Post-translational modifications in the Protein Data Bank

References

First citationAdam, R. M., Mukhopadhyay, N. K., Kim, J., Di Vizio, D., Cinar, B., Boucher, K., Solomon, K. R. & Freeman, M. R. (2007). Cancer Res. 67, 6238–6246.  CrossRef PubMed CAS Google Scholar
First citationAgirre, J. (2017). Acta Cryst. D73, 171–186.  Web of Science CrossRef IUCr Journals Google Scholar
First citationAgirre, J., Ariza, A., Offen, W. A., Turkenburg, J. P., Roberts, S. M., McNicholas, S., Harris, P. V., McBrayer, B., Dohnalek, J., Cowtan, K. D., Davies, G. J. & Wilson, K. S. (2016). Acta Cryst. D72, 254–265.  Web of Science CrossRef IUCr Journals Google Scholar
First citationAgirre, J., Atanasova, M., Bagdonas, H., Ballard, C. B., Baslé, A., Beilsten-Edmands, J., Borges, R. J., Brown, D. G., Burgos-Mármol, J. J., Berrisford, J. M., Bond, P. S., Caballero, I., Catapano, L., Chojnowski, G., Cook, A. G., Cowtan, K. D., Croll, T. I., Debreczeni, J. É., Devenish, N. E., Dodson, E. J., Drevon, T. R., Emsley, P., Evans, G., Evans, P. R., Fando, M., Foadi, J., Fuentes-Montero, L., Garman, E. F., Gerstel, M., Gildea, R. J., Hatti, K., Hekkelman, M. L., Heuser, P., Hoh, S. W., Hough, M. A., Jenkins, H. T., Jiménez, E., Joosten, R. P., Keegan, R. M., Keep, N., Krissinel, E. B., Kolenko, P., Kovalevskiy, O., Lamzin, V. S., Lawson, D. M., Lebedev, A. A., Leslie, A. G. W., Lohkamp, B., Long, F., Malý, M., McCoy, A. J., McNicholas, S. J., Medina, A., Millán, C., Murray, J. W., Murshudov, G. N., Nicholls, R. A., Noble, M. E. M., Oeffner, R., Pannu, N. S., Parkhurst, J. M., Pearce, N., Pereira, J., Perrakis, A., Powell, H. R., Read, R. J., Rigden, D. J., Rochira, W., Sammito, M., Sánchez Rodríguez, F., Sheldrick, G. M., Shelley, K. L., Simkovic, F., Simpkin, A. J., Skubak, P., Sobolev, E., Steiner, R. A., Stevenson, K., Tews, I., Thomas, J. M. H., Thorn, A., Valls, J. T., Uski, V., Usón, I., Vagin, A., Velankar, S., Vollmar, M., Walden, H., Waterman, D., Wilson, K. S., Winn, M. D., Winter, G., Wojdyr, M. & Yamashita, K. (2023). Acta Cryst. D79, 449–461.  Web of Science CrossRef IUCr Journals Google Scholar
First citationAgirre, J., Davies, G. J., Wilson, K. S. & Cowtan, K. D. (2017). Curr. Opin. Struct. Biol. 44, 39–47.  Web of Science CrossRef CAS PubMed Google Scholar
First citationAgirre, J., Iglesias-Fernández, J., Rovira, C., Davies, G. J., Wilson, K. S. & Cowtan, K. D. (2015). Nat. Struct. Mol. Biol. 22, 833–834.  Web of Science CrossRef CAS PubMed Google Scholar
First citationAn, H. J., Froehlich, J. W. & Lebrilla, C. B. (2009). Curr. Opin. Chem. Biol. 13, 421–426.  CrossRef PubMed CAS Google Scholar
First citationAtanasova, M., Bagdonas, H. & Agirre, J. (2020). Curr. Opin. Struct. Biol. 62, 70–78.  Web of Science CrossRef CAS PubMed Google Scholar
First citationAtanasova, M., Nicholls, R. A., Joosten, R. P. & Agirre, J. (2022). Acta Cryst. D78, 455–465.  Web of Science CrossRef IUCr Journals Google Scholar
First citationBai, A. H. C., Wu, W. K. K., Xu, L., Wong, S. H., Go, M. Y., Chan, A. W. H., Harbord, M., Zhang, S., Chen, M., Wu, J. C. Y., Chan, M. W. Y., Chan, M. T. V., Chan, F. K. L., Sung, J. J. Y., Yu, J., Cheng, A. S. L. & Ng, S. C. (2016). J. Crohns Colitis, 10, 726–734.  CrossRef PubMed Google Scholar
First citationBaldwin, T. A., Teuber, J. P., Kuwabara, Y., Subramani, A., Lin, S. J., Kanisicak, O., Vagnozzi, R. J., Zhang, W., Brody, M. J. & Molkentin, J. D. (2023). J. Biol. Chem. 299, 105426.  CrossRef PubMed Google Scholar
First citationBannister, A. J. & Kouzarides, T. (2011). Cell Res. 21, 381–395.  CrossRef CAS PubMed Google Scholar
First citationBasheer, N., Smolek, T., Hassan, I., Liu, F., Iqbal, K., Zilka, N. & Novak, P. (2023). Mol. Psychiatry, 28, 2197–2214.  CrossRef CAS PubMed Google Scholar
First citationBedem, H. van den & Wilson, M. A. (2019). J. Synchrotron Rad. 26, 958–966.  Web of Science CrossRef IUCr Journals Google Scholar
First citationBehnia, R., Panic, B., Whyte, J. R. C. & Munro, S. (2004). Nat. Cell Biol. 6, 405–413.  CrossRef PubMed CAS Google Scholar
First citationBerlett, B. S., Friguet, B., Yim, M. B., Chock, P. B. & Stadtman, E. R. (1996). Proc. Natl Acad. Sci. USA, 93, 1776–1780.  CrossRef CAS PubMed Google Scholar
First citationBerman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235–242.  Web of Science CrossRef PubMed CAS Google Scholar
First citationBetts, M. J., Wichmann, O., Utz, M., Andre, T., Petsalaki, E., Minguez, P., Parca, L., Roth, F. P., Gavin, A.-C., Bork, P. & Russell, R. B. (2017). PLoS Comput. Biol. 13, e1005462.  CrossRef PubMed Google Scholar
First citationBeusekom, B. van, Lütteke, T. & Joosten, R. P. (2018). Acta Cryst. F74, 463–472.  Web of Science CrossRef IUCr Journals Google Scholar
First citationBhullar, K. S., Lagarón, N. O., McGowan, E. M., Parmar, I., Jha, A., Hubbard, B. P. & Rupasinghe, H. P. V. (2018). Mol. Cancer, 17, 48.  CrossRef PubMed Google Scholar
First citationBittrich, S., Bhikadiya, C., Bi, C., Chao, H., Duarte, J. M., Dutta, S., Fayazi, M., Henry, J., Khokhriakov, I., Lowe, R., Piehl, D. W., Segura, J., Vallat, B., Voigt, M., Westbrook, J. D., Burley, S. K. & Rose, Y. (2023). J. Mol. Biol. 435, 167994.  Web of Science CrossRef PubMed Google Scholar
First citationBlom, N., Gammeltoft, S. & Brunak, S. (1999). J. Mol. Biol. 294, 1351–1362.  Web of Science CrossRef PubMed CAS Google Scholar
First citationBludau, I., Willems, S., Zeng, W.-F., Strauss, M. T., Hansen, F. M., Tanzer, M. C., Karayel, O., Schulman, B. A. & Mann, M. (2022). PLoS Biol. 20, e3001636.  CrossRef PubMed Google Scholar
First citationBokhovchuk, F., Mesrouze, Y., Meyerhofer, M., Fontana, P., Zimmermann, C., Villard, F., Erdmann, D., Kallen, J., Scheufler, C., Velez-Vega, C. & Chène, P. (2023). Protein Sci. 32, e4545.  CrossRef PubMed Google Scholar
First citationBorini Etichetti, C. M., Arel Zalazar, E., Cocordano, N. & Girardini, J. (2020). Front. Oncol. 10, 595034.  CrossRef PubMed Google Scholar
First citationBoutin, J. A., Marande, W., Goussard, M., Loynel, A., Canet, E. & Fauchere, J.-L. (1998). Arch. Biochem. Biophys. 354, 83–94.  CrossRef CAS PubMed Google Scholar
First citationBrandt, A., Glanville, R. W., Hörlein, D., Bruckner, P., Timpl, R., Fietzek, P. P. & Kühn, K. (1984). Biochem. J. 219, 625–634.  CrossRef CAS PubMed Google Scholar
First citationBrobbey, C., Liu, L., Yin, S. & Gan, W. (2022). Int. J. Mol. Sci. 23, 9780.  CrossRef PubMed Google Scholar
First citationBruick, R. K. & McKnight, S. L. (2001). Science, 294, 1337–1340.  CrossRef PubMed CAS Google Scholar
First citationBryant, M. & Ratner, L. (1990). Proc. Natl Acad. Sci. USA, 87, 523–527.  CrossRef CAS PubMed Google Scholar
First citationBuglino, J. A. & Resh, M. D. (2008). J. Biol. Chem. 283, 22076–22088.  Web of Science CrossRef PubMed CAS Google Scholar
First citationCanet-Avilés, R. M., Wilson, M. A., Miller, D. W., Ahmad, R., McLendon, C., Bandyopadhyay, S., Baptista, M. J., Ringe, D., Petsko, G. A. & Cookson, M. R. (2004). Proc. Natl Acad. Sci. USA, 101, 9103–9108.  Web of Science PubMed Google Scholar
First citationChandran, S. & Binninger, D. (2023). Antioxidants, 13, 21.  CrossRef PubMed Google Scholar
First citationChelius, D., Jing, K., Lueras, A., Rehder, D. S., Dillon, T. M., Vizel, A., Rajan, R. S., Li, T., Treuheit, M. J. & Bondarenko, P. V. (2006). Anal. Chem. 78, 2370–2376.  CrossRef PubMed CAS Google Scholar
First citationChoudhary, C., Kumar, C., Gnad, F., Nielsen, M. L., Rehman, M., Walther, T. C., Olsen, J. V. & Mann, M. (2009). Science, 325, 834–840.  Web of Science CrossRef PubMed CAS Google Scholar
First citationClaiborne, A., Yeh, J. I., Mallett, T. C., Luba, J., Crane, E. J., Charrier, V. & Parsonage, D. (1999). Biochemistry, 38, 15407–15416.  Web of Science CrossRef PubMed CAS Google Scholar
First citationClose, D. M. & Bernhard, W. A. (2019). J. Synchrotron Rad. 26, 945–957.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationConnell, G. E. & Hanes, C. S. (1956). Nature, 177, 377–378.  CrossRef PubMed CAS Google Scholar
First citationCopeland, R. A. (2018). Phil. Trans. R. Soc. B, 373, 20170080.  CrossRef PubMed Google Scholar
First citationCrosby, H. A. & Escalante-Semerena, J. C. (2014). J. Bacteriol. 196, 1496–1504.  CrossRef PubMed Google Scholar
First citationCrosby, H. A., Pelletier, D. A., Hurst, G. B. & Escalante-Semerena, J. C. (2012). J. Biol. Chem. 287, 15590–15601.  CrossRef CAS PubMed Google Scholar
First citationCuiffo, B. & Ren, R. (2010). Blood, 115, 3598–3605.  CrossRef CAS PubMed Google Scholar
First citationCummins, P. M. & O'Connor, B. (1998). Biochim. Biophys. Acta, 1429, 1–17.  Web of Science CrossRef CAS PubMed Google Scholar
First citationDaily, K. M., Radivojac, P. & Dunker, A. K. (2005). 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, pp. 1–7. PIscataway: IEEE.  Google Scholar
First citationDavie, J. R. (1998). Curr. Opin. Genet. Dev. 8, 173–178.  CrossRef CAS PubMed Google Scholar
First citationDavies, A. M., Beavil, R. L., Barbolov, M., Sandhar, B. S., Gould, H. J., Beavil, A. J., Sutton, B. J. & McDonnell, J. M. (2023). Mol. Immunol. 159, 28–37.  CrossRef CAS PubMed Google Scholar
First citationDekker, F. J., van den Bosch, T. & Martin, N. I. (2014). Drug Discov. Today, 19, 654–660.  CrossRef CAS PubMed Google Scholar
First citationDeller, M. C., Kong, L. & Rupp, B. (2016). Acta Cryst. F72, 72–95.  Web of Science CrossRef IUCr Journals Google Scholar
First citationDespres, C., Byrne, C., Qi, H., Cantrelle, F.-X., Huvent, I., Chambraud, B., Baulieu, E.-E., Jacquot, Y., Landrieu, I., Lippens, G. & Smet-Nocca, C. (2017). Proc. Natl Acad. Sci. USA, 114, 9080–9085.  CrossRef CAS PubMed Google Scholar
First citationDialpuri, J. S., Bagdonas, H., Atanasova, M., Schofield, L. C., Hekkelman, M. L., Joosten, R. P. & Agirre, J. (2023). Acta Cryst. D79, 462–472.  Web of Science CrossRef IUCr Journals Google Scholar
First citationDialpuri, J. S., Bagdonas, H., Schofield, L. C., Pham, P. T., Holland, L. & Agirre, J. (2024). Beilstein J. Org. Chem. 20, 931–939.  CrossRef CAS PubMed Google Scholar
First citationDialpuri, J. S., Bagdonas, H., Schofield, L. C., Pham, P. T., Holland, L., Bond, P. S., Sánchez Rodríguez, F., McNicholas, S. J. & Agirre, J. (2024). Acta Cryst. F80, 30–35.  Web of Science CrossRef IUCr Journals Google Scholar
First citationDiaz, K., Meng, Y. & Huang, R. (2021). Curr. Opin. Chem. Biol. 63, 115–122.  CrossRef CAS PubMed Google Scholar
First citationDoležal, M., Zábranský, A., Dostál, J., Vaněk, O., Brynda, J., Lepšík, M., Hadravová, R. & Pichová, I. (2016). Retrovirology, 13, 2.  PubMed Google Scholar
First citationDurek, P., Schudoma, C., Weckwerth, W., Selbig, J. & Walther, D. (2009). BMC Bioinformatics, 10, 117.  Google Scholar
First citationEmsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486–501.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationFerrara, C., Grau, S., Jäger, C., Sondermann, P., Brünker, P., Waldhauer, I., Hennig, M., Ruf, A., Rufer, A. C., Stihle, M., Umaña, P. & Benz, J. (2011). Proc. Natl Acad. Sci. USA, 108, 12669–12674.  Web of Science CrossRef CAS PubMed Google Scholar
First citationGaffarogullari, E. C., Masterson, L. R., Metcalfe, E. E., Traaseth, N. J., Balatri, E., Musa, M. M., Mullen, D., Distefano, M. D. & Veglia, G. (2011). J. Mol. Biol. 411, 823–836.  CrossRef

留言 (0)

沒有登入
gif