O’Neill, J. Tackling drug-resistant infections globally: final report and recommendations. AMR Review https://amr-review.org/sites/default/files/160518_Final%20paper_with%20cover.pdf (2016).
Murray, C. J. et al. Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis. Lancet 399, 629–655 (2022).
Choudhury, R., Panda, S. & Singh, D. Emergence and dissemination of antibiotic resistance: a global problem. Indian J. Med. Microbiol. 30, 384–390 (2012).
Article CAS PubMed Google Scholar
Bougnom, B. P. & Piddock, L. J. V. Wastewater for urban agriculture: a significant factor in dissemination of antibiotic resistance. Environ. Sci. Technol. 51, 5863–5864 (2017).
Article CAS PubMed Google Scholar
Goulas, A. et al. How effective are strategies to control the dissemination of antibiotic resistance in the environment? A systematic review. Environ. Evid. 9, 4 (2020).
Zhu, G. et al. Air pollution could drive global dissemination of antibiotic resistance genes. ISME J. 15, 270–281 (2021).
Article CAS PubMed Google Scholar
Ellabaan, M. M. H., Munck, C., Porse, A., Imamovic, L. & Sommer, M. O. A. Forecasting the dissemination of antibiotic resistance genes across bacterial genomes. Nat. Commun. 12, 2435 (2021).
Article CAS PubMed PubMed Central Google Scholar
Grote, A. & Earl, A. M. Within-host evolution of bacterial pathogens during persistent infection of humans. Curr. Opin. Microbiol. 70, 102197 (2022).
Article CAS PubMed Google Scholar
Didelot, X., Walker, A. S., Peto, T. E., Crook, D. W. & Wilson, D. J. Within-host evolution of bacterial pathogens. Nat. Rev. Microbiol. 14, 150–162 (2016).
Article CAS PubMed PubMed Central Google Scholar
Castro, R. A. D., Borrell, S. & Gagneux, S. The within-host evolution of antimicrobial resistance in Mycobacterium tuberculosis. FEMS Microbiol. Rev. 45, fuaa071 (2021).
Article CAS PubMed Google Scholar
Winstanley, C., O’Brien, S. & Brockhurst, M. A. Pseudomonas aeruginosa evolutionary adaptation and diversification in cystic fibrosis chronic lung infections. Trends Microbiol. 24, 327–337 (2016).
Article CAS PubMed PubMed Central Google Scholar
Marvig, R. L., Sommer, L. M., Molin, S. & Johansen, H. K. Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis. Nat. Genet. 47, 57–64 (2015).
Article CAS PubMed Google Scholar
Giulieri, S. G. et al. Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections. eLife 11, e77195 (2022).
Article CAS PubMed PubMed Central Google Scholar
Azarian, T., Ridgway, J. P., Yin, Z. & David, M. Z. Long-term intrahost evolution of methicillin resistant Staphylococcus aureus among cystic fibrosis patients with respiratory carriage. Front. Genet. 10, 546 (2019).
Article CAS PubMed PubMed Central Google Scholar
Li, S., Feng, X., Li, M. & Shen, Z. In vivo adaptive antimicrobial resistance in Klebsiella pneumoniae during antibiotic therapy. Front. Microbiol. 14, 1159912 (2023).
Article PubMed PubMed Central Google Scholar
Friedman, N. D., Temkin, E. & Carmeli, Y. The negative impact of antibiotic resistance. Clin. Microbiol. Infect. 22, 416–422 (2016).
Article CAS PubMed Google Scholar
Goossens, H., Ferech, M., Stichele, R. V. & Elseviers, M. Outpatient antibiotic use in Europe and association with resistance: a cross-national database study. Lancet 365, 579–587 (2005).
Gustafsson, I. Bacteria with increased mutation frequency and antibiotic resistance are enriched in the commensal flora of patients with high antibiotic usage. J. Antimicrob. Chemother. 52, 645–650 (2003).
Article CAS PubMed Google Scholar
Baquero, F. et al. Evolutionary pathways and trajectories in antibiotic resistance. Clin. Microbiol. Rev. 34, e00050-19 (2021).
Article CAS PubMed PubMed Central Google Scholar
Vanacker, M., Lenuzza, N. & Rasigade, J.-P. The fitness cost of horizontally transferred and mutational antimicrobial resistance in Escherichia coli. Front. Microbiol. 14, 1186920 (2023).
Article PubMed PubMed Central Google Scholar
Melnyk, A. H., Wong, A. & Kassen, R. The fitness costs of antibiotic resistance mutations. Evol. Appl. 8, 273–283 (2015).
Hendriksen, R. S. et al. Using genomics to track global antimicrobial resistance. Front. Public. Health 7, 242 (2019).
Article PubMed PubMed Central Google Scholar
Darby, E. M. et al. Molecular mechanisms of antibiotic resistance revisited. Nat. Rev. Microbiol. 21, 280–295 (2023).
Article CAS PubMed Google Scholar
McEwen, S. A. & Collignon, P. J. Antimicrobial resistance: a one health perspective. Microbiol. Spectr. 6, 6.2.10 (2018).
Hiltunen, T., Virta, M. & Laine, A.-L. Antibiotic resistance in the wild: an eco-evolutionary perspective. Philos. Trans. R. Soc. B Biol. Sci. 372, 20160039 (2017).
Larsson, D. G. J. & Flach, C.-F. Antibiotic resistance in the environment. Nat. Rev. Microbiol. 20, 257–269 (2022).
Article CAS PubMed Google Scholar
Chung, H. et al. Rapid expansion and extinction of antibiotic resistance mutations during treatment of acute bacterial respiratory infections. Nat. Commun. 13, 1231 (2022). Captures dynamic fluctuations in resistance mutations across 420 P. aeruginosa isolates during acute infection, capturing both spontaneous mutation and dynamic selection of pre-existing resistance at the start of antibiotic selection.
Article CAS PubMed PubMed Central Google Scholar
Eklöf, J. et al. Persistence and genetic adaptation of Pseudomonas aeruginosa in patients with chronic obstructive pulmonary disease. Clin. Microbiol. Infect. 28, 990–995 (2022). Study of P. aeruginosa adaptation in patients with chronic obstructive pulmonary disease, covering 153 isolates from 23 patients across 1 year of infection and identifying multiple spontaneous mutations that conferred resistance to anti-pseudomonal drugs.
Hjort, K. et al. Dynamics of extensive drug resistance evolution of Mycobacterium tuberculosis in a single patient during 9 years of disease and treatment. J. Infect. Dis. 225, 1011–1020 (2022).
Article CAS PubMed Google Scholar
Khademi, S. M. H., Sazinas, P. & Jelsbak, L. Within-host adaptation mediated by intergenic evolution in Pseudomonas aeruginosa. Genome Biol. Evol. 11, 1385–1397 (2019).
Article CAS PubMed PubMed Central Google Scholar
Liao, W. et al. Evolution of tet(A) variant mediating tigecycline resistance in KPC-2-producing Klebsiella pneumoniae during tigecycline treatment. J. Glob. Antimicrob. Resist. 28, 168–173 (2022).
Article CAS PubMed Google Scholar
Lindemann, P. C. et al. Case report: whole-genome sequencing of serially collected Haemophilus influenzae from a patient with common variable immunodeficiency reveals within-host evolution of resistance to trimethoprim–sulfamethoxazole and azithromycin after prolonged treatment with these antibiotics. Front. Cell. Infect. Microbiol. 12, 896823 (2022).
Article PubMed PubMed Central Google Scholar
Long, D. R. et al. Polyclonality, shared strains, and convergent evolution in chronic cystic fibrosis Staphylococcus aureus airway infection. Am. J. Respir. Crit. Care Med. 203, 1127–1137 (2021).
Article CAS PubMed PubMed Central Google Scholar
Sommer, L. M. et al. Bacterial evolution in PCD and CF patients follows the same mutational steps. Sci. Rep. 6, 28732 (2016).
Article CAS PubMed PubMed Central Google Scholar
Aihara, M. et al. Within-host evolution of a Klebsiella pneumoniae clone: selected mutations associated with the alteration of outer membrane protein expression conferred multidrug resistance. J. Antimicrob. Chemother. 76, 362–369 (2021).
Article CAS PubMed Google Scholar
Boulant, T. et al. A 2.5-year within-patient evolution of Pseudomonas aeruginosa isolates with in vivo acquisition of ceftolozane–tazobactam and ceftazidime–avibactam resistance upon treatment. Antimicrob. Agents Chemother. 63, e01637-19 (2019).
Article PubMed PubMed Central Google Scholar
Chen, C.-J., Huang, Y.-C. & Shie, S.-S. Evolution of multi-resistance to vancomycin, daptomycin, and linezolid in methicillin-resistant Staphylococcus aureus causing persistent bacteremia. Front. Microbiol. 11, 1414 (2020).
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