Lerner, A. & Matthias, T. Changes in intestinal tight junction permeability associated with industrial food additives explain the rising incidence of autoimmune disease. Autoimmun. Rev. 14, 479–489 (2015).

Article  CAS  PubMed  Google Scholar 

Whelan, K., Bancil, A. S., Lindsay, J. O. & Chassaing, B. Ultra-processed foods and food additives in gut health and disease. Nat. Rev. Gastroenterol. Hepatol. https://doi.org/10.1038/s41575-024-00893-5 (2024).

Chewning, J. H. & Weaver, C. T. Development and survival of Th17 cells within the intestines: the influence of microbiome- and diet-derived signals. J. Immunol. 193, 4769–4777 (2014).

Article  CAS  PubMed  Google Scholar 

Dapa, T., Ramiro, R. S., Pedro, M. F., Gordo, I. & Xavier, K. B. Diet leaves a genetic signature in a keystone member of the gut microbiota. Cell Host Microbe 30, 183–199.e110 (2022).

Article  CAS  PubMed  Google Scholar 

Zeng, X. et al. Gut bacterial nutrient preferences quantified in vivo. Cell 185, 3441–3456.e3419 (2022).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Viennois, E. et al. Dietary emulsifiers directly impact adherent-invasive E. coli gene expression to drive chronic intestinal inflammation. Cell Rep. 33, 108229 (2020).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Wilck, N. et al. Salt-responsive gut commensal modulates TH17 axis and disease. Nature 551, 585–589 (2017).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Hall, K. D. et al. Ultra-processed diets cause excess calorie intake and weight gain: an inpatient randomized controlled trial of ad libitum food intake. Cell Metab. 30, 67–77.e63 (2019).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Link, V. M. et al. Differential peripheral immune signatures elicited by vegan versus ketogenic diets in humans. Nat. Med. 30, 560–572 (2024).

Article  CAS  PubMed  PubMed Central  Google Scholar 

Horn, V. & Sonnenberg, G. F. Group 3 innate lymphoid cells in intestinal health and disease. Nat. Rev. Gastroenterol. Hepatol. https://doi.org/10.1038/s41575-024-00906-3 (2024).