Different Adaption Strategies of Abundant and Rare Microbial Communities in Sediment and Water of East Dongting Lake

Abarenkov, K., Henrik Nilsson, R., Larsson, K. H., Alexander, I. J., Eberhardt, U., Erland, S., Hoiland, K., Kjoller, R., Larsson, E., Pennanen, T., et al. (2010). The UNITE database for molecular identification of fungi–recent updates and future perspectives. New Phytologist, 186, 281–285.

Article  PubMed  Google Scholar 

Banerjee, S., Schlaeppi, K., & Van Der Heijden, M. G. A. (2018). Keystone taxa as drivers of microbiome structure and functioning. Nature Reviews Microbiology, 16, 567–576.

Article  CAS  PubMed  Google Scholar 

Biddle, J. F., Fitz-Gibbon, S., Schuster, S. C., Brenchley, J. E., & House, C. H. (2008). Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. Proceedings of the National Academy of Sciences of the United States of America, 105, 10583–10588.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Chen, W., Ren, K., Isabwe, A., Chen, H., Liu, M., & Yang, J. (2019). Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons. Microbiome, 7, 138.

Article  PubMed  PubMed Central  Google Scholar 

Chen, J., Wang, P., Wang, C., Wang, X., Miao, L., Liu, S., Yuan, Q., & Sun, S. (2020). Fungal community demonstrates stronger dispersal limitation and less network connectivity than bacterial community in sediments along a large river. Environmental Microbiology, 22, 832–849.

Article  PubMed  Google Scholar 

Cole, J. J., Likens, G. E., & Strayer, D. L. (1982). Photosynthetically produced dissolved organic carbon: An important carbon source for planktonic bacteria 1. Limnology and Oceanography, 27, 1080–1090.

Article  CAS  Google Scholar 

D’elia, C. F., Steudler, P. A., & Corwin, N. (1977). Determination of total nitrogen in aqueous samples using persulfate digestion 1. Limnology and Oceanography, 22, 760–764.

Article  Google Scholar 

De Vries, F. T., Griffiths, R. I., Bailey, M., Craig, H., Girlanda, M., Gweon, H. S., Hallin, S., Kaisermann, A., Keith, A. M., & Kretzschmar, M. (2018). Soil bacterial networks are less stable under drought than fungal networks. Nature Communications, 9, 1–12.

Article  Google Scholar 

Du, C., Li, G., Xia, R., Li, C., Zhu, Q., Li, X., Li, J., Zhao, C., Tian, Z., & Zhang, L. (2022). New insights into cyanobacterial blooms and the response of associated microbial communities in freshwater ecosystems. Environmental Pollution, 309, 119781.

Article  CAS  PubMed  Google Scholar 

Edgar, R. C. (2013). UPARSE: Highly accurate OTU sequences from microbial amplicon reads. Nature Methods, 10, 996–998.

Article  CAS  PubMed  Google Scholar 

Farrer, E. C., Porazinska, D. L., Spasojevic, M. J., King, A. J., Bueno de Mesquita, C. P., Sartwell, S. A., Smith, J. G., White, C. T., Schmidt, S. K., & Suding, K. N. (2019). Soil microbial networks shift across a high-elevation successional gradient. Frontiers in Microbiol, 10, 2887.

Article  Google Scholar 

Gao, Y., Xie, Y. H., & Zou, D. S. (2020). Hydrological regime change and its ecological responses in East Dongting Lake, China. Ecohydrology & Hydrobiology, 20, 142–150.

Article  Google Scholar 

Gardes, M., & Bruns, T. D. (1993). ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Molecular Ecology, 2, 113–118.

Article  CAS  PubMed  Google Scholar 

Geng, M., Zhang, W., Hu, T., Wang, R., Cheng, X., & Wang, J. (2022). Eutrophication causes microbial community homogenization via modulating generalist species. Water Research, 210, 118003.

Article  CAS  PubMed  Google Scholar 

Gu, Y., Meng, D., Yang, S., Xiao, N., Li, Z., Liu, Z., Li, L., Zeng, X., Zeng, S., & Yin, H. (2019). Invader-resident community similarity contribute to the invasion process and regulate biofertilizer effectiveness. Journal of Cleaner Production, 241, 118278.

Article  Google Scholar 

Gu, Y. B., Liu, Z. H., Li, J. S., Meng, D. L., Yuan, H. J., Zhang, M., Zhang, H. T., Yin, H. Q., Cong, J., & Xiao, N. W. (2022). Body size as key trait determining aquatic metacommunity assemblies in benthonic and planktonic habitats of Dongting Lake, China. Ecological Indicators, 143, 109355.

Article  Google Scholar 

Herren, C. M., & Mcmahon, K. D. (2018). Keystone taxa predict compositional change in microbial communities. Environmental Microbiology, 20, 2207–2217.

Article  PubMed  Google Scholar 

Jahangir, M., Fenton, O., Carolan, R., Harrington, R., Johnston, P., Zaman, M., Richards, K., & Müller, C. (2020). Application of 15 N tracing for estimating nitrogen cycle processes in soils of a constructed wetland. Water Research, 183, 116062.

Article  CAS  PubMed  Google Scholar 

Jiao, S., & Lu, Y. (2020a). Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems. Environmental Microbiology, 22, 1052–1065.

Article  PubMed  Google Scholar 

Jiao, S., & Lu, Y. H. (2020b). Abundant fungi adapt to broader environmental gradients than rare fungi in agricultural fields. Global Change Biology, 26, 4506–4520.

Article  PubMed  Google Scholar 

Jiao, S., Chen, W., & Wei, G. (2017). Biogeography and ecological diversity patterns of rare and abundant bacteria in oil-contaminated soils. Molecular Ecology, 26, 5305–5317.

Article  CAS  PubMed  Google Scholar 

Jousset, A., Bienhold, C., Chatzinotas, A., Gallien, L., Gobet, A., Kurm, V., Kusel, K., Rillig, M. C., Rivett, D. W., et al. (2017). Where less may be more: How the rare biosphere pulls ecosystems strings. ISME Journal, 11, 853–862.

Article  PubMed  PubMed Central  Google Scholar 

Konopka, A., Lindemann, S., & Fredrickson, J. (2015). Dynamics in microbial communities: Unraveling mechanisms to identify principles. ISME Journal, 9, 1488–1495.

Article  PubMed  Google Scholar 

Legendre, P., & De Caceres, M. (2013). Beta diversity as the variance of community data: Dissimilarity coefficients and partitioning. Ecology Letters, 16, 951–963.

Article  PubMed  Google Scholar 

Lew, S., Glinska-Lewczuk, K., Burandt, P., Kulesza, K., Kobus, S., & Obolewski, K. (2022). Salinity as a determinant structuring microbial communities in coastal lakes. International Journal of Environmental Research and Public Health, 19, 4592.

Article  CAS  PubMed  PubMed Central  Google Scholar 

Liang, T., Lei, Z., Fuad, M. T. I., Wang, Q., Sun, S., Fang, J. K., & Liu, X. (2022). Distribution and potential sources of microplastics in sediments in remote lakes of Tibet, China. Science of the Total Environment, 806, 150526.

Article  CAS  PubMed  Google Scholar 

Liao, J. Q., Cao, X. F., Wang, J., Zhao, L., Sun, J. H., Jiang, D. L., & Huang, Y. (2017). Similar community assembly mechanisms underlie similar biogeography of rare and abundant bacteria in lakes on Yungui Plateau, China. Limnology and Oceanography, 62, 723–735.

Article  Google Scholar 

Liu, M., Liu, L., Chen, H., Yu, Z., Yang, J. R., Xue, Y., Huang, B., & Yang, J. (2019). Community dynamics of free-living and particle-attached bacteria following a reservoir Microcystis bloom. Science of the Total Environment, 660, 501–511.

Article  CAS  PubMed  Google Scholar 

Love, M. I., Huber, W., & Anders, S. (2014). Moderated estimation of Fold change and dispersion for RNA-seq data with DESeq2. Genome Biology, 15, 550.

Article  PubMed  PubMed Central  Google Scholar 

Lu, Q., Song, Y., Mao, G., Lin, B., Wang, Y., & Gao, G. (2020). Spatial variation in bacterial biomass, community composition and driving factors across a eutrophic river. Ecotoxicology and Environmental Safety, 205, 111113.

Article  CAS  PubMed  Google Scholar 

Lynch, M. D., & Neufeld, J. D. (2015). Ecology and exploration of the rare biosphere. Nature Reviews Microbiology, 13, 217–229.

Article  CAS  PubMed  Google Scholar 

Mo, Y., Zhang, W., Yang, J., Lin, Y., Yu, Z., & Lin, S. (2018). Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes. ISME Journal, 12, 2198–2210.

Article  PubMed  PubMed Central  Google Scholar 

Nelson, D. W., & Sommers, L. E. (1996). Total carbon, organic carbon, and organic matter. Methods of Soil Analysis: Part 3 Chemical Methods, 5, 961–1010.

Google Scholar 

Newton, R. J., Jones, S. E., Eiler, A., Mcmahon, K. D., & Bertilsson, S. (2011). A guide to the natural history of freshwater lake bacteria. Microbiology and Molecular Biology Reviews, 75, 14–49.

留言 (0)

沒有登入
gif