Bao JH, Lu WC, Duan H, Ye YQ, Li JB, Liao WT, Li YC, Sun YP (2022) Identification of a novel cuproptosis-related gene signature and integrative analyses in patients with lower-grade gliomas. Front Immunol 13:933973. https://doi.org/10.3389/fimmu.2022.933973

Article  CAS  PubMed  PubMed Central  Google Scholar 

Blanche P, Dartigues JF, Jacqmin-Gadda H (2013) Estimating and comparing time-dependent areas under receiver operating characteristic curves for censored event times with competing risks. Stat Med 32:5381–5397. https://doi.org/10.1002/sim.5958

Article  PubMed  Google Scholar 

Bruening W, Giasson BI, Klein-Szanto AJ, Lee VM, Trojanowski JQ, Godwin AK (2000) Synucleins are expressed in the majority of breast and ovarian carcinomas and in preneoplastic lesions of the ovary. Cancer 88:2154–2163

Article  CAS  PubMed  Google Scholar 

Chao B, Jiang F, Bai H, Meng P, Wang L, Wang F (2022) Predicting the prognosis of glioma by pyroptosis-related signature. J Cell Mol Med 26:133–143. https://doi.org/10.1111/jcmm.17061

Article  CAS  PubMed  Google Scholar 

Chen H, Huang Q, Zhai DZ, Dong J, Wang AD, Lan Q (2007) [CDK1 expression and effects of CDK1 silencing on the malignant phenotype of glioma cells]. Zhonghua Zhong Liu Za Zhi 29:484–488

CAS  PubMed  Google Scholar 

Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma’ayan A (2013) Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics 14:128. https://doi.org/10.1186/1471-2105-14-128

Article  PubMed  PubMed Central  Google Scholar 

Chen B, Zhou X, Yang L, Zhou H, Meng M, Zhang L, Li J (2022) A cuproptosis activation scoring model predicts neoplasm-immunity interactions and personalized treatments in glioma. Comput Biol Med 148:105924. https://doi.org/10.1016/j.compbiomed.2022.105924

Article  CAS  PubMed  Google Scholar 

de Bie P, Muller P, Wijmenga C, Klomp LW (2007) Molecular pathogenesis of Wilson and Menkes disease: correlation of mutations with molecular defects and disease phenotypes. J Med Genet 44:673–688. https://doi.org/10.1136/jmg.2007.052746

Article  CAS  PubMed  PubMed Central  Google Scholar 

Dhawan A, Barberis A, Cheng W-C, Domingo E, West C, Maughan T, Scott JG, Harris AL, Buffa FM (2019) Guidelines for using sigQC for systematic evaluation of gene signatures. Nat Protoc 14:1377–1400. https://doi.org/10.1038/s41596-019-0136-8

Article  CAS  PubMed  Google Scholar 

Friedman J, Hastie T, Tibshirani R (2010) Regularization paths for generalized Linear models via Coordinate Descent. J Stat Softw 33:1–22

Article  PubMed  PubMed Central  Google Scholar 

Ge EJ, Bush AI, Casini A, Cobine PA, Cross JR, DeNicola GM, Dou QP, Franz KJ, Gohil VM, Gupta S, Kaler SG, Lutsenko S, Mittal V, Petris MJ, Polishchuk R, Ralle M, Schilsky ML, Tonks NK, Vahdat LT, Van Aelst L, Xi D, Yuan P, Brady DC, Chang CJ (2022) Connecting copper and cancer: from transition metal signalling to metalloplasia. Nat Rev Cancer 22:102–113. https://doi.org/10.1038/s41568-021-00417-2

Article  CAS  PubMed  Google Scholar 

Goldman MJ, Craft B, Hastie M, Repečka K, McDade F, Kamath A, Banerjee A, Luo Y, Rogers D, Brooks AN, Zhu J, Haussler D (2020) Visualizing and interpreting cancer genomics data via the Xena platform. Nat Biotechnol 38:675–678. https://doi.org/10.1038/s41587-020-0546-8

Article  CAS  PubMed  PubMed Central  Google Scholar 

Guan X, Lu N, Zhang J (2022) The combined prognostic model of copper-dependent to predict the prognosis of pancreatic cancer. Front Genet 13:978988. https://doi.org/10.3389/fgene.2022.978988

Article  CAS  PubMed  PubMed Central  Google Scholar 

Guven M, Mete M, Trabulus DC, Ozoran E, Erhan D (2021) Association of TMPRSS6 polymorphisms with hematologic parameters, histopathological data and breast cancer risk in Turkish population. Meta Gene 29:100941. https://doi.org/10.1016/j.mgene.2021.100941

Article  CAS  Google Scholar 

Huang Q, Li F, Liu X, Li W, Shi W, Liu FF, O’Sullivan B, He Z, Peng Y, Tan AC, Zhou L, Shen J, Han G, Wang XJ, Thorburn J, Thorburn A, Jimeno A, Raben D, Bedford JS, Li CY (2011) Caspase 3-mediated stimulation of tumor cell repopulation during cancer radiotherapy. Nat Med 17:860–866. https://doi.org/10.1038/nm.2385

Article  CAS  PubMed  PubMed Central  Google Scholar 

Ioannidis NM, Rothstein JH, Pejaver V, Middha S, McDonnell SK, Baheti S, Musolf A, Li Q, Holzinger E, Karyadi D, Cannon-Albright LA, Teerlink CC, Stanford JL, Isaacs WB, Xu J, Cooney KA, Lange EM, Schleutker J, Carpten JD, Powell IJ, Cussenot O, Cancel-Tassin G, Giles GG, MacInnis RJ, Maier C, Hsieh CL, Wiklund F, Catalona WJ, Foulkes WD, Mandal D, Eeles RA, Kote-Jarai Z, Bustamante CD, Schaid DJ, Hastie T, Ostrander EA, Bailey-Wilson JE, Radivojac P, Thibodeau SN, Whittemore AS, Sieh W (2016) REVEL: an Ensemble Method for Predicting the pathogenicity of rare missense variants. Am J Hum Genet 99:877–885. https://doi.org/10.1016/j.ajhg.2016.08.016

Article  CAS  PubMed  PubMed Central  Google Scholar 

Jiang Y, Huo Z, Qi X, Zuo T, Wu Z (2022) Copper-induced tumor cell death mechanisms and antitumor theragnostic applications of copper complexes. Nanomed (Lond) 17:303–324. https://doi.org/10.2217/nnm-2021-0374

Article  CAS  Google Scholar 

Kaneva K, O’Halloran K, Triska P, Liu X, Merkurjev D, Bootwalla M, Ryutov A, Cotter JA, Ostrow D, Biegel JA, Gai X (2021) The spectrum of mitochondrial DNA (mtDNA) mutations in pediatric CNS tumors. Neurooncol Adv 3:vdab074. https://doi.org/10.1093/noajnl/vdab074

Article  PubMed  PubMed Central  Google Scholar 

Kawashima M, Suzuki SO, Doh-ura K, Iwaki T (2000) Alpha-synuclein is expressed in a variety of brain tumors showing neuronal differentiation. Acta Neuropathol 99:154–160. https://doi.org/10.1007/pl00007419

Article  CAS  PubMed  Google Scholar 

Kuleshov MV, Jones MR, Rouillard AD, Fernandez NF, Duan Q, Wang Z, Koplev S, Jenkins SL, Jagodnik KM, Lachmann A, McDermott MG, Monteiro CD, Gundersen GW, Ma’ayan A (2016) Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. Nucleic Acids Res 44:W90–W97. https://doi.org/10.1093/nar/gkw377

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li C-W, Lim S-O, Xia W, Lee H-H, Chan L-C, Kuo C-W, Khoo K-H, Chang S-S, Cha J-H, Kim T, Hsu JL, Wu Y, Hsu J-M, Yamaguchi H, Ding Q, Wang Y, Yao J, Lee C-C, Wu H-J, Sahin AA, Allison JP, Yu D, Hortobagyi GN, Hung M-C (2016) Glycosylation and stabilization of programmed death ligand-1 suppresses T-cell activity. Nat Commun 7:12632. https://doi.org/10.1038/ncomms12632

Article  CAS  PubMed  PubMed Central  Google Scholar 

Li L, Li L, Sun Q (2022) High expression of cuproptosis-related SLC31A1 gene in relation to unfavorable outcome and deregulated immune cell infiltration in breast cancer: an analysis based on public databases. BMC Bioinformatics 23:350. https://doi.org/10.1186/s12859-022-04894-6

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liberzon A, Birger C, Thorvaldsdóttir H, Ghandi M, Mesirov JP, Tamayo P (2015) The Molecular signatures database (MSigDB) hallmark gene set collection. Cell Syst 1:417–425. https://doi.org/10.1016/j.cels.2015.12.004

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu Y-Y, Slotine J-J, Barabási A-L (2011) Controllability of complex networks. Nature 473:167–173. https://doi.org/10.1038/nature10011

Article  CAS  PubMed  Google Scholar 

Liu X, Wang Y, Ji H, Aihara K, Chen L (2016) Personalized characterization of diseases using sample-specific networks. Nucleic Acids Res 44:e164. https://doi.org/10.1093/nar/gkw772

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liu C-J, Hu F-F, Xia M-X, Han L, Zhang Q, Guo A-Y (2018a) GSCALite: a web server for gene set cancer analysis. Bioinformatics 34:3771–3772. https://doi.org/10.1093/bioinformatics/bty411

Article  CAS  PubMed  Google Scholar 

Liu X, Li Y, Qian Z, Sun Z, Xu K, Wang K, Liu S, Fan X, Li S, Zhang Z, Jiang T, Wang Y (2018b) A radiomic signature as a non-invasive predictor of progression-free survival in patients with lower-grade gliomas. NeuroImage: Clin 20:1070–1077. https://doi.org/10.1016/j.nicl.2018.10.014

Article  PubMed  Google Scholar 

Liu X, Wu H, Liu Z (2022a) An Integrative Human Pan-cancer Analysis of Cyclin-Dependent Kinase 1 (CDK1). Cancers (Basel) 14. https://doi.org/10.3390/cancers14112658

Liu Y, Xiang J, Liao Y, Peng G, Shen C (2022b) Identification of tryptophan metabolic gene-related subtypes, development of prognostic models, and characterization of tumor microenvironment infiltration in gliomas. Front Mol Neurosci 15:1037835. https://doi.org/10.3389/fnmol.2022.1037835

Article  CAS  PubMed  PubMed Central  Google Scholar 

Lonsdale J, Thomas J, Salvatore M, Phillips R, Lo E, Shad S, Hasz R, Walters G, Garcia F, Young N, Foster B, Moser M, Karasik E, Gillard B, Ramsey K, Sullivan S, Bridge J, Magazine H, Syron J, Fleming J, Siminoff L, Traino H, Mosavel M, Barker L, Jewell S, Rohrer D, Maxim D, Filkins D, Harbach P, Cortadillo E, Berghuis B, Turner L, Hudson E, Feenstra K, Sobin L, Robb J, Branton P, Korzeniewski G, Shive C, Tabor D, Qi L, Groch K, Nampally S, Buia S, Zimmerman A, Smith A, Burges R, Robinson K, Valentino K, Bradbury D, Cosentino M, Diaz-Mayoral N, Kennedy M, Engel T, Williams P, Erickson K, Ardlie K, Winckler W, Getz G, DeLuca D, MacArthur D, Kellis M, Thomson A, Young T, Gelfand E, Donovan M, Meng Y, Grant G, Mash D, Marcus Y, Basile M, Liu J, Zhu J, Tu Z, Cox NJ, Nicolae DL, Gamazon ER, Im HK, Konkashbaev A, Pritchard J, Stevens M, Flutre T, Wen X, Dermitzakis ET, Lappalainen T, Guigo R, Monlong J, Sammeth M, Koller D, Battle A, Mostafavi S, McCarthy M, Rivas M, Maller J, Rusyn I, Nobel A, Wright F, Shabalin A, Feolo M, Sharopova N et al (2013) The genotype-tissue expression (GTEx) project. Nat Genet 45:580–585. https://doi.org/10.1038/ng.2653

Article  CAS