Mitochondrial 12S rRNA gene sequence analysis, a tool for species identification

Arif I.A., Khan H.A. 2009. Molecular markers for biodiversity analysis of wildlife animals: a brief review, Animal Biodiversity Conservation 32: 9-17.

Barbar M.E., Hussain T., Wajid A., Nawaz A., Nadeem A., Sha S.A., Shahid M.A.,     Ahmad N., Javed K., Abdullah M. 2015. Mitochondrial cytochrome b and d-loop sequence based genetic diversity in Mareecha and Bareela        camel breeds   of Pakistan. Journal of Animal and Plant Sciences 25: 591-594.

Birstein V.J. and de Salle R. 1998. Molecular phylogeny of Acipenserinae. Molecular Phylogenetic Evolution 9: 141–155 .

Dratch P., Shafer J., Hoesch R. and Espinoza E. 1996. Comparison of electrophoretic and chromatographic methods for analysis of deer haemoglobins. International Society for Animal Genetics. 27: 17–42.

Felsenstein, J .1985. Confidence limit on phylogenies: an approach using the boot strap. Evolution. 39: 783-791.

Friedheim, S. (2016). Comparison of Species Identification Methods, DNA Barcoding versus Morphological Taxonomy. Biology, 301(54): 74-86.

Galtier, N., Nabholz, B., Glémin, S., & Hurst, G. D. D. (2009). Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Molecular Ecology, 18(22), 4541–4550. doi:10.1111/j.1365-294x.2009.04380.x

Girish P.S., Anjaneyulu A.S.R., Viswas K.N., Anand M., Rajkumar N., Shivkumar B.M., Bhaskar S. 2004. Sequence analysis of mitochondrial 12S rRNA gene can identify meat species. Meat Science, 66: 551–556.

Gupta A, Bhardwaj A, Supriya, Sharma P, Pal Y,Mamta., and Kumar S. 2015. Mitochondrial DNA- a Tool for Phylogenetic and Biodiversity Search in Equines. Journal of Biodiversity & Endangered Species S1:006.

Gupta A.R., Patra R.C., Das D.K., Gupta P.K., Swarup D., Saini M.2008. Sequence characterization and polymerase chain reaction, restriction fragment length polymorphism of the mitochondrial DNA 12S rRNA gene         provides a method for species identification of Indian deer. Mitochondrial DNA. 19: 394–400.

Hall T.A .1999. BioEdit: a user-friendly biological sequence alignment editor and analysis programme for windows 95/98/NT. Nucleic Acids Symposium Series, 41: 95-98.

Hayashi J.I., Tagoshira Y., Yoshida M.C. 1985. Absence of extensive recombination between inter and intra species mtDNA in mammalian cells. Experimental Cell Research, 160: 387-395.

Irwin D.M., Kocher T.D., Wilson A.C. 1991. Evolution of the cytochrome b gene of mammals Journal of Molecular Evolution, 32: 123-144.

Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions       through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16: 111-120.

Kocher T.D., Thomas W.K., Meyer A., Edwards S.V., Paabo, S.,    Villablaned F.X., Wilson A.C. 1989. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the United States of America.  86, 6196-6200.

Kumar V. P., Kumar D., Goyal S.P. 2014. Wildlife DNA forensic in curbing illegal wildlife trade: specie identification from seizures. International Journal of Forensic Science & Pathology, 2: 38–42.

Martinez I., Yman I.M. 1998. Species identification in meat products by RAPD analysis. Food Research International, 31: 459-466.

Melton T., Holland C. 2007. Routine forensic use of the mitochondrial 12S ribosomal RNA gene for species identification. Journal of Forensic Sciences, 52: 1305-1307.

Nakamura, M., Ishibashi, Y., & Syuiti, A. (2002). Novel primer sets for species-specific amplification of the mitochondrial 12S rRNA genes in four Japanese woodpeckers (Picidae, Piciformes). Molecular Ecology Notes, 2(4), 419–421.

Panday R., Jha D.K., Thapa N., Pokharel B.R., Aryal N.K. 2014. Forensic Wildlife Parts and their Product Identification and Individualization using DNA Barcoding. The Open Forensic Science Journal, 7:6-13.

Panprommin D., Soontornprasit, K., Pangeson, T. 2019. Comparison of three molecular methods for species identification of the family Cichlidae in Kwan Phayao, Thailand. Mitochondrial DNA Part A, 30(1): 184-190

Pereira F., Carneiro J., Amorim A. 2008.  Identification of species with  DNA-  based technology: current progress and challenges.  Recent Patents on DNA & Gene Sequencو.‎ 2:187-199.

Saitou N., Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4: 406-425

Sambrook J., Russel D.W. 2001. Molecular cloning:  A laboratory manual. 3rd ed., Cold spring harbor laboratory press, New York, pp. 2000.

Tamura K., Slecher G., Peterson D., Filipski A., Kumar S. 2013. MEGA6: Molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution, 30: 2725-2729.

Veerkar E.L.C., Nijman L.J., Boutaga K., Lenstra J.A. 2002. Differentiation of cattle species in beef by PCR-RFLP of mitochondrial and satellite DNA. Meat Science, 60: 365-369.

Vos P., Hogers R., Bleeker M., Reijans M., Lee T., Hornes M. 1995. AFLP a new  technique for         DNA finger printing. Nucleic Acids Research. 23: 4407-4414.

Wolf C., Rentsch J., Hubner P. 1999. PCR-RFLP analysis of mitochondrial       DNA: a reliable method for species identification. Journal of Agricultural and Food Chemistry, 47: 1350-1355.

Yang L., Tan Z., Wang D., Xue L., Guan M., Huang T., Li R. 2014. Species identification through mitochondrial rRNA genetic analysis. Scientific Reports. 4: 4089.

Zhang Y.P., Ryder O.A. 1994. Phylogenetic relationships of bears (the Ursidae) inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 3: 351-359.

留言 (0)

沒有登入
gif