Akbaba TH, Sag E, Balci-Peynircioglu B, Ozen S. Epigenetics for clinicians from the perspective of pediatric rheumatic diseases. Curr Rheumatol Rep. 2020;22(8):46.
Article CAS PubMed Google Scholar
Gebert LFR, MacRae IJ. Regulation of microRNA function in animals. Nat Rev Mol Cell Biol. 2019;20(1):21–37.
Article CAS PubMed PubMed Central Google Scholar
Huang HY, Lin YC, Cui S, Huang Y, Tang Y, Xu J, et al. miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions. Nucleic Acids Res. 2022;50(D1):D222–30.
Article CAS PubMed Google Scholar
Akbaba TH, Akkaya-Ulum YZ, Batu ED, Penco F, Wittkowski H, Kant B, et al. Dysregulation of miRNA-30e-3p targeting IL-1β in an international cohort of systemic autoinflammatory disease patients. J Mol Med. 2023;101(6):757–66.
Article CAS PubMed Google Scholar
Akbaba TH, Akkaya-Ulum YZ, Tavukcuoglu Z, Bilginer Y, Ozen S, Balci-Peynircioglu B. Inflammation-related differentially expressed common miRNAs in systemic autoinflammatory disorders patients can regulate the clinical course. Clin Exp Rheumatol. 2021;6:66.
Yu B, Chen X. Analysis of miRNA Modifications. Methods Mol Biol. 2010;592:137–48.
Article CAS PubMed PubMed Central Google Scholar
Nakanishi K. Anatomy of RISC: how do small RNAs and chaperones activate Argonaute proteins? Wiley Interdiscip Rev RNA. 2016;7(5):637–60.
Article CAS PubMed PubMed Central Google Scholar
Medley JC, Panzade G, Zinovyeva AY. microRNA strand selection: Unwinding the rules. Wiley Interdiscip Rev RNA. 2021;12(3):e1627-e.
Kim YK, Kim B, Kim VN. Re-evaluation of the roles of DROSHA, Exportin 5, and DICER in microRNA biogenesis. Proc Natl Acad Sci USA. 2016;113(13):E1881–9.
Article CAS PubMed PubMed Central Google Scholar
Salim U, Kumar A, Kulshreshtha R, Vivekanandan P. Biogenesis, characterization, and functions of mirtrons. Wiley Interdiscip Rev RNA. 2022;13(1): e1680.
Article CAS PubMed Google Scholar
Ørom UA, Nielsen FC, Lund AH. MicroRNA-10a binds the 5′UTR of ribosomal protein mRNAs and enhances their translation. Mol Cell. 2008;30(4):460–71.
Roberts TC. The MicroRNA biology of the Mammalian nucleus. Mol Ther Nucleic Acids. 2014;3:e188-e.
Turunen TA, Roberts TC, Laitinen P, Väänänen MA, Korhonen P, Malm T, et al. Changes in nuclear and cytoplasmic microRNA distribution in response to hypoxic stress. Sci Rep. 2019;9(1):1–12.
Matsui M, Chu Y, Zhang H, Gagnon KT, Shaikh S, Kuchimanchi S, et al. Promoter RNA links transcriptional regulation of inflammatory pathway genes. Nucleic Acids Res. 2013;41(22):10086–109.
Article CAS PubMed PubMed Central Google Scholar
Korla K, Arrigo P, Mitra C. Promoters, toll like receptors and microRNAs: a strange association. Indian J Biochem Biophys. 2013;50:169–76.
Tavukcuoglu Z, Akkaya-Ulum YZ, Yersal N, Horzum U, Akbaba TH, Karadag O, et al. Characterization of serum extracellular vesicles and their differential level of miR-197-3p in familial Mediterranean fever patients. Nucleosides Nucleotides Nucleic Acids. 2023;66:1–15.
Huang X, Ding L, Bennewith KL, Tong RT, Welford SM, Ang KK, et al. Hypoxia-inducible mir-210 regulates normoxic gene expression involved in tumor initiation. Mol Cell. 2009;35(6):856–67.
Article CAS PubMed PubMed Central Google Scholar
Zhao J, Xie F, Chen R, Zhang Z, Dai R, Zhao N, et al. Transcription factor NF-κB promotes acute lung injury via microRNA-99b-mediated PRDM1 down-regulation. J Biol Chem. 2020;295(52):18638–48.
Article CAS PubMed Google Scholar
Zhang HM, Kuang S, Xiong X, Gao T, Liu C, Guo AY. Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases. Brief Bioinform. 2015;16(1):45–58.
Article CAS PubMed Google Scholar
Glaich O, Parikh S, Bell RE, Mekahel K, Donyo M, Leader Y, et al. DNA methylation directs microRNA biogenesis in mammalian cells. Nat Commun. 2019;10(1):1–11.
Ye S, Xiong F, He X, Yuan Y, Li D, Ye D, et al. DNA hypermethylation-induced miR-182 silence targets BCL2 and HOXA9 to facilitate the self-renewal of leukemia stem cell, accelerate acute myeloid leukemia progression, and determine the sensitivity of BCL2 inhibitor venetoclax. Theranostics. 2023;13(1):77–94.
Article CAS PubMed PubMed Central Google Scholar
Paszek S, Gabło N, Barnaś E, Szybka M, Morawiec J, Kołacinska A, et al. Dysregulation of microRNAs in triple-negative breast cancer. Ginekol Pol. 2017;88(10):530–6.
Wei Q, Lei R, Hu G. Roles of miR-182 in sensory organ development and cancer. Thorac Cancer. 2015;6(1):2–9.
Article CAS PubMed PubMed Central Google Scholar
Yadav P, Bandyopadhayaya S, Ford BM, Mandal C. Interplay between DNA methyltransferase 1 and microRNAs during tumorigenesis. Curr Drug Targets. 2021;22(10):1129–48.
Article CAS PubMed Google Scholar
Mortazavi D, Sohrabi B, Mosallaei M, Nariman-Saleh-Fam Z, Bastami M, Mansoori Y, et al. Epi-miRNAs: regulators of the histone modification machinery in human cancer. J Oncol. 2022;6:66.
Glogovitis I, Yahubyan G, Würdinger T, Koppers-Lalic D, Baev V. isomiRs-hidden soldiers in the miRNA regulatory army, and how to find them? Biomolecules. 2020;11(1):66.
Fareh M, Yeom KH, Haagsma AC, Chauhan S, Heo I, Joo C. TRBP ensures efficient Dicer processing of precursor microRNA in RNA-crowded environments. Nat Commun. 2016;7(1):1–11.
Lee HY, Zhou K, Smith AM, Noland CL, Doudna JA. Differential roles of human Dicer-binding proteins TRBP and PACT in small RNA processing. Nucleic Acids Res. 2013;41(13):6568–76.
Article CAS PubMed PubMed Central Google Scholar
Li L, Song Y, Shi X, Liu J, Xiong S, Chen W, et al. The landscape of miRNA editing in animals and its impact on miRNA biogenesis and targeting. Genome Res. 2018;28(1):132–43.
Article CAS PubMed PubMed Central Google Scholar
Koppers-Lalic D, Hackenberg M, Bijnsdorp IV, van Eijndhoven MAJ, Sadek P, Sie D, et al. Nontemplated nucleotide additions distinguish the small RNA composition in cells from exosomes. Cell Rep. 2014;8(6):1649–58.
Article CAS PubMed Google Scholar
Króliczewski J, Sobolewska A, Lejnowski D, Collawn JF, Bartoszewski R. microRNA single polynucleotide polymorphism influences on microRNA biogenesis and mRNA target specificity. Gene. 2018;640:66–72.
Bian EB, Xiong ZG, Li J. New advances of lncRNAs in liver fibrosis, with specific focus on lncRNA-miRNA interactions. J Cell Physiol. 2019;234(3):2194–203.
Article CAS PubMed Google Scholar
Yamamura S, Imai-Sumida M, Tanaka Y, Dahiya R. Interaction and cross-talk between non-coding RNAs. Cell Mol Life Sci. 2018;75(3):467–84.
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