Structural studies of β-glucosidase from the thermophilic bacterium Caldicellulosiruptor saccharolyticus

References

First citationAgirre, J., Atanasova, M., Bagdonas, H., Ballard, C. B., Baslé, A., Beilsten-Edmands, J., Borges, R. J., Brown, D. G., Burgos-Mármol, J. J., Berrisford, J. M., Bond, P. S., Caballero, I., Catapano, L., Chojnowski, G., Cook, A. G., Cowtan, K. D., Croll, T. I., Debreczeni, J. É., Devenish, N. E., Dodson, E. J., Drevon, T. R., Emsley, P., Evans, G., Evans, P. R., Fando, M., Foadi, J., Fuentes-Montero, L., Garman, E. F., Gerstel, M., Gildea, R. J., Hatti, K., Hekkelman, M. L., Heuser, P., Hoh, S. W., Hough, M. A., Jenkins, H. T., Jiménez, E., Joosten, R. P., Keegan, R. M., Keep, N., Krissinel, E. B., Kolenko, P., Kovalevskiy, O., Lamzin, V. S., Lawson, D. M., Lebedev, A. A., Leslie, A. G. W., Lohkamp, B., Long, F., Malý, M., McCoy, A. J., McNicholas, S. J., Medina, A., Millán, C., Murray, J. W., Murshudov, G. N., Nicholls, R. A., Noble, M. E. M., Oeffner, R., Pannu, N. S., Parkhurst, J. M., Pearce, N., Pereira, J., Perrakis, A., Powell, H. R., Read, R. J., Rigden, D. J., Rochira, W., Sammito, M., Sánchez Rodríguez, F., Sheldrick, G. M., Shelley, K. L., Simkovic, F., Simpkin, A. J., Skubak, P., Sobolev, E., Steiner, R. A., Stevenson, K., Tews, I., Thomas, J. M. H., Thorn, A., Valls, J. T., Uski, V., Usón, I., Vagin, A., Velankar, S., Vollmar, M., Walden, H., Waterman, D., Wilson, K. S., Winn, M. D., Winter, G., Wojdyr, M. & Yamashita, K. (2023). Acta Cryst. D79, 449–461.  Web of Science CrossRef IUCr Journals Google Scholar
First citationAltschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Nucleic Acids Res. 25, 3389–3402.  CrossRef CAS PubMed Web of Science Google Scholar
First citationArmstrong, D. R., Berrisford, J. M., Conroy, M. J., Gutmanas, A., Anyango, S., Choudhary, P., Clark, A. R., Dana, J. M., Deshpande, M., Dunlop, R., Gane, P., Gáborová, R., Gupta, D., Haslam, P., Koča, J., Mak, L., Mir, S., Mukhopadhyay, A., Nadzirin, N., Nair, S., Paysan-Lafosse, T., Pravda, L., Sehnal, D., Salih, O., Smart, O., Tolchard, J., Varadi, M., Svobodova-Vařeková, R., Zaki, H., Kleywegt, G. J. & Velankar, S. (2019). Nucleic Acids Res. 48, D335–D343.  Google Scholar
First citationChen, A., Wang, D., Ji, R., Li, J., Gu, S., Tang, R. & Ji, C. (2021). Front. Microbiol. 12, 723678.  CrossRef PubMed Google Scholar
First citationDrula, E., Garron, M. L., Dogan, S., Lombard, V., Henrissat, B. & Terrapon, N. (2022). Nucleic Acids Res. 50, D571–D577.  Web of Science CrossRef CAS PubMed Google Scholar
First citationEmsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486–501.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationEvans, P. R. (2011). Acta Cryst. D67, 282–292.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationEvans, P. R. & Murshudov, G. N. (2013). Acta Cryst. D69, 1204–1214.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationGalanopoulou, A. P., Moraïs, S., Georgoulis, A., Morag, E., Bayer, E. A. & Hatzinikolaou, D. G. (2016). Appl. Microbiol. Biotechnol. 100, 8731–8743.  CrossRef CAS PubMed Google Scholar
First citationHakulinen, N., Paavilainen, S., Korpela, T. & Rouvinen, J. (2000). J. Struct. Biol. 129, 69–79.  Web of Science CrossRef PubMed CAS Google Scholar
First citationHassan, N., Nguyen, T.-H., Intanon, M., Kori, L. D., Patel, B. K. C., Haltrich, D., Divne, C. & Tan, T. C. (2015). Appl. Microbiol. Biotechnol. 99, 1731–1744.  CrossRef CAS PubMed Google Scholar
First citationHelliwell, J. R. (2023). Curr. Res. Struct. Biol. 6, 100111.  Web of Science CrossRef PubMed Google Scholar
First citationHenrissat, B. & Bairoch, A. (1993). Biochem. J. 293, 781–788.  CrossRef CAS PubMed Web of Science Google Scholar
First citationHolm, L., Laiho, A., Törönen, P. & Salgado, M. (2023). Protein Sci. 32, e4519.  Web of Science CrossRef PubMed Google Scholar
First citationHong, M. R., Kim, Y. S., Park, C. S., Lee, J. K., Kim, Y. S. & Oh, D. K. (2009). J. Biosci. Bioeng. 108, 36–40.  CrossRef PubMed CAS Google Scholar
First citationHutchinson, E. G. & Thornton, J. M. (1996). Protein Sci. 5, 212–220.  CrossRef CAS PubMed Web of Science Google Scholar
First citationJeng, W.-Y., Wang, N.-C., Lin, M.-H., Lin, C.-T., Liaw, Y.-C., Chang, W.-J., Liu, C.-I., Liang, P.-H. & Wang, A. H.-J. (2011). J. Struct. Biol. 173, 46–56.  Web of Science CrossRef CAS PubMed Google Scholar
First citationJiménez, J., Doerr, S., Martínez-Rosell, G., Rose, A. S. & De Fabritiis, G. (2017). Bioinformatics, 33, 3036–3042.  PubMed Google Scholar
First citationKabsch, W. (2010). Acta Cryst. D66, 125–132.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationKannan, P., Shafreen, M. M., Achudhan, A. B., Gupta, A. & Saleena, L. M. (2023). Carbohydr. Res. 530, 108855.  CrossRef PubMed Google Scholar
First citationKarplus, P. A. & Diederichs, K. (2015). Curr. Opin. Struct. Biol. 34, 60–68.  Web of Science CrossRef CAS PubMed Google Scholar
First citationKovalevskiy, O., Nicholls, R. A., Long, F., Carlon, A. & Murshudov, G. N. (2018). Acta Cryst. D74, 215–227.  Web of Science CrossRef IUCr Journals Google Scholar
First citationKulkarni, T. S., Khan, S., Villagomez, R., Mahmood, T., Lindahl, S., Logan, D. T., Linares-Pastén, J. A. & Nordberg Karlsson, E. (2017). Proteins, 85, 872–884.  CrossRef CAS PubMed Google Scholar
First citationKumar, K. S. D., Gurusaran, M., Satheesh, S. N., Radha, P., Pavithra, S., Thulaa Tharshan, K. P. S., Helliwell, J. R. & Sekar, K. (2015). J. Appl. Cryst. 48, 939–942.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationLaskowski, R. A., Jabłońska, J., Pravda, L., Vařeková, R. S. & Thornton, J. M. (2018). Protein Sci. 27, 129–134.  Web of Science CrossRef CAS PubMed Google Scholar
First citationLaskowski, R. A. & Thornton, J. M. (2022). Protein Sci. 31, 283–289.  Web of Science CrossRef CAS PubMed Google Scholar
First citationLaskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283–291.  CrossRef CAS Web of Science IUCr Journals Google Scholar
First citationLong, F., Vagin, A. A., Young, P. & Murshudov, G. N. (2008). Acta Cryst. D64, 125–132.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationMadeira, F., Pearce, M., Tivey, A. R. N., Basutkar, P., Lee, J., Edbali, O., Madhusoodanan, N., Kolesnikov, A. & Lopez, R. (2022). Nucleic Acids Res. 50, W276–W279.  Web of Science CrossRef CAS PubMed Google Scholar
First citationMatsuzawa, T., Watanabe, M. & Yaoi, K. (2017). Appl. Microbiol. Biotechnol. 101, 8353–8363.  CrossRef CAS PubMed Google Scholar
First citationMól, P. C. G., Júnior, J. C. Q., Veríssimo, L. A. A., Boscolo, M., Gomes, E., Minim, L. A. & Da Silva, R. (2023). Process Biochem. 130, 26–39.  Google Scholar
First citationOuyang, B., Wang, G., Zhang, N., Zuo, J., Huang, Y. & Zhao, X. (2023). Molecules, 28, 4990.  CrossRef PubMed Google Scholar
First citationPettersen, E. F., Goddard, T. D., Huang, C. C., Meng, E. C., Couch, G. S., Croll, T. I., Morris, J. H. & Ferrin, T. E. (2021). Protein Sci. 30, 70–82.  Web of Science CrossRef CAS PubMed Google Scholar
First citationRobert, X. & Gouet, P. (2014). Nucleic Acids Res. 42, W320–W324.  Web of Science CrossRef CAS PubMed Google Scholar
First citationSanz-Aparicio, J., Hermoso, J. A., Martínez-Ripoll, M., Lequerica, J. L. & Polaina, J. (1998). J. Mol. Biol. 275, 491–502.  Web of Science CAS PubMed Google Scholar
First citationSeshadri, S., Akiyama, T., Opassiri, R., Kuaprasert, B. & Cairns, J. K. (2009). Plant Physiol. 151, 47–58.  Web of Science CrossRef PubMed CAS Google Scholar
First citationSharma, K., Thakur, A., Kumar, R. & Goyal, A. (2019). Carbohydr. Res. 483, 107750.  CrossRef PubMed Google Scholar
First citationSillitoe, I., Bordin, N., Dawson, N., Waman, V. P., Ashford, P., Scholes, H. M., Pang, C. S. M., Woodridge, L., Rauer, C., Sen, N., Abbasian, M., Le Cornu, S., Lam, S. D., Berka, K., Varekova, I. H., Svobodova, R., Lees, J. & Orengo, C. A. (2021). Nucleic Acids Res. 49, D266–D273.  Web of Science CrossRef CAS PubMed Google Scholar
First citationTeze, D., Hendrickx, J., Czjzek, M., Ropartz, D., Sanejouand, Y.-H., Tran, V., Tellier, C. & Dion, M. (2014). Protein Eng. Des. Sel. 27, 13–19.  Web of Science CrossRef CAS PubMed Google Scholar
First citationWang, X., He, X., Yang, S., An, X., Chang, W. & Liang, D. (2003). J. Bacteriol. 185, 4248–4255.  CrossRef PubMed CAS Google Scholar
First citationWilliams, C. J., Headd, J. J., Moriarty, N. W., Prisant, M. G., Videau, L. L., Deis, L. N., Verma, V., Keedy, D. A., Hintze, B. J., Chen, V. B., Jain, S., Lewis, S. M., Arendall, W. B., Snoeyink, J., Adams, P. D., Lovell, S. C., Richardson, J. S. & Richardson, D. C. (2018). Protein Sci. 27, 293–315.  Web of Science CrossRef CAS PubMed Google Scholar
First citationWinn, M. D., Ballard, C. C., Cowtan, K. D., Dodson, E. J., Emsley, P., Evans, P. R., Keegan, R. M., Krissinel, E. B., Leslie, A. G. W., McCoy, A., McNicholas, S. J., Murshudov, G. N., Pannu, N. S., Potterton, E. A., Powell, H. R., Read, R. J., Vagin, A. & Wilson, K. S. (2011). Acta Cryst. D67, 235–242.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationZechel, D. L., Boraston, A. B., Gloster, T., Boraston, C. M., Mac­donald, J. M., Tilbrook, D. M. G., Stick, R. V. & Davies, G. J. (2003). J. Am. Chem. Soc. 125, 14313–14323.  Web of Science CrossRef PubMed CAS Google Scholar

View original article
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY

留言 (0)

沒有登入
gif
format_indent_decrease