Exploring regulatory mechanisms on miRNAs and their implications in inflammation-related diseases

Akbaba TH, Sag E, Balci-Peynircioglu B, Ozen S. Epigenetics for clinicians from the perspective of pediatric rheumatic diseases. Curr Rheumatol Rep. 2020;22(8):46.

Article  CAS  PubMed  Google Scholar 

Gebert LFR, MacRae IJ. Regulation of microRNA function in animals. Nat Rev Mol Cell Biol. 2019;20(1):21–37.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Huang HY, Lin YC, Cui S, Huang Y, Tang Y, Xu J, et al. miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions. Nucleic Acids Res. 2022;50(D1):D222–30.

Article  CAS  PubMed  Google Scholar 

Akbaba TH, Akkaya-Ulum YZ, Batu ED, Penco F, Wittkowski H, Kant B, et al. Dysregulation of miRNA-30e-3p targeting IL-1β in an international cohort of systemic autoinflammatory disease patients. J Mol Med. 2023;101(6):757–66.

Article  CAS  PubMed  Google Scholar 

Akbaba TH, Akkaya-Ulum YZ, Tavukcuoglu Z, Bilginer Y, Ozen S, Balci-Peynircioglu B. Inflammation-related differentially expressed common miRNAs in systemic autoinflammatory disorders patients can regulate the clinical course. Clin Exp Rheumatol. 2021;6:66.

Google Scholar 

Yu B, Chen X. Analysis of miRNA Modifications. Methods Mol Biol. 2010;592:137–48.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Nakanishi K. Anatomy of RISC: how do small RNAs and chaperones activate Argonaute proteins? Wiley Interdiscip Rev RNA. 2016;7(5):637–60.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Medley JC, Panzade G, Zinovyeva AY. microRNA strand selection: Unwinding the rules. Wiley Interdiscip Rev RNA. 2021;12(3):e1627-e.

Article  Google Scholar 

Kim YK, Kim B, Kim VN. Re-evaluation of the roles of DROSHA, Exportin 5, and DICER in microRNA biogenesis. Proc Natl Acad Sci USA. 2016;113(13):E1881–9.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Salim U, Kumar A, Kulshreshtha R, Vivekanandan P. Biogenesis, characterization, and functions of mirtrons. Wiley Interdiscip Rev RNA. 2022;13(1): e1680.

Article  CAS  PubMed  Google Scholar 

Ørom UA, Nielsen FC, Lund AH. MicroRNA-10a binds the 5′UTR of ribosomal protein mRNAs and enhances their translation. Mol Cell. 2008;30(4):460–71.

Article  PubMed  Google Scholar 

Roberts TC. The MicroRNA biology of the Mammalian nucleus. Mol Ther Nucleic Acids. 2014;3:e188-e.

Article  Google Scholar 

Turunen TA, Roberts TC, Laitinen P, Väänänen MA, Korhonen P, Malm T, et al. Changes in nuclear and cytoplasmic microRNA distribution in response to hypoxic stress. Sci Rep. 2019;9(1):1–12.

Article  Google Scholar 

Matsui M, Chu Y, Zhang H, Gagnon KT, Shaikh S, Kuchimanchi S, et al. Promoter RNA links transcriptional regulation of inflammatory pathway genes. Nucleic Acids Res. 2013;41(22):10086–109.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Korla K, Arrigo P, Mitra C. Promoters, toll like receptors and microRNAs: a strange association. Indian J Biochem Biophys. 2013;50:169–76.

CAS  PubMed  Google Scholar 

Tavukcuoglu Z, Akkaya-Ulum YZ, Yersal N, Horzum U, Akbaba TH, Karadag O, et al. Characterization of serum extracellular vesicles and their differential level of miR-197-3p in familial Mediterranean fever patients. Nucleosides Nucleotides Nucleic Acids. 2023;66:1–15.

Google Scholar 

Huang X, Ding L, Bennewith KL, Tong RT, Welford SM, Ang KK, et al. Hypoxia-inducible mir-210 regulates normoxic gene expression involved in tumor initiation. Mol Cell. 2009;35(6):856–67.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Zhao J, Xie F, Chen R, Zhang Z, Dai R, Zhao N, et al. Transcription factor NF-κB promotes acute lung injury via microRNA-99b-mediated PRDM1 down-regulation. J Biol Chem. 2020;295(52):18638–48.

Article  CAS  PubMed  Google Scholar 

Zhang HM, Kuang S, Xiong X, Gao T, Liu C, Guo AY. Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases. Brief Bioinform. 2015;16(1):45–58.

Article  CAS  PubMed  Google Scholar 

Glaich O, Parikh S, Bell RE, Mekahel K, Donyo M, Leader Y, et al. DNA methylation directs microRNA biogenesis in mammalian cells. Nat Commun. 2019;10(1):1–11.

Article  Google Scholar 

Ye S, Xiong F, He X, Yuan Y, Li D, Ye D, et al. DNA hypermethylation-induced miR-182 silence targets BCL2 and HOXA9 to facilitate the self-renewal of leukemia stem cell, accelerate acute myeloid leukemia progression, and determine the sensitivity of BCL2 inhibitor venetoclax. Theranostics. 2023;13(1):77–94.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Paszek S, Gabło N, Barnaś E, Szybka M, Morawiec J, Kołacinska A, et al. Dysregulation of microRNAs in triple-negative breast cancer. Ginekol Pol. 2017;88(10):530–6.

Article  PubMed  Google Scholar 

Wei Q, Lei R, Hu G. Roles of miR-182 in sensory organ development and cancer. Thorac Cancer. 2015;6(1):2–9.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Yadav P, Bandyopadhayaya S, Ford BM, Mandal C. Interplay between DNA methyltransferase 1 and microRNAs during tumorigenesis. Curr Drug Targets. 2021;22(10):1129–48.

Article  CAS  PubMed  Google Scholar 

Mortazavi D, Sohrabi B, Mosallaei M, Nariman-Saleh-Fam Z, Bastami M, Mansoori Y, et al. Epi-miRNAs: regulators of the histone modification machinery in human cancer. J Oncol. 2022;6:66.

Google Scholar 

Glogovitis I, Yahubyan G, Würdinger T, Koppers-Lalic D, Baev V. isomiRs-hidden soldiers in the miRNA regulatory army, and how to find them? Biomolecules. 2020;11(1):66.

Article  Google Scholar 

Fareh M, Yeom KH, Haagsma AC, Chauhan S, Heo I, Joo C. TRBP ensures efficient Dicer processing of precursor microRNA in RNA-crowded environments. Nat Commun. 2016;7(1):1–11.

Article  Google Scholar 

Lee HY, Zhou K, Smith AM, Noland CL, Doudna JA. Differential roles of human Dicer-binding proteins TRBP and PACT in small RNA processing. Nucleic Acids Res. 2013;41(13):6568–76.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li L, Song Y, Shi X, Liu J, Xiong S, Chen W, et al. The landscape of miRNA editing in animals and its impact on miRNA biogenesis and targeting. Genome Res. 2018;28(1):132–43.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Koppers-Lalic D, Hackenberg M, Bijnsdorp IV, van Eijndhoven MAJ, Sadek P, Sie D, et al. Nontemplated nucleotide additions distinguish the small RNA composition in cells from exosomes. Cell Rep. 2014;8(6):1649–58.

Article  CAS  PubMed  Google Scholar 

Króliczewski J, Sobolewska A, Lejnowski D, Collawn JF, Bartoszewski R. microRNA single polynucleotide polymorphism influences on microRNA biogenesis and mRNA target specificity. Gene. 2018;640:66–72.

Article  PubMed  Google Scholar 

Bian EB, Xiong ZG, Li J. New advances of lncRNAs in liver fibrosis, with specific focus on lncRNA-miRNA interactions. J Cell Physiol. 2019;234(3):2194–203.

Article  CAS  PubMed  Google Scholar 

Yamamura S, Imai-Sumida M, Tanaka Y, Dahiya R. Interaction and cross-talk between non-coding RNAs. Cell Mol Life Sci. 2018;75(3):467–84.

Article  CAS  PubMed 

留言 (0)

沒有登入
gif