Cryo2RT: a high-throughput method for room-temperature macromolecular crystallography from cryocooled crystals

References

First citationAndo, N. (2023). Crystallography of Protein Dynamics. New York: Academic Press.  Google Scholar
First citationAtakisi, H., Moreau, D. W. & Thorne, R. E. (2018). Acta Cryst. D74, 264–278.  Web of Science CrossRef IUCr Journals Google Scholar
First citationBaba, S., Shimada, A., Mizuno, N., Baba, J., Ago, H., Yamamoto, M. & Kumasaka, T. (2019). J. Appl. Cryst. 52, 699–705.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBasu, S., Kaminski, J. W., Panepucci, E., Huang, C.-Y., Warshamanage, R., Wang, M. & Wojdyla, J. A. (2019). J. Synchrotron Rad. 26, 244–252.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBerman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235–242.  Web of Science CrossRef PubMed CAS Google Scholar
First citationBourgeois, D. & Royant, A. (2005). Curr. Opin. Struct. Biol. 15, 538–547.  Web of Science CrossRef PubMed CAS Google Scholar
First citationBricogne, G., Blanc, E., Brandl, M., Flensburg, C., Keller, P., Paciorek, W., Roversi, P., Sharff, A., Smart, O. S., Vonrhein, C. & Womack, T. O. (2017). BUSTER. Global Phasing Ltd, Cambridge, United Kingdom.  Google Scholar
First citationChapman, H. N. (2018). Nat. Methods, 15, 774–775.  Web of Science CrossRef CAS PubMed Google Scholar
First citationChapman, H. N. (2023). IUCrJ, 10, 246–247.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationDoukov, T., Herschlag, D. & Yabukarski, F. (2020). J. Appl. Cryst. 53, 1493–1501.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationDu, S., Wankowicz, S. A., Yabukarski, F., Doukov, T., Herschlag, D. & Fraser, J. S. (2023). Methods Enzymol. 688, 223–254.  CrossRef PubMed Google Scholar
First citationDuke, E. M. H. & Johnson, L. N. (2010). Proc. R. Soc. London Ser. A, 466, 3421–3452.  CAS Google Scholar
First citationEmsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486–501.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationFischer, M. (2021). Q. Rev. Biophys. 54, e1.  Web of Science CrossRef PubMed Google Scholar
First citationFischer, M., Shoichet, B. K. & Fraser, J. S. (2015). ChemBioChem, 16, 1560–1564.  Web of Science CrossRef CAS PubMed Google Scholar
First citationFörster, A., Brandstetter, S. & Schulze-Briese, C. (2019). Phil. Trans. R. Soc. A, 377, 20180241.  PubMed Google Scholar
First citationFraser, J. S., Clarkson, M. W., Degnan, S. C., Erion, R., Kern, D. & Alber, T. (2009). Nature, 462, 669–673.  Web of Science CrossRef PubMed CAS Google Scholar
First citationFraser, J. S. & Murcko, M. A. (2024). Cell, 187, 517–520.  CrossRef CAS PubMed Google Scholar
First citationFraser, J. S., van den Bedem, H., Samelson, A. J., Lang, P. T., Holton, J. M., Echols, N. & Alber, T. (2011). Proc. Natl Acad. Sci. USA, 108, 16247–16252.  Web of Science CrossRef CAS PubMed Google Scholar
First citationGarman, E. F. & Schneider, T. R. (1997). J. Appl. Cryst. 30, 211–237.  CrossRef Web of Science IUCr Journals Google Scholar
First citationGrabowski, M., Cooper, D. R., Brzezinski, D., Macnar, J. M., Shabalin, I. G., Cymborowski, M., Otwinowski, Z. & Minor, W. (2021). Nucl. Instrum. Methods Phys. Res. B, 489, 30–40.  Web of Science CrossRef CAS PubMed Google Scholar
First citationHekstra, D. R. (2023). Annu. Rev. Biophys. 52, 255–274.  Web of Science CrossRef CAS PubMed Google Scholar
First citationHolton, J. M. (2009). J. Synchrotron Rad. 16, 133–142.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationHope, H. (1988). Acta Cryst. B44, 22–26.  CrossRef CAS Web of Science IUCr Journals Google Scholar
First citationHorrell, S., Kekilli, D., Sen, K., Owen, R. L., Dworkowski, F. S. N., Antonyuk, S. V., Keal, T. W., Yong, C. W., Eady, R. R., Hasnain, S. S., Strange, R. W. & Hough, M. A. (2018). IUCrJ, 5, 283–292.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationHuang, C.-Y., Aumonier, S., Engilberge, S., Eris, D., Smith, K. M. L., Leonarski, F., Wojdyla, J. A., Beale, J. H., Buntschu, D., Pauluhn, A., Sharpe, M. E., Metz, A., Olieric, V. & Wang, M. (2022). Acta Cryst. D78, 964–974.  Web of Science CrossRef IUCr Journals Google Scholar
First citationHuang, C.-Y., Meier, N., Caffrey, M., Wang, M. & Olieric, V. (2020). J. Appl. Cryst. 53, 854–859.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationHuang, C.-Y., Metz, A., Lange, R., Artico, N., Potot, C., Hazemann, J., Müller, M., Dos Santos, M., Chambovey, A., Ritz, D., Eris, D., Meyer, S., Bourquin, G., Sharpe, M. & Mac Sweeney, A. (2024). Acta Cryst. D80, 123–136.  Web of Science CrossRef IUCr Journals Google Scholar
First citationHuang, C.-Y., Olieric, V., Ma, P., Howe, N., Vogeley, L., Liu, X., Warshamanage, R., Weinert, T., Panepucci, E., Kobilka, B., Diederichs, K., Wang, M. & Caffrey, M. (2016). Acta Cryst. D72, 93–112.  Web of Science CrossRef IUCr Journals Google Scholar
First citationHuang, C.-Y., Olieric, V., Ma, P., Panepucci, E., Diederichs, K., Wang, M. & Caffrey, M. (2015). Acta Cryst. D71, 1238–1256.  Web of Science CrossRef IUCr Journals Google Scholar
First citationJuers, D. H., Lovelace, J., Bellamy, H. D., Snell, E. H., Matthews, B. W. & Borgstahl, G. E. O. (2007). Acta Cryst. D63, 1139–1153.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationJuers, D. H. & Matthews, B. W. (2001). J. Mol. Biol. 311, 851–862.  Web of Science CrossRef PubMed CAS Google Scholar
First citationJuers, D. H. & Matthews, B. W. (2004a). Q. Rev. Biophys. 37, 105–119.  Web of Science CrossRef PubMed CAS Google Scholar
First citationJuers, D. H. & Matthews, B. W. (2004b). Acta Cryst. D60, 412–421.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationJumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., Bridgland, A., Meyer, C., Kohl, S. A. A., Ballard, A. J., Cowie, A., Romera-Paredes, B., Nikolov, S., Jain, R., Adler, J., Back, T., Petersen, S., Reiman, D., Clancy, E., Zielinski, M., Steinegger, M., Pacholska, M., Berghammer, T., Bodenstein, S., Silver, D., Vinyals, O., Senior, A. W., Kavukcuoglu, K., Kohli, P. & Hassabis, D. (2021). Nature, 596, 583–589.  Web of Science CrossRef CAS PubMed Google Scholar
First citationKabsch, W. (2010). Acta Cryst. D66, 125–132.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationKeedy, D. A., Hill, Z. B., Biel, J. T., Kang, E., Rettenmaier, T. J., Brandão-Neto, J., Pearce, N. M., von Delft, F., Wells, J. A. & Fraser, J. S. (2018). eLife, 7, e36307.  Web of Science CrossRef PubMed Google Scholar
First citationKeedy, D. A., Kenner, L. R., Warkentin, M., Woldeyes, R. A., Hopkins, J. B., Thompson, M. C., Brewster, A. S., Van Benschoten, A. H., Baxter, E. L., Uervirojnangkoorn, M., McPhillips, S. E., Song, J., Alonso-Mori, R., Holton, J. M., Weis, W. I., Brunger, A. T., Soltis, S. M., Lemke, H., Gonzalez, A., Sauter, N. K., Cohen, A. E., van den Bedem, H., Thorne, R. E. & Fraser, J. S. (2015). eLife, 4, e07574.  Web of Science CrossRef PubMed Google Scholar
First citationKiefersauer, R., Than, M. E., Dobbek, H., Gremer, L., Melero, M., Strobl, S., Dias, J. M., Soulimane, T. & Huber, R. (2000). J. Appl. Cryst. 33, 1223–1230.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationKriminski, S., Caylor, C. L., Nonato, M. C., Finkelstein, K. D. & Thorne, R. E. (2002). Acta Cryst. D58, 459–471.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationMartiel, I., Mozzanica, A., Opara, N. L., Panepucci, E., Leonarski, F., Redford, S., Mohacsi, I., Guzenko, V., Ozerov, D., Padeste, C., Schmitt, B., Pedrini, B. & Wang, M. (2020). J. Synchrotron Rad. 27, 329–339.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationMartiel, I., Müller-Werkmeister, H. M. & Cohen, A. E. (2019). Acta Cryst. D75, 160–177.  Web of Science CrossRef IUCr Journals Google Scholar
First citationMcCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658–674.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationMokhtari, D. A., Appel, M. J., Fordyce, P. M. & Herschlag, D. (2021). Curr. Opin. Struct. Biol. 71, 259–273.  CrossRef CAS PubMed Google Scholar
First citationMoreau, D. W., Atakisi, H. & Thorne, R. E. (2019). IUCrJ, 6, 346–356.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationOwen, R. L., Axford, D., Nettleship, J. E., Owens, R. J., Robinson, J. I., Morgan, A. W., Doré, A. S., Lebon, G., Tate, C. G., Fry, E. E., Ren, J., Stuart, D. I. & Evans, G. (2012). Acta Cryst. D68, 810–818.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationOwen, R. L., Rudiño-Piñera, E. & Garman, E. F. (2006). Proc. Natl Acad. Sci. USA, 103, 4912–4917.  Web of Science CrossRef PubMed CAS Google Scholar
First citationPearson, A. R. & Mehrabi, P. (2020). Curr. Opin. Struct. Biol. 65, 168–174.  Web of Science CrossRef CAS PubMed Google Scholar
First citationPloscariu, N., Burnley, T., Gros, P. & Pearce, N. M. (2021). Acta Cryst. D77, 1357–1364.  Web of Science CrossRef IUCr Journals Google Scholar
First citationRoedig, P., Duman, R., Sanchez-Weatherby, J., Vartiainen, I., Burkhardt, A., Warmer, M., David, C., Wagner, A. & Meents, A. (2016). J. Appl. Cryst. 49, 968–975.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSanchez-Weatherby, J., Bowler, M. W., Huet, J., Gobbo, A., Felisaz, F., Lavault, B., Moya, R., Kadlec, J., Ravelli, R. B. G. & Cipriani, F. (2009). Acta Cryst. D65, 1237–1246.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSá Ribeiro, F. de & Lima, L. M. T. R. (2023). Biophys. Chem. 298, 107027.  Web of Science PubMed Google Scholar
First citationSchlichting, I., Berendzen, J., Chu, K., Stock, A. M., Maves, S. A., Benson, D. E., Sweet, R. M., Ringe, D., Petsko, G. A. & Sligar, S. G. (2000). Science, 287, 1615–1622.  Web of Science CrossRef PubMed CAS Google Scholar
First citationShoemaker, S. C. & Ando, N. (2018). Biochemistry, 57, 277–285.  Web of Science CrossRef CAS PubMed Google Scholar
First citationSielecki, A. R., Hendrickson, W. A., Broughton, C. G., Delbaere, L. T., Brayer, G. D. & James, M. N. G. (1979). J. Mol. Biol. 134, 781–804.  CrossRef PubMed CAS Web of Science Google Scholar
First citationSjögren, T., Carlsson, G., Larsson, G., Hajdu, A., Andersson, C.,

View original article
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY

留言 (0)

沒有登入
gif
format_indent_decrease