, K. & Schmit, J. D. Physical limits of cells and proteomes. Proc. Natl Acad. Sci. USA 108, 17876–17882 (2011).
Article CAS PubMed PubMed Central Google Scholar
Lemaux, P. G., Herendeen, S. L., Bloch, P. L. & Neidhardt, F. C. Transient rates of synthesis of individual polypeptides in E. coli following temperature shifts. Cell 13, 427–434 (1978).
Article CAS PubMed Google Scholar
Gadgil, M., Kapur, V. & Hu, W. S. Transcriptional response of Escherichia coli to temperature shift. Biotechnol. Prog. 21, 689–699 (2005).
Article CAS PubMed Google Scholar
Tagkopoulos, I., Liu, Y. C. & Tavazoie, S. Predictive behavior within microbial genetic networks. Science 320, 1313–1317 (2008).
Article CAS PubMed PubMed Central Google Scholar
Zhou, Y. N., Kusukawa, N., Erickson, J. W., Gross, C. A. & Yura, T. Isolation and characterization of Escherichia coli mutants that lack the heat shock sigma factor sigma 32. J. Bacteriol. 170, 3640–3649 (1988).
Article CAS PubMed PubMed Central Google Scholar
Chohji, T., Sawada, T. & Kuno, S. Effects of temperature shift on growth rate of Escherichia coli BB at lower glucose concentration. Biotechnol. Bioeng. 25, 2991–3003 (1983).
Article CAS PubMed Google Scholar
Sinensky, M. Homeoviscous adaptation—a homeostatic process that regulates the viscosity of membrane lipids in Escherichia coli. Proc. Natl Acad. Sci. USA 71, 522–525 (1974).
Article CAS PubMed PubMed Central Google Scholar
Budin, I. et al. Viscous control of cellular respiration by membrane lipid composition. Science 362, 1186–1189 (2018).
Article CAS PubMed Google Scholar
Scott, M., Klumpp, S., Mateescu, E. M. & Hwa, T. Emergence of robust growth laws from optimal regulation of ribosome synthesis. Mol. Syst. Biol. 10, 747 (2014).
Article PubMed PubMed Central Google Scholar
Bremer, H. & Dennis, P. P. Modulation of chemical composition and other parameters of the cell at different exponential growth rates. EcoSal Plus https://doi.org/10.1128/ecosal.5.2.3 (2008).
Belliveau, N. M. et al. Fundamental limits on the rate of bacterial growth and their influence on proteomic composition. Cell Syst. 12, 924–944.e2 (2021).
Article CAS PubMed PubMed Central Google Scholar
Zaritsky, A. Effects of growth temperature on ribosomes and other physiological properties of Escherichia coli. J. Bacteriol. 151, 485–486 (1982).
Article CAS PubMed PubMed Central Google Scholar
Ram, J. L., Ritchie, R. P., Fang, J., Gonzales, F. S. & Selegean, J. P. Sequence-based source tracking of Escherichia coli based on genetic diversity of beta-glucuronidase. J. Environ. Qual. 33, 1024–1032 (2004).
Article CAS PubMed Google Scholar
Ram, J. L. et al. Identification of pets and raccoons as sources of bacterial contamination of urban storm sewers using a sequence-based bacterial source tracking method. Water Res. 41, 3605–3614 (2007).
Article CAS PubMed Google Scholar
Arcus, V. L. & Mulholland, A. J. Temperature, dynamics, and enzyme-catalyzed reaction rates. Annu. Rev. Biophys. 49, 163–180 (2020).
Article CAS PubMed Google Scholar
Nguyen, V. et al. Evolutionary drivers of thermoadaptation in enzyme catalysis. Science 355, 289–294 (2017).
Article CAS PubMed Google Scholar
Atolia, E. et al. Environmental and physiological factors affecting high-throughput measurements of bacterial growth. mBio 11, e01378-20 (2020).
Article PubMed PubMed Central Google Scholar
Knapp, B. D., Zhu, L. & Huang, K. C. SiCTeC: an inexpensive, easily assembled Peltier device for rapid temperature shifting during single-cell imaging. PLoS Biol. 18, e3000786 (2020).
Article CAS PubMed PubMed Central Google Scholar
Cashel, M. & Gallant, J. Two compounds implicated in the function of the RC gene of Escherichia coli. Nature 221, 838–841 (1969).
Article CAS PubMed Google Scholar
Irving, S. E., Choudhury, N. R. & Corrigan, R. M. The stringent response and physiological roles of (pp)pGpp in bacteria. Nat. Rev. Microbiol. 19, 256–271 (2021).
Article CAS PubMed Google Scholar
Mackow, E. R. & Chang, F. N. Correlation between RNA synthesis and ppGpp content in Escherichia coli during temperature shifts. Mol. Gen. Genet. 192, 5–9 (1983).
Article CAS PubMed Google Scholar
Scott, M., Gunderson, C. W., Mateescu, E. M., Zhang, Z. & Hwa, T. Interdependence of cell growth and gene expression: origins and consequences. Science 330, 1099–1102 (2010).
Article CAS PubMed Google Scholar
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